data_V54 # _chem_comp.id V54 _chem_comp.name "7-{[3-({[(6-aminopyridin-2-yl)methyl]amino}methyl)phenoxy]methyl}quinolin-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H23 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-06-26 _chem_comp.pdbx_modified_date 2021-06-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 385.462 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V54 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XK8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V54 C02 C1 C 0 1 Y N N 4.461 6.534 22.233 -6.680 2.567 -0.044 C02 V54 1 V54 C03 C2 C 0 1 Y N N 4.296 5.368 21.444 -7.781 2.103 -0.756 C03 V54 2 V54 C04 C3 C 0 1 Y N N 5.407 4.865 20.780 -8.075 0.751 -0.734 C04 V54 3 V54 C05 C4 C 0 1 Y N N 6.665 5.506 20.891 -7.255 -0.094 0.002 C05 V54 4 V54 C06 C5 C 0 1 Y N N 6.733 6.657 21.677 -6.179 0.436 0.686 C06 V54 5 V54 C07 C6 C 0 1 N N N 7.984 7.399 21.884 -5.284 -0.476 1.486 C07 V54 6 V54 C09 C7 C 0 1 N N N 8.759 9.163 23.448 -3.233 -1.760 1.418 C09 V54 7 V54 C10 C8 C 0 1 Y N N 8.686 10.426 22.644 -2.061 -2.140 0.550 C10 V54 8 V54 C11 C9 C 0 1 Y N N 9.664 10.693 21.666 -2.134 -3.261 -0.256 C11 V54 9 V54 C12 C10 C 0 1 Y N N 9.604 11.876 20.924 -1.063 -3.610 -1.058 C12 V54 10 V54 C13 C11 C 0 1 Y N N 8.585 12.819 21.132 0.083 -2.839 -1.056 C13 V54 11 V54 C14 C12 C 0 1 Y N N 7.598 12.572 22.106 0.159 -1.713 -0.248 C14 V54 12 V54 C16 C13 C 0 1 N N N 6.517 14.669 21.538 2.353 -1.370 -1.097 C16 V54 13 V54 C17 C14 C 0 1 Y N N 5.431 15.663 21.988 3.509 -0.413 -0.961 C17 V54 14 V54 C18 C15 C 0 1 Y N N 4.945 16.703 21.145 3.578 0.701 -1.794 C18 V54 15 V54 C19 C16 C 0 1 Y N N 3.966 17.582 21.570 4.610 1.584 -1.695 C19 V54 16 V54 C20 C17 C 0 1 Y N N 3.395 17.482 22.868 5.617 1.371 -0.741 C20 V54 17 V54 C21 C18 C 0 1 Y N N 2.393 18.372 23.344 6.700 2.263 -0.608 C21 V54 18 V54 C22 C19 C 0 1 Y N N 1.901 18.220 24.611 7.643 1.998 0.338 C22 V54 19 V54 C23 C20 C 0 1 Y N N 2.410 17.146 25.422 7.519 0.860 1.148 C23 V54 20 V54 C26 C21 C 0 1 Y N N 3.842 16.458 23.718 5.548 0.239 0.108 C26 V54 21 V54 C27 C22 C 0 1 Y N N 4.867 15.568 23.250 4.465 -0.647 -0.021 C27 V54 22 V54 C28 C23 C 0 1 Y N N 7.672 11.375 22.852 -0.917 -1.365 0.555 C28 V54 23 V54 N01 N1 N 0 1 N N N 3.367 7.059 22.910 -6.377 3.924 -0.052 N01 V54 24 V54 N08 N2 N 0 1 N N N 7.748 8.204 23.101 -4.128 -0.869 0.669 N08 V54 25 V54 N24 N3 N 0 1 N N N 1.917 16.996 26.709 8.488 0.603 2.107 N24 V54 26 V54 N25 N4 N 0 1 Y N N 3.355 16.284 25.000 6.505 0.030 1.020 N25 V54 27 V54 N29 N5 N 0 1 Y N N 5.675 7.182 22.351 -5.922 1.729 0.647 N29 V54 28 V54 O15 O1 O 0 1 N N N 6.602 13.477 22.334 1.285 -0.952 -0.245 O15 V54 29 V54 H1 H1 H 0 1 N N N 3.334 4.885 21.362 -8.399 2.788 -1.318 H1 V54 30 V54 H2 H2 H 0 1 N N N 5.311 3.977 20.173 -8.924 0.362 -1.277 H2 V54 31 V54 H3 H3 H 0 1 N N N 7.538 5.119 20.387 -7.457 -1.154 0.040 H3 V54 32 V54 H4 H4 H 0 1 N N N 8.825 6.706 22.035 -4.938 0.046 2.378 H4 V54 33 V54 H5 H5 H 0 1 N N N 8.195 8.051 21.023 -5.841 -1.366 1.778 H5 V54 34 V54 H6 H6 H 0 1 N N N 9.745 8.703 23.286 -3.775 -2.659 1.710 H6 V54 35 V54 H7 H7 H 0 1 N N N 8.645 9.420 24.511 -2.872 -1.247 2.310 H7 V54 36 V54 H8 H8 H 0 1 N N N 10.460 9.984 21.490 -3.029 -3.866 -0.258 H8 V54 37 V54 H9 H9 H 0 1 N N N 10.358 12.069 20.175 -1.122 -4.486 -1.686 H9 V54 38 V54 H10 H10 H 0 1 N N N 8.558 13.728 20.549 0.920 -3.112 -1.682 H10 V54 39 V54 H11 H11 H 0 1 N N N 6.304 14.374 20.500 