data_V4I # _chem_comp.id V4I _chem_comp.name "3-[2-oxidanylidene-2-[[5-[[(3R)-1-pyridazin-3-ylpyrrolidin-3-yl]amino]-1,3,4-thiadiazol-2-yl]amino]ethyl]benzoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H19 N7 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-05 _chem_comp.pdbx_modified_date 2023-10-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 425.464 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V4I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8JUB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V4I O1 O1 O 0 1 N N N -0.929 -8.817 44.785 -3.106 0.319 0.399 O1 V4I 1 V4I C1 C1 C 0 1 N N N -1.057 -9.051 45.985 -3.345 1.354 -0.188 C1 V4I 2 V4I N1 N1 N 0 1 N N N -1.776 -10.116 46.459 -2.335 2.095 -0.685 N1 V4I 3 V4I C2 C2 C 0 1 Y N N -2.701 -10.946 45.874 -1.017 1.674 -0.524 C2 V4I 4 V4I N2 N2 N 0 1 Y N N -3.392 -11.883 46.540 -0.644 0.592 0.082 N2 V4I 5 V4I N3 N3 N 0 1 Y N N -4.314 -12.603 45.763 0.715 0.371 0.124 N3 V4I 6 V4I C3 C3 C 0 1 Y N N -4.302 -12.244 44.476 1.448 1.275 -0.448 C3 V4I 7 V4I N4 N4 N 0 1 N N N -5.096 -12.859 43.623 2.835 1.257 -0.526 N4 V4I 8 V4I C4 C4 C 0 1 N N R -6.088 -13.777 44.141 3.587 0.150 0.071 C4 V4I 9 V4I C5 C5 C 0 1 N N N -6.539 -14.813 43.104 3.927 0.466 1.545 C5 V4I 10 V4I C6 C6 C 0 1 N N N -7.135 -13.928 42.032 5.366 -0.088 1.696 C6 V4I 11 V4I N5 N5 N 0 1 N N N -7.888 -12.966 42.838 5.993 0.235 0.388 N5 V4I 12 V4I C7 C7 C 0 1 Y N N -8.834 -12.106 42.353 7.109 -0.563 0.160 C7 V4I 13 V4I C8 C8 C 0 1 Y N N -9.582 -11.282 43.193 8.188 -0.528 1.042 C8 V4I 14 V4I C9 C9 C 0 1 Y N N -10.509 -10.461 42.634 9.275 -1.343 0.770 C9 V4I 15 V4I C10 C10 C 0 1 Y N N -10.661 -10.430 41.238 9.224 -2.142 -0.363 C10 V4I 16 V4I N6 N6 N 0 1 Y N N -9.925 -11.235 40.483 8.162 -2.112 -1.144 N6 V4I 17 V4I N7 N7 N 0 1 Y N N -9.003 -12.056 41.019 7.149 -1.365 -0.895 N7 V4I 18 V4I C11 C11 C 0 1 N N N -7.445 -13.044 44.233 4.949 -0.009 -0.631 C11 V4I 19 V4I S1 S1 S 0 1 Y N N -3.084 -10.922 44.075 0.405 2.525 -1.118 S1 V4I 20 V4I C12 C12 C 0 1 N N N -0.384 -8.164 47.026 -4.771 1.806 -0.368 C12 V4I 21 V4I C13 C13 C 0 1 Y N N -1.259 -7.068 47.597 -5.699 0.804 0.269 C13 V4I 22 V4I C14 C14 C 0 1 Y N N -1.610 -5.976 46.815 -6.179 -0.257 -0.472 C14 V4I 23 V4I C15 C15 C 0 1 Y N N -2.427 -4.966 47.313 -7.040 -1.184 0.120 C15 V4I 24 V4I C16 C16 C 0 1 N N N -2.806 -3.810 46.421 -7.557 -2.322 -0.666 C16 V4I 25 V4I O2 O2 O 0 1 N N N -2.276 -2.685 46.628 -8.387 -3.215 -0.093 O2 V4I 26 V4I O3 O3 O 0 1 N N N -3.632 -4.040 45.499 -7.234 -2.454 -1.830 O3 V4I 27 V4I C17 C17 C 0 1 Y N N -2.903 -5.046 48.618 -7.408 -1.030 1.458 C17 V4I 28 V4I C18 C18 C 0 1 Y N N -2.566 -6.123 49.414 -6.921 0.035 2.186 C18 V4I 29 V4I C19 C19 C 0 1 Y N N -1.749 -7.122 48.901 -6.064 0.947 1.595 C19 V4I 30 V4I H1 H1 H 0 1 N N N -1.592 -10.331 47.418 -2.526 2.922 -1.154 H1 V4I 31 V4I H2 H2 H 0 1 N N N -4.513 -13.377 42.997 3.305 1.976 -0.975 H2 V4I 32 V4I H3 H3 H 0 1 N N N -5.803 -14.241 45.097 3.016 -0.775 0.002 H3 V4I 33 V4I H4 H4 H 0 1 N N N -7.290 -15.499 43.522 3.907 1.541 1.724 H4 V4I 34 V4I H5 H5 H 0 1 N N N -5.687 -15.393 42.719 3.241 -0.048 2.218 H5 V4I 35 V4I H6 H6 H 0 1 N N N -7.797 -14.497 41.362 5.890 0.416 2.508 H6 V4I 36 V4I H7 