data_V4J # _chem_comp.id V4J _chem_comp.name "2-{[(4R)-4-hydroxyhexyl]oxy}ethyl 5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H32 N2 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-25 _chem_comp.pdbx_modified_date 2022-01-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 388.522 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V4J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XJQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V4J C16 C1 C 0 1 N N N 2.624 13.397 8.529 2.696 0.466 -1.006 C16 V4J 1 V4J C3 C2 C 0 1 N N N -2.176 15.861 8.483 -9.762 -1.997 0.154 C3 V4J 2 V4J C20 C3 C 0 1 N N R 6.028 16.403 7.476 7.301 -1.351 -0.534 C20 V4J 3 V4J C21 C4 C 0 1 N N N 6.595 14.916 5.791 7.151 -0.303 1.497 C21 V4J 4 V4J C22 C5 C 0 1 N N N -2.880 12.480 8.284 -6.446 -0.052 0.330 C22 V4J 5 V4J C23 C6 C 0 1 N N S 5.209 15.087 7.629 6.524 -0.038 -0.690 C23 V4J 6 V4J S1 S1 S 0 1 N N N 3.736 16.654 6.296 4.733 -1.986 -0.629 S1 V4J 7 V4J C15 C7 C 0 1 N N N -2.006 13.526 8.976 -7.892 -0.355 -0.069 C15 V4J 8 V4J C14 C8 C 0 1 N N N -3.664 15.806 8.161 -10.182 -3.331 0.775 C14 V4J 9 V4J O14 O1 O 0 1 N N N -0.665 10.698 9.749 -1.942 2.131 -0.463 O14 V4J 10 V4J C13 C9 C 0 1 N N N 0.379 10.561 8.904 -0.632 2.168 -0.175 C13 V4J 11 V4J C12 C10 C 0 1 N N N -1.324 9.445 9.944 -2.793 3.096 0.210 C12 V4J 12 V4J C11 C11 C 0 1 N N N 0.753 11.813 8.120 0.313 1.197 -0.835 C11 V4J 13 V4J C10 C12 C 0 1 N N N -2.794 9.705 10.292 -4.242 2.901 -0.242 C10 V4J 14 V4J C9 C13 C 0 1 N N N 2.259 11.972 8.141 1.737 1.452 -0.336 C9 V4J 15 V4J C7 C14 C 0 1 N N N -3.644 11.706 9.357 -6.057 1.337 -0.182 C7 V4J 16 V4J C1 C15 C 0 1 N N R -1.498 14.604 8.010 -8.281 -1.744 0.443 C1 V4J 17 V4J C17 C16 C 0 1 N N N 2.888 14.201 7.268 4.120 0.721 -0.507 C17 V4J 18 V4J C18 C17 C 0 1 N N S 3.725 15.441 7.586 5.079 -0.265 -1.177 C18 V4J 19 V4J C19 C18 C 0 1 N N N 5.050 17.537 7.086 6.451 -2.583 -0.902 C19 V4J 20 V4J N4 N1 N 0 1 N N N 6.889 16.111 6.304 7.639 -1.397 0.897 N4 V4J 21 V4J N5 N2 N 0 1 N N N 5.641 14.272 6.468 6.501 0.526 0.669 N5 V4J 22 V4J O15 O2 O 0 1 N N N 1.009 9.520 8.771 -0.209 2.981 0.613 O15 V4J 23 V4J O22 O3 O 0 1 N N N 7.152 14.456 4.792 7.285 -0.082 2.685 O22 V4J 24 V4J O5 O4 O 0 1 N N N -0.100 14.782 8.188 -7.491 -2.734 -0.218 O5 V4J 25 V4J O8 O5 O 0 1 N N N -3.457 10.300 9.164 -4.707 1.621 0.190 O8 V4J 26 V4J H1 H1 H 0 1 N N N 3.527 13.388 9.157 2.401 -0.553 -0.757 H1 V4J 27 V4J