2.009 -1.380 -2.132 H11 V54 40 V54 H12 H12 H 0 1 N N N 7.490 15.181 21.581 2.675 -2.372 -0.812 H12 V54 41 V54 H13 H13 H 0 1 N N N 5.351 16.808 20.150 2.803 0.867 -2.528 H13 V54 42 V54 H14 H14 H 0 1 N N N 3.628 18.361 20.902 4.653 2.444 -2.347 H14 V54 43 V54 H15 H15 H 0 1 N N N 2.023 19.163 22.709 6.780 3.135 -1.241 H15 V54 44 V54 H16 H16 H 0 1 N N N 1.147 18.891 24.994 8.486 2.662 0.464 H16 V54 45 V54 H17 H17 H 0 1 N N N 5.214 14.789 23.912 4.395 -1.514 0.620 H17 V54 46 V54 H18 H18 H 0 1 N N N 6.924 11.183 23.607 -0.863 -0.487 1.181 H18 V54 47 V54 H19 H19 H 0 1 N N N 3.646 7.878 23.411 -5.613 4.253 0.446 H19 V54 48 V54 H20 H20 H 0 1 N N N 2.652 7.297 22.253 -6.930 4.541 -0.556 H20 V54 49 V54 H21 H21 H 0 1 N N N 6.890 8.701 22.973 -4.425 -1.297 -0.195 H21 V54 50 V54 H23 H23 H 0 1 N N N 2.369 16.221 27.151 9.240 1.207 2.211 H23 V54 51 V54 H24 H24 H 0 1 N N N 2.094 17.829 27.233 8.413 -0.181 2.674 H24 V54 52 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V54 C04 C05 DOUB Y N 1 V54 C04 C03 SING Y N 2 V54 C05 C06 SING Y N 3 V54 C12 C13 DOUB Y N 4 V54 C12 C11 SING Y N 5 V54 C13 C14 SING Y N 6 V54 C18 C19 DOUB Y N 7 V54 C18 C17 SING Y N 8 V54 C03 C02 DOUB Y N 9 V54 C16 C17 SING N N 10 V54 C16 O15 SING N N 11 V54 C19 C20 SING Y N 12 V54 C11 C10 DOUB Y N 13 V54 C06 C07 SING N N 14 V54 C06 N29 DOUB Y N 15 V54 C07 N08 SING N N 16 V54 C17 C27 DOUB Y N 17 V54 C14 O15 SING N N 18 V54 C14 C28 DOUB Y N 19 V54 C02 N29 SING Y N 20 V54 C02 N01 SING N N 21 V54 C10 C28 SING Y N 22 V54 C10 C09 SING N N 23 V54 C20 C21 DOUB Y N 24 V54 C20 C26 SING Y N 25 V54 N08 C09 SING N N 26 V54 C27 C26 SING Y N 27 V54 C21 C22 SING Y N 28 V54 C26 N25 DOUB Y N 29 V54 C22 C23 DOUB Y N 30 V54 N25 C23 SING Y N 31 V54 C23 N24 SING N N 32 V54 C03 H1 SING N N 33 V54 C04 H2 SING N N 34 V54 C05 H3 SING N N 35 V54 C07 H4 SING N N 36 V54 C07 H5 SING N N 37 V54 C09 H6 SING N N 38 V54 C09 H7 SING N N 39 V54 C11 H8 SING N N 40 V54 C12 H9 SING N N 41 V54 C13 H10 SING N N 42 V54 C16 H11 SING N N 43 V54 C16 H12 SING N N 44 V54 C18 H13 SING N N 45 V54 C19 H14 SING N N 46 V54 C21 H15 SING N N 47 V54 C22 H16 SING N N 48 V54 C27 H17 SING N N 49 V54 C28 H18 SING N N 50 V54 N01 H19 SING N N 51 V54 N01 H20 SING N N 52 V54 N08 H21 SING N N 53 V54 N24 H23 SING N N 54 V54 N24 H24 SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V54 SMILES ACDLabs 12.01 "c1(nc(ccc1)CNCc2cc(ccc2)OCc3cc4c(cc3)ccc(N)n4)N" V54 InChI InChI 1.03 "InChI=1S/C23H23N5O/c24-22-6-2-4-19(27-22)14-26-13-16-3-1-5-20(11-16)29-15-17-7-8-18-9-10-23(25)28-21(18)12-17/h1-12,26H,13-15H2,(H2,24,27)(H2,25,28)" V54 InChIKey InChI 1.03 NZFRFODKYHOBEA-UHFFFAOYSA-N V54 SMILES_CANONICAL CACTVS 3.385 "Nc1cccc(CNCc2cccc(OCc3ccc4ccc(N)nc4c3)c2)n1" V54 SMILES CACTVS 3.385 "Nc1cccc(CNCc2cccc(OCc3ccc4ccc(N)nc4c3)c2)n1" V54 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)OCc2ccc3ccc(nc3c2)N)CNCc4cccc(n4)N" V54 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)OCc2ccc3ccc(nc3c2)N)CNCc4cccc(n4)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V54 "SYSTEMATIC NAME" ACDLabs 12.01 "7-{[3-({[(6-aminopyridin-2-yl)methyl]amino}methyl)phenoxy]methyl}quinolin-2-amine" V54 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-[[3-[[(6-azanylpyridin-2-yl)methylamino]methyl]phenoxy]methyl]quinolin-2-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V54 "Create component" 2020-06-26 RCSB V54 "Initial release" 2021-06-30 RCSB ##