data_V58 # _chem_comp.id V58 _chem_comp.name "phenyl 2-[[4-[4-(dimethylamino)piperidin-1-yl]-2-methoxy-phenyl]amino]-4-(1H-indol-3-yl)pyrimidine-5-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H34 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-14 _chem_comp.pdbx_modified_date 2023-04-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 562.661 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V58 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OAB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V58 C10 C1 C 0 1 Y N N 41.746 -9.847 -2.851 -2.528 -0.471 0.089 C10 V58 1 V58 N12 N1 N 0 1 Y N N 40.398 -11.701 -3.278 -0.228 -0.063 -0.124 N12 V58 2 V58 C13 C2 C 0 1 Y N N 41.474 -12.417 -3.534 -0.418 1.186 0.286 C13 V58 3 V58 C15 C3 C 0 1 Y N N 42.265 -14.873 -3.759 1.965 1.530 0.178 C15 V58 4 V58 C17 C4 C 0 1 Y N N 44.467 -15.810 -4.047 3.494 -0.317 0.127 C17 V58 5 V58 C20 C5 C 0 1 N N N 46.380 -17.788 -3.542 5.853 -1.411 -0.227 C20 V58 6 V58 C21 C6 C 0 1 N N N 47.268 -18.991 -3.232 7.237 -1.946 -0.604 C21 V58 7 V58 C22 C7 C 0 1 N N N 46.839 -20.279 -3.777 8.298 -1.250 0.252 C22 V58 8 V58 C24 C8 C 0 1 N N N 47.035 -22.657 -3.369 10.679 -1.068 0.657 C24 V58 9 V58 C26 C9 C 0 1 N N N 45.401 -20.505 -3.870 8.201 0.263 0.041 C26 V58 10 V58 C28 C10 C 0 1 Y N N 42.725 -17.107 -3.019 4.271 1.898 -0.397 C28 V58 11 V58 C02 C11 C 0 1 N N N 41.834 -8.381 -2.431 -3.680 -1.377 -0.019 C02 V58 12 V58 C04 C12 C 0 1 Y N N 42.869 -6.683 -1.106 -4.585 -3.482 -0.301 C04 V58 13 V58 C05 C13 C 0 1 Y N N 42.161 -6.209 -0.013 -5.477 -3.461 -1.365 C05 V58 14 V58 C06 C14 C 0 1 Y N N 42.269 -4.875 0.350 -6.587 -4.283 -1.349 C06 V58 15 V58 C07 C15 C 0 1 Y N N 43.084 -4.019 -0.373 -6.810 -5.126 -0.276 C07 V58 16 V58 C08 C16 C 0 1 Y N N 43.795 -4.497 -1.463 -5.924 -5.147 0.785 C08 V58 17 V58 C09 C17 C 0 1 Y N N 43.690 -5.830 -1.827 -4.812 -4.328 0.774 C09 V58 18 V58 C11 C18 C 0 1 Y N N 40.490 -10.432 -2.940 -1.237 -0.907 -0.234 C11 V58 19 V58 C16 C19 C 0 1 Y N N 43.576 -14.753 -4.202 2.220 0.176 0.335 C16 V58 20 V58 C18 C20 C 0 1 Y N N 44.035 -16.987 -3.453 4.522 0.541 -0.239 C18 V58 21 V58 C25 C21 C 0 1 N N N 48.817 -21.197 -2.742 9.729 -3.179 -0.052 C25 V58 22 V58 C27 C22 C 0 1 N N N 44.537 -19.280 -4.160 6.790 0.734 0.399 C27 V58 23 V58 C29 C23 C 0 1 Y N N 41.838 -16.053 -3.177 2.995 2.394 -0.189 C29 V58 