H7 H 0 1 N N N -6.353 -13.431 41.439 5.348 -1.166 1.858 H7 V4I 37 V4I H8 H8 H 0 1 N N N -9.428 -11.296 44.262 8.176 0.114 1.911 H8 V4I 38 V4I H9 H9 H 0 1 N N N -11.127 -9.835 43.261 10.138 -1.355 1.420 H9 V4I 39 V4I H10 H10 H 0 1 N N N -11.372 -9.756 40.783 10.054 -2.789 -0.606 H10 V4I 40 V4I H11 H11 H 0 1 N N N -7.321 -12.039 44.663 5.046 -1.020 -1.027 H11 V4I 41 V4I H12 H12 H 0 1 N N N -8.161 -13.617 44.841 5.039 0.719 -1.437 H12 V4I 42 V4I H13 H13 H 0 1 N N N -0.054 -8.804 47.857 -4.906 2.778 0.106 H13 V4I 43 V4I H14 H14 H 0 1 N N N 0.492 -7.692 46.557 -4.996 1.885 -1.431 H14 V4I 44 V4I H15 H15 H 0 1 N N N -1.242 -5.909 45.802 -5.891 -0.369 -1.506 H15 V4I 45 V4I H16 H16 H 0 1 N N N -2.597 -2.061 45.988 -8.699 -3.943 -0.647 H16 V4I 46 V4I H17 H17 H 0 1 N N N -3.537 -4.264 49.009 -8.073 -1.744 1.921 H17 V4I 47 V4I H18 H18 H 0 1 N N N -2.935 -6.188 50.427 -7.206 0.155 3.221 H18 V4I 48 V4I H19 H19 H 0 1 N N N -1.487 -7.962 49.528 -5.682 1.777 2.172 H19 V4I 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V4I N6 N7 DOUB Y N 1 V4I N6 C10 SING Y N 2 V4I N7 C7 SING Y N 3 V4I C10 C9 DOUB Y N 4 V4I C6 N5 SING N N 5 V4I C6 C5 SING N N 6 V4I C7 N5 SING N N 7 V4I C7 C8 DOUB Y N 8 V4I C9 C8 SING Y N 9 V4I N5 C11 SING N N 10 V4I C5 C4 SING N N 11 V4I N4 C4 SING N N 12 V4I N4 C3 SING N N 13 V4I S1 C3 SING Y N 14 V4I S1 C2 SING Y N 15 V4I C4 C11 SING N N 16 V4I C3 N3 DOUB Y N 17 V4I O1 C1 DOUB N N 18 V4I O3 C16 DOUB N N 19 V4I N3 N2 SING Y N 20 V4I C2 N1 SING N N 21 V4I C2 N2 DOUB Y N 22 V4I C1 N1 SING N N 23 V4I C1 C12 SING N N 24 V4I C16 O2 SING N N 25 V4I C16 C15 SING N N 26 V4I C14 C15 DOUB Y N 27 V4I C14 C13 SING Y N 28 V4I C12 C13 SING N N 29 V4I C15 C17 SING Y N 30 V4I C13 C19 DOUB Y N 31 V4I C17 C18 DOUB Y N 32 V4I C19 C18 SING Y N 33 V4I N1 H1 SING N N 34 V4I N4 H2 SING N N 35 V4I C4 H3 SING N N 36 V4I C5 H4 SING N N 37 V4I C5 H5 SING N N 38 V4I C6 H6 SING N N 39 V4I C6 H7 SING N N 40 V4I C8 H8 SING N N 41 V4I C9 H9 SING N N 42 V4I C10 H10 SING N N 43 V4I C11 H11 SING N N 44 V4I C11 H12 SING N N 45 V4I C12 H13 SING N N 46 V4I C12 H14 SING N N 47 V4I C14 H15 SING N N 48 V4I O2 H16 SING N N 49 V4I C17 H17 SING N N 50 V4I C18 H18 SING N N 51 V4I C19 H19 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V4I InChI InChI 1.06 "InChI=1S/C19H19N7O3S/c27-16(10-12-3-1-4-13(9-12)17(28)29)22-19-25-24-18(30-19)21-14-6-8-26(11-14)15-5-2-7-20-23-15/h1-5,7,9,14H,6,8,10-11H2,(H,21,24)(H,28,29)(H,22,25,27)/t14-/m1/s1" V4I InChIKey InChI 1.06 HMCXTWYQJBJKRJ-CQSZACIVSA-N V4I SMILES_CANONICAL CACTVS 3.385 "OC(=O)c1cccc(CC(=O)Nc2sc(N[C@@H]3CCN(C3)c4cccnn4)nn2)c1" V4I SMILES CACTVS 3.385 "OC(=O)c1cccc(CC(=O)Nc2sc(N[CH]3CCN(C3)c4cccnn4)nn2)c1" V4I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)O)CC(=O)Nc2nnc(s2)N[C@@H]3CCN(C3)c4cccnn4" V4I SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C(=O)O)CC(=O)Nc2nnc(s2)NC3CCN(C3)c4cccnn4" # _pdbx_chem_comp_identifier.comp_id V4I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[2-oxidanylidene-2-[[5-[[(3~{R})-1-pyridazin-3-ylpyrrolidin-3-yl]amino]-1,3,4-thiadiazol-2-yl]amino]ethyl]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V4I "Create component" 2023-07-05 PDBJ V4I "Initial release" 2023-10-11 RCSB #