H2 H2 H 0 1 N N N 1.793 13.851 9.089 2.660 0.602 -2.087 H2 V4J 28 V4J H3 H3 H 0 1 N N N -2.042 15.959 9.570 -9.921 -2.032 -0.924 H3 V4J 29 V4J H4 H4 H 0 1 N N N -1.726 16.729 7.978 -10.359 -1.192 0.583 H4 V4J 30 V4J H5 H5 H 0 1 N N N 6.600 16.642 8.385 8.209 -1.326 -1.136 H5 V4J 31 V4J H6 H6 H 0 1 N N N -3.591 12.978 7.608 -6.356 -0.077 1.416 H6 V4J 32 V4J H7 H7 H 0 1 N N N -2.247 11.790 7.707 -5.784 -0.799 -0.107 H7 V4J 33 V4J H8 H8 H 0 1 N N N 5.461 14.592 8.578 7.050 0.633 -1.369 H8 V4J 34 V4J H9 H9 H 0 1 N N N -1.139 13.019 9.425 -8.554 0.392 0.368 H9 V4J 35 V4J H10 H10 H 0 1 N N N -2.597 14.012 9.766 -7.982 -0.330 -1.155 H10 V4J 36 V4J H11 H11 H 0 1 N N N -4.150 16.729 8.511 -9.585 -4.135 0.345 H11 V4J 37 V4J H12 H12 H 0 1 N N N -3.800 15.709 7.074 -10.023 -3.296 1.852 H12 V4J 38 V4J H13 H13 H 0 1 N N N -4.116 14.940 8.666 -11.237 -3.511 0.569 H13 V4J 39 V4J H14 H14 H 0 1 N N N -1.263 8.848 9.022 -2.726 2.950 1.288 H14 V4J 40 V4J H15 H15 H 0 1 N N N -0.841 8.898 10.767 -2.467 4.105 -0.041 H15 V4J 41 V4J H16 H16 H 0 1 N N N 0.282 12.693 8.583 0.018 0.178 -0.586 H16 V4J 42 V4J H17 H17 H 0 1 N N N 0.406 11.715 7.081 0.277 1.333 -1.916 H17 V4J 43 V4J H18 H18 H 0 1 N N N -2.852 10.388 11.153 -4.866 3.680 0.194 H18 V4J 44 V4J H19 H19 H 0 1 N N N -3.284 8.753 10.545 -4.294 2.958 -1.329 H19 V4J 45 V4J H20 H20 H 0 1 N N N 2.689 11.273 8.873 1.773 1.317 0.745 H20 V4J 46 V4J H21 H21 H 0 1 N N N 2.663 11.751 7.142 2.032 2.472 -0.584 H21 V4J 47 V4J H22 H22 H 0 1 N N N -3.269 11.992 10.351 -6.147 1.362 -1.268 H22 V4J 48 V4J H23 H23 H 0 1 N N N -4.715 11.945 9.287 -6.719 2.084 0.255 H23 V4J 49 V4J H24 H24 H 0 1 N N N -1.770 14.365 6.971 -8.106 -1.797 1.517 H24 V4J 50 V4J H25 H25 H 0 1 N N N 1.928 14.515 6.832 4.415 1.740 -0.756 H25 V4J 51 V4J H26 H26 H 0 1 N N N 3.431 13.573 6.546 4.156 0.586 0.574 H26 V4J 52 V4J H27 H27 H 0 1 N N N 3.396 15.924 8.518 5.017 -0.185 -2.262 H27 V4J 53 V4J H28 H28 H 0 1 N N N 5.523 18.249 6.394 6.602 -2.860 -1.945 H28 V4J 54 V4J H29 H29 H 0 1 N N N 4.689 18.074 7.975 6.678 -3.421 -0.242 H29 V4J 55 V4J H30 H30 H 0 1 N N N 7.593 16.726 5.948 8.135 -2.106 1.336 H30 V4J 56 V4J H31 H31 H 0 1 N N N 5.273 13.374 6.228 6.083 1.363 0.924 H31 V4J 57 V4J H32 H32 H 0 1 N N N 0.358 14.002 7.897 -7.596 -2.744 -1.179 H32 V4J 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V4J O22 C21 DOUB N N 1 V4J C21 N4 SING N N 2 V4J C21 N5 SING N N 3 V4J S1 C19 SING N N 4 V4J S1 