24 V58 C31 C24 C 0 1 N N N 40.084 -17.458 -2.432 3.850 4.548 -0.721 C31 V58 25 V58 C33 C25 C 0 1 Y N N 42.875 -10.630 -3.114 -2.692 0.868 0.517 C33 V58 26 V58 C34 C26 C 0 1 Y N N 44.325 -10.128 -3.079 -4.028 1.387 0.867 C34 V58 27 V58 C35 C27 C 0 1 Y N N 44.792 -8.864 -3.420 -4.666 1.253 2.061 C35 V58 28 V58 C37 C28 C 0 1 Y N N 46.543 -10.099 -2.869 -6.075 2.426 0.761 C37 V58 29 V58 C38 C29 C 0 1 Y N N 45.453 -10.918 -2.742 -4.930 2.158 -0.007 C38 V58 30 V58 C39 C30 C 0 1 Y N N 45.633 -12.263 -2.330 -4.847 2.615 -1.321 C39 V58 31 V58 C40 C31 C 0 1 Y N N 46.909 -12.747 -2.054 -5.893 3.330 -1.861 C40 V58 32 V58 C41 C32 C 0 1 Y N N 48.020 -11.912 -2.178 -7.025 3.596 -1.103 C41 V58 33 V58 C42 C33 C 0 1 Y N N 47.845 -10.595 -2.584 -7.120 3.150 0.197 C42 V58 34 V58 N14 N2 N 0 1 N N N 41.287 -13.806 -3.917 0.670 2.030 0.384 N14 V58 35 V58 N19 N3 N 0 1 N N N 44.926 -18.122 -3.260 5.811 0.040 -0.448 N19 V58 36 V58 N23 N4 N 0 1 N N N 47.374 -21.320 -2.897 9.633 -1.717 -0.146 N23 V58 37 V58 N32 N5 N 0 1 Y N N 42.679 -11.889 -3.457 -1.618 1.650 0.599 N32 V58 38 V58 N36 N6 N 0 1 Y N N 46.117 -8.864 -3.273 -5.879 1.864 2.005 N36 V58 39 V58 O01 O1 O 0 1 N N N 41.108 -7.566 -2.899 -4.806 -0.953 0.160 O01 V58 40 V58 O03 O2 O 0 1 N N N 42.777 -8.032 -1.459 -3.490 -2.678 -0.317 O03 V58 41 V58 O30 O3 O 0 1 N N N 40.511 -16.158 -2.740 2.747 3.722 -0.343 O30 V58 42 V58 H1 H1 H 0 1 N N N 45.488 -15.715 -4.387 3.690 -1.372 0.251 H1 V58 43 V58 H2 H2 H 0 1 N N N 46.492 -17.518 -4.602 5.096 -1.895 -0.845 H2 V58 44 V58 H3 H3 H 0 1 N N N 46.686 -16.939 -2.913 5.655 -1.625 0.823 H3 V58 45 V58 H4 H4 H 0 1 N N N 47.322 -19.093 -2.138 7.273 -3.021 -0.426 H4 V58 46 V58 H5 H5 H 0 1 N N N 48.271 -18.777 -3.631 7.429 -1.746 -1.658 H5 V58 47 V58 H6 H6 H 0 1 N N N 47.281 -20.403 -4.777 8.129 -1.484 1.303 H6 V58 48 V58 H7 H7 H 0 1 N N N 47.455 -23.406 -2.682 10.526 -1.303 1.710 H7 V58 49 V58 H8 H8 H 0 1 N N N 45.941 -22.766 -3.407 11.657 -1.431 0.341 H8 V58 50 V58 H9 H9 H 0 1 N N N 47.453 -22.808 -4.375 10.629 0.012 0.514 H9 V58 51 V58 H10 H10 H 0 1 N N N 45.067 -20.931 -2.912 8.926 0.767 0.680 H10 V58 52 V58 H11 H11 H 0 1 N N N 45.229 -21.234 -4.675 8.410 0.499 -1.003 H11 V58 53 V58 H12 H12 H 0 1 N N N 42.393 -18.025 -2.556 5.071 2.566 -0.682 H12 V58 54 V58 H13 H13 H 0 1 N N N 41.528 -6.876 0.554 -5.303 -2.803 -2.203 H13 V58 55 V58 