data_V4M # _chem_comp.id V4M _chem_comp.name "2-(4-chlorophenyl)-N-({2-[(3S)-2,6-dioxopiperidin-3-yl]-1-oxo-2,3-dihydro-1H-isoindol-5-yl}methyl)-2,2-difluoroacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H18 Cl F2 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-26 _chem_comp.pdbx_modified_date 2020-11-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 461.846 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V4M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XK9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V4M C1 C1 C 0 1 Y N N -15.429 130.010 26.717 -0.858 2.385 -0.181 C1 V4M 1 V4M C2 C2 C 0 1 Y N N -16.172 131.108 26.329 -0.232 1.291 -0.752 C2 V4M 2 V4M C3 C3 C 0 1 Y N N -17.469 131.279 26.737 -0.944 0.128 -0.994 C3 V4M 3 V4M C4 C4 C 0 1 Y N N -16.034 129.071 27.556 -2.196 2.326 0.152 C4 V4M 4 V4M C5 C5 C 0 1 Y N N -17.356 129.265 27.964 -2.922 1.159 -0.094 C5 V4M 5 V4M C6 C6 C 0 1 Y N N -18.048 130.348 27.559 -2.278 0.059 -0.666 C6 V4M 6 V4M N1 N1 N 0 1 N N N -19.474 129.058 28.949 -4.563 -0.465 -0.254 N1 V4M 7 V4M N2 N2 N 0 1 N N N -23.149 128.712 29.155 -8.176 -0.420 -0.608 N2 V4M 8 V4M N3 N3 N 0 1 N N N -16.560 132.656 24.536 2.037 0.924 0.028 N3 V4M 9 V4M O1 O1 O 0 1 N N N -17.842 127.402 29.337 -5.163 1.533 0.640 O1 V4M 10 V4M C7 C7 C 0 1 N N N -19.493 130.339 28.146 -3.318 -1.026 -0.791 C7 V4M 11 V4M C8 C8 C 0 1 N N N -18.179 128.418 28.829 -4.332 0.798 0.144 C8 V4M 12 V4M C9 C9 C 0 1 N N S -20.657 128.646 29.677 -5.848 -1.164 -0.172 C9 V4M 13 V4M C10 C10 C 0 1 N N N -21.023 129.680 30.755 -6.295 -1.244 1.292 C10 V4M 14 V4M C11 C11 C 0 1 N N N -22.242 129.132 31.532 -7.689 -1.872 1.346 C11 V4M 15 V4M C12 C12 C 0 1 N N N -23.399 129.027 30.531 -8.624 -1.084 0.468 C12 V4M 16 V4M C13 C13 C 0 1 N N N -21.813 128.474 28.707 -6.883 -0.410 -0.964 C13 V4M 17 V4M C14 C14 C 0 1 N N N -15.530 132.140 25.411 1.230 1.365 -1.112 C14 V4M 18 V4M C15 C15 C 0 1 N N N -16.447 132.521 23.098 3.381 0.907 -0.064 C15 V4M 19 V4M O2 O2 O 0 1 N N N -21.616 128.123 27.593 -6.540 0.218 -1.943 O2 V4M 20 V4M C16 C16 C 0 1 N N N -17.570 133.086 22.231 4.212 0.453 1.109 C16 V4M 21 V4M C17 C17 C 0 1 Y N N -17.133 133.273 20.777 5.541 -0.058 0.615 C17 V4M 22 V4M C18 C18 C 0 1 Y N N -15.982 133.984 20.466 5.690 -1.393 0.289 C18 V4M 23 V4M C19 C19 C 0 1 Y N N -15.603 134.147 19.144 6.908 -1.863 -0.163 C19 V4M 24 V4M C20 C20 C 0 1 Y N N -16.379 133.608 18.131 7.979 -0.996 -0.289 C20 V4M 25 V4M C21 C21 C 0 1 Y N N -17.532 132.903 18.437 7.830 0.340 0.037 C21 V4M 26 V4M C22 C22 C 0 1 Y N N -17.909 132.738 19.760 6.609 0.810 0.484 C22 V4M 27 V4M F1 F1 F 0 1 N N N -18.638 132.237 22.270 4.419 1.530 1.977 F1 V4M 28 V4M F2 F2 F 0 1 N N N -17.951 134.292 22.745 3.541 -0.570 1.787 F2 V4M 29 V4M O3 O3 O 0 1 N N N -24.510 129.218 30.894 -9.805 -1.049 0.738 O3 V4M 30 V4M O4 O4 O 0 1 N N N -15.511 131.973 22.620 3.923 1.256 -1.092 O4 V4M 31 V4M CL1 CL1 CL 0 0 N N N -15.891 133.823 16.428 9.513 -1.587 -0.850 CL1 V4M 32 V4M H1 H1 H 0 1 N N N -14.410 129.881 26.382 -0.296 3.287 0.009 H1 V4M 33 V4M H2 H2 H 0 1 N N N -18.031 132.142 26.413 -0.452 -0.724 -1.440 H2 V4M 34 V4M H3 H3 H 0 1 N N N -15.484 128.202 27.887 -2.680 3.180 0.601 H3 V4M 35 V4M H4 H4 H 0 1 N N N -23.910 128.659 28.508 -8.812 0.070 -1.152 H4 V4M 36 V4M H5 H5 H 0 1 N N N -17.359 133.111 24.928 1.604 0.645 0.850 H5 V4M 37 V4M H6 H6 H 0 1 N N N -19.673 131.214 28.787 -3.451 -1.298 -1.839 H6 V4M 38 V4M H7 H7 H 0 1 N N N -20.252 130.305 27.350 -3.020 -1.900 -0.212 H7 V4M 39 V4M H8 H8 H 0 1 N N N -20.467 127.682 30.172 -5.744 -2.171 -0.576 H8 V4M 40 V4M H9 H9 H 0 1 N N N -20.175 129.824 31.440 -5.594 -1.859 1.856 H9 V4M 41 V4M H10 H10 H 0 1 N N N -21.280 130.640 30.283 -6.332 -0.241 1.718 H10 V4M 42 V4M H11 H11 H 0 1 N N N -22.510 129.819 32.349 -7.640 -2.899 0.986 H11 V4M 43 V4M H12 H12 H 0 1 N N N -22.011 128.140 31.948 -8.053 -1.863 2.374 H12 V4M 44 V4M H13 H13 H 0 1 N N N -14.735 131.668 24.815 1.426 0.720 -1.968 H13 V4M 45 V4M H14 H14 H 0 1 N N N -15.103 132.958 26.009 1.490 2.393 -1.365 H14 V4M 46 V4M H15 H15 H 0 1 N N N -15.381 134.410 21.256 4.854 -2.070 0.389 H15 V4M 47 V4M H16 H16 H 0 1 N N N -14.703 134.694 18.903 7.025 -2.906 -0.417 H16 V4M 48 V4M H17 H17 H 0 1 N N N -18.136 132.483 17.646 8.666 1.017 -0.062 H17 V4M 49 V4M H18 H18 H 0 1 N N N -18.809 132.192 20.000 6.492 1.852 0.739 H18 V4M 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V4M CL1 C20 SING N N 1 V4M C20 C21 DOUB Y N 2 V4M C20 C19 SING Y N 3 V4M C21 C22 SING Y N 4 V4M C19 C18 DOUB Y N 5 V4M C22 C17 DOUB Y N 6 V4M C18 C17 SING Y N 7 V4M C17 C16 SING N N 8 V4M C16 F1 SING N N 9 V4M C16 F2 SING N N 10 V4M C16 C15 SING N N 11 V4M O4 C15 DOUB N N 12 V4M C15 N3 SING N N 13 V4M N3 C14 SING N N 14 V4M C14 C2 SING N N 15 V4M C2 C1 DOUB Y N 16 V4M C2 C3 SING Y N 17 V4M C1 C4 SING Y N 18 V4M C3 C6 DOUB Y N 19 V4M C4 C5 DOUB Y N 20 V4M C6 C5 SING Y N 21 V4M C6 C7 SING N N 22 V4M O2 C13 DOUB N N 23 V4M C5 C8 SING N N 24 V4M C7 N1 SING N N 25 V4M C13 N2 SING N N 26 V4M C13 C9 SING N N 27 V4M C8 N1 SING N N 28 V4M C8 O1 DOUB N N 29 V4M N1 C9 SING N N 30 V4M N2 C12 SING N N 31 V4M C9 C10 SING N N 32 V4M C12 O3 DOUB N N 33 V4M C12 C11 SING N N 34 V4M C10 C11 SING N N 35 V4M C1 H1 SING N N 36 V4M C3 H2 SING N N 37 V4M C4 H3 SING N N 38 V4M N2 H4 SING N N 39 V4M N3 H5 SING N N 40 V4M C7 H6 SING N N 41 V4M C7 H7 SING N N 42 V4M C9 H8 SING N N 43 V4M C10 H9 SING N N 44 V4M C10 H10 SING N N 45 V4M C11 H11 SING N N 46 V4M C11 H12 SING N N 47 V4M C14 H13 SING N N 48 V4M C14 H14 SING N N 49 V4M C18 H15 SING N N 50 V4M C19 H16 SING N N 51 V4M C21 H17 SING N N 52 V4M C22 H18 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V4M SMILES ACDLabs 12.01 "c2cc4C(N(C1CCC(NC1=O)=O)Cc4cc2CNC(C(F)(F)c3ccc(cc3)Cl)=O)=O" V4M InChI InChI 1.03 "InChI=1S/C22H18ClF2N3O4/c23-15-4-2-14(3-5-15)22(24,25)21(32)26-10-12-1-6-16-13(9-12)11-28(20(16)31)17-7-8-18(29)27-19(17)30/h1-6,9,17H,7-8,10-11H2,(H,26,32)(H,27,29,30)/t17-/m0/s1" V4M InChIKey InChI 1.03 PWBHUSLMHZLGRN-KRWDZBQOSA-N V4M SMILES_CANONICAL CACTVS 3.385 "FC(F)(C(=O)NCc1ccc2c(CN([C@H]3CCC(=O)NC3=O)C2=O)c1)c4ccc(Cl)cc4" V4M SMILES CACTVS 3.385 "FC(F)(C(=O)NCc1ccc2c(CN([CH]3CCC(=O)NC3=O)C2=O)c1)c4ccc(Cl)cc4" V4M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(C(=O)NCc2ccc3c(c2)CN(C3=O)[C@H]4CCC(=O)NC4=O)(F)F)Cl" V4M SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C(C(=O)NCc2ccc3c(c2)CN(C3=O)C4CCC(=O)NC4=O)(F)F)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V4M "SYSTEMATIC NAME" ACDLabs 12.01 "2-(4-chlorophenyl)-N-({2-[(3S)-2,6-dioxopiperidin-3-yl]-1-oxo-2,3-dihydro-1H-isoindol-5-yl}methyl)-2,2-difluoroacetamide" V4M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[[2-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-1-oxidanylidene-3~{H}-isoindol-5-yl]methyl]-2-(4-chlorophenyl)-2,2-bis(fluoranyl)ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V4M "Create component" 2020-06-26 RCSB V4M "Initial release" 2020-12-02 RCSB ##