C18 SING N N 5 V4J N4 C20 SING N N 6 V4J N5 C23 SING N N 7 V4J C19 C20 SING N N 8 V4J C17 C18 SING N N 9 V4J C17 C16 SING N N 10 V4J C20 C23 SING N N 11 V4J C18 C23 SING N N 12 V4J C1 O5 SING N N 13 V4J C1 C3 SING N N 14 V4J C1 C15 SING N N 15 V4J C11 C9 SING N N 16 V4J C11 C13 SING N N 17 V4J C9 C16 SING N N 18 V4J C14 C3 SING N N 19 V4J C22 C15 SING N N 20 V4J C22 C7 SING N N 21 V4J O15 C13 DOUB N N 22 V4J C13 O14 SING N N 23 V4J O8 C7 SING N N 24 V4J O8 C10 SING N N 25 V4J O14 C12 SING N N 26 V4J C12 C10 SING N N 27 V4J C16 H1 SING N N 28 V4J C16 H2 SING N N 29 V4J C3 H3 SING N N 30 V4J C3 H4 SING N N 31 V4J C20 H5 SING N N 32 V4J C22 H6 SING N N 33 V4J C22 H7 SING N N 34 V4J C23 H8 SING N N 35 V4J C15 H9 SING N N 36 V4J C15 H10 SING N N 37 V4J C14 H11 SING N N 38 V4J C14 H12 SING N N 39 V4J C14 H13 SING N N 40 V4J C12 H14 SING N N 41 V4J C12 H15 SING N N 42 V4J C11 H16 SING N N 43 V4J C11 H17 SING N N 44 V4J C10 H18 SING N N 45 V4J C10 H19 SING N N 46 V4J C9 H20 SING N N 47 V4J C9 H21 SING N N 48 V4J C7 H22 SING N N 49 V4J C7 H23 SING N N 50 V4J C1 H24 SING N N 51 V4J C17 H25 SING N N 52 V4J C17 H26 SING N N 53 V4J C18 H27 SING N N 54 V4J C19 H28 SING N N 55 V4J C19 H29 SING N N 56 V4J N4 H30 SING N N 57 V4J N5 H31 SING N N 58 V4J O5 H32 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V4J SMILES ACDLabs 12.01 "C(CCC(OCCOCCCC(CC)O)=O)CC1C2C(CS1)NC(N2)=O" V4J InChI InChI 1.03 "InChI=1S/C18H32N2O5S/c1-2-13(21)6-5-9-24-10-11-25-16(22)8-4-3-7-15-17-14(12-26-15)19-18(23)20-17/h13-15,17,21H,2-12H2,1H3,(H2,19,20,23)/t13-,14+,15+,17+/m1/s1" V4J InChIKey InChI 1.03 XPLYDBRQTYFSEO-AESZEHBQSA-N V4J SMILES_CANONICAL CACTVS 3.385 "CC[C@@H](O)CCCOCCOC(=O)CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12" V4J SMILES CACTVS 3.385 "CC[CH](O)CCCOCCOC(=O)CCCC[CH]1SC[CH]2NC(=O)N[CH]12" V4J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](CCCOCCOC(=O)CCCC[C@H]1[C@@H]2[C@H](CS1)NC(=O)N2)O" V4J SMILES "OpenEye OEToolkits" 2.0.7 "CCC(CCCOCCOC(=O)CCCCC1C2C(CS1)NC(=O)N2)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V4J "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(4R)-4-hydroxyhexyl]oxy}ethyl 5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoate" V4J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(4~{R})-4-oxidanylhexoxy]ethyl 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V4J "Create component" 2020-06-25 RCSB V4J "Initial release" 2022-01-19 RCSB ##