H14 H14 H 0 1 N N N 41.716 -4.502 1.199 -7.281 -4.267 -2.176 H14 V58 56 V58 H15 H15 H 0 1 N N N 43.165 -2.981 -0.088 -7.679 -5.767 -0.266 H15 V58 57 V58 H16 H16 H 0 1 N N N 44.430 -3.831 -2.028 -6.101 -5.806 1.623 H16 V58 58 V58 H17 H17 H 0 1 N N N 44.248 -6.204 -2.673 -4.119 -4.345 1.603 H17 V58 59 V58 H18 H18 H 0 1 N N N 39.601 -9.854 -2.735 -1.069 -1.920 -0.568 H18 V58 60 V58 H19 H19 H 0 1 N N N 43.905 -13.836 -4.668 1.422 -0.494 0.619 H19 V58 61 V58 H20 H20 H 0 1 N N N 49.184 -21.992 -2.077 8.989 -3.635 -0.710 H20 V58 62 V58 H21 H21 H 0 1 N N N 49.301 -21.290 -3.726 10.727 -3.498 -0.352 H21 V58 63 V58 H22 H22 H 0 1 N N N 49.057 -20.216 -2.307 9.542 -3.491 0.975 H22 V58 64 V58 H23 H23 H 0 1 N N N 44.674 -18.982 -5.210 6.587 0.510 1.446 H23 V58 65 V58 H24 H24 H 0 1 N N N 43.481 -19.534 -3.985 6.713 1.809 0.236 H24 V58 66 V58 H25 H25 H 0 1 N N N 39.035 -17.431 -2.101 4.630 4.482 0.038 H25 V58 67 V58 H26 H26 H 0 1 N N N 40.170 -18.094 -3.326 4.246 4.211 -1.679 H26 V58 68 V58 H27 H27 H 0 1 N N N 40.712 -17.869 -1.628 3.516 5.582 -0.810 H27 V58 69 V58 H28 H28 H 0 1 N N N 44.188 -8.030 -3.746 -4.269 0.738 2.923 H28 V58 70 V58 H29 H29 H 0 1 N N N 44.777 -12.914 -2.230 -3.967 2.410 -1.912 H29 V58 71 V58 H30 H30 H 0 1 N N N 47.039 -13.773 -1.743 -5.832 3.686 -2.878 H30 V58 72 V58 H31 H31 H 0 1 N N N 49.009 -12.287 -1.960 -7.839 4.158 -1.537 H31 V58 73 V58 H32 H32 H 0 1 N N N 48.702 -9.945 -2.684 -8.006 3.362 0.777 H32 V58 74 V58 H33 H33 H 0 1 N N N 40.408 -14.051 -4.326 0.540 2.967 0.595 H33 V58 75 V58 H35 H35 H 0 1 N N N 46.712 -8.077 -3.434 -6.515 1.901 2.736 H35 V58 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V58 C16 C17 DOUB Y N 1 V58 C16 C15 SING Y N 2 V58 C27 C26 SING N N 3 V58 C27 N19 SING N N 4 V58 C17 C18 SING Y N 5 V58 N14 C15 SING N N 6 V58 N14 C13 SING N N 7 V58 C26 C22 SING N N 8 V58 C22 C21 SING N N 9 V58 C22 N23 SING N N 10 V58 C15 C29 DOUB Y N 11 V58 C20 N19 SING N N 12 V58 C20 C21 SING N N 13 V58 C13 N32 DOUB Y N 14 V58 C13 N12 SING Y N 15 V58 N32 C33 SING Y N 16 V58 C18 N19 SING N N 17 V58 C18 C28 DOUB Y N 18 V58 C35 N36 SING Y N 19 V58 C35 C34 DOUB Y N 20 V58 C24 N23 SING N N 21 V58 N12 C11 DOUB Y N 22 V58 N36 C37 SING Y N 23 V58 C29 C28 SING Y N 24 V58 C29 O30 SING N N 25 V58 C33 C34 SING N N 26 V58 C33 C10 DOUB Y N 27 V58 C34 C38 SING Y N 28 V58 C11 C10 SING Y N 29 V58 O01 C02 DOUB N N 30 V58 N23 C25 SING N N 31 V58 C37 C38 DOUB Y N 32 V58 C37 C42 SING Y N 33 V58 C10 C02 SING N N 34 V58 C38 C39 SING Y N 35 V58 O30 C31 SING N N 36 V58 C42 C41 DOUB Y N 37 V58 C02 O03 SING N N 38 V58 C39 C40 DOUB Y N 39 V58 C41 C40 SING Y N 40 V58 C09 C08 DOUB Y N 41 V58 C09 C04 SING Y N 42 V58 C08 C07 SING Y N 43 V58 O03 C04 SING N N 44 V58 C04 C05 DOUB Y N 45 V58 C07 C06 DOUB Y N 46 V58 C05 C06 SING Y N 47 V58 C17 H1 SING N N 48 V58 C20 H2 SING N N 49 V58 C20 H3 SING N N 50 V58 C21 H4 SING N N 51 V58 C21 H5 SING N N 52 V58 C22 H6 SING N N 53 V58 C24 H7 SING N N 54 V58 C24 H8 SING N N 55 V58 C24 H9 SING N N 56 V58 C26 H10 SING N N 57 V58 C26 H11 SING N N 58 V58 C28 H12 SING N N 59 V58 C05 H13 SING N N 60 V58 C06 H14 SING N N 61 V58 C07 H15 SING N N 62 V58 C08 H16 SING N N 63 V58 C09 H17 SING N N 64 V58 C11 H18 SING N N 65 V58 C16 H19 SING N N 66 V58 C25 H20 SING N N 67 V58 C25 H21 SING N N 68 V58 C25 H22 SING N N 69 V58 C27 H23 SING N N 70 V58 C27 H24 SING N N 71 V58 C31 H25 SING N N 72 V58 C31 H26 SING N N 73 V58 C31 H27 SING N N 74 V58 C35 H28 SING N N 75 V58 C39 H29 SING N N 76 V58 C40 H30 SING N N 77 V58 C41 H31 SING N N 78 V58 C42 H32 SING N N 79 V58 N14 H33 SING N N 80 V58 N36 H35 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V58 InChI InChI 1.03 "InChI=1S/C33H34N6O3/c1-38(2)22-15-17-39(18-16-22)23-13-14-29(30(19-23)41-3)36-33-35-21-27(32(40)42-24-9-5-4-6-10-24)31(37-33)26-20-34-28-12-8-7-11-25(26)28/h4-14,19-22,34H,15-18H2,1-3H3,(H,35,36,37)" V58 InChIKey InChI 1.03 PTQTXSUYGYJJKM-UHFFFAOYSA-N V58 SMILES_CANONICAL CACTVS 3.385 "COc1cc(ccc1Nc2ncc(C(=O)Oc3ccccc3)c(n2)c4c[nH]c5ccccc45)N6CCC(CC6)N(C)C" V58 SMILES CACTVS 3.385 "COc1cc(ccc1Nc2ncc(C(=O)Oc3ccccc3)c(n2)c4c[nH]c5ccccc45)N6CCC(CC6)N(C)C" V58 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C1CCN(CC1)c2ccc(c(c2)OC)Nc3ncc(c(n3)c4c[nH]c5c4cccc5)C(=O)Oc6ccccc6" V58 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C1CCN(CC1)c2ccc(c(c2)OC)Nc3ncc(c(n3)c4c[nH]c5c4cccc5)C(=O)Oc6ccccc6" # _pdbx_chem_comp_identifier.comp_id V58 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "phenyl 2-[[4-[4-(dimethylamino)piperidin-1-yl]-2-methoxy-phenyl]amino]-4-(1~{H}-indol-3-yl)pyrimidine-5-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V58 "Create component" 2021-04-14 PDBE V58 "Initial release" 2023-05-03 RCSB #