data_V5A # _chem_comp.id V5A _chem_comp.name "adenosine-5'-vanadate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H13 N5 O6 V" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-11-07 _chem_comp.pdbx_modified_date 2013-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V5A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4NDG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V5A OV2 OV2 O 0 1 N N N 2.559 -19.465 -16.051 5.856 -2.076 -1.008 OV2 V5A 1 V5A V V V 0 1 N N N 1.002 -19.475 -15.850 4.881 -0.888 0.002 V V5A 2 V5A OV1 OV1 O 0 1 N N N 0.286 -18.351 -15.029 5.369 -0.499 1.457 OV1 V5A 3 V5A "O5'" "O5'" O 0 1 N N N 0.153 -20.783 -16.446 3.338 -0.152 -0.678 "O5'" V5A 4 V5A "C5'" "C5'" C 0 1 N N N -1.257 -20.581 -16.474 2.683 0.752 0.214 "C5'" V5A 5 V5A "C4'" "C4'" C 0 1 N N R -1.933 -21.665 -17.283 1.419 1.300 -0.452 "C4'" V5A 6 V5A "C3'" "C3'" C 0 1 N N S -2.527 -21.228 -18.627 0.763 2.357 0.457 "C3'" V5A 7 V5A "O3'" "O3'" O 0 1 N N N -2.008 -22.061 -19.660 0.697 3.619 -0.209 "O3'" V5A 8 V5A "C2'" "C2'" C 0 1 N N R -4.034 -21.482 -18.476 -0.660 1.806 0.715 "C2'" V5A 9 V5A "O2'" "O2'" O 0 1 N N N -4.672 -21.917 -19.662 -1.630 2.854 0.667 "O2'" V5A 10 V5A "C1'" "C1'" C 0 1 N N R -4.083 -22.547 -17.386 -0.847 0.823 -0.469 "C1'" V5A 11 V5A "O4'" "O4'" O 0 1 N N N -3.018 -22.243 -16.521 0.464 0.242 -0.634 "O4'" V5A 12 V5A N9 N9 N 0 1 Y N N -5.303 -22.530 -16.578 -1.831 -0.209 -0.133 N9 V5A 13 V5A C4 C4 C 0 1 Y N N -5.875 -23.601 -15.931 -3.192 -0.106 -0.265 C4 V5A 14 V5A C5 C5 C 0 1 Y N N -6.999 -23.092 -15.259 -3.718 -1.332 0.178 C5 V5A 15 V5A N7 N7 N 0 1 Y N N -7.057 -21.763 -15.526 -2.669 -2.105 0.551 N7 V5A 16 V5A C8 C8 C 0 1 Y N N -6.055 -21.429 -16.293 -1.561 -1.449 0.364 C8 V5A 17 V5A N3 N3 N 0 1 Y N N -5.596 -24.900 -15.821 -4.025 0.837 -0.691 N3 V5A 18 V5A C2 C2 C 0 1 Y N N -6.367 -25.698 -15.104 -5.326 0.631 -0.698 C2 V5A 19 V5A N1 N1 N 0 1 Y N N -7.440 -25.262 -14.460 -5.866 -0.503 -0.292 N1 V5A 20 V5A C6 C6 C 0 1 Y N N -7.788 -23.982 -14.506 -5.112 -1.505 0.150 C6 V5A 21 V5A N6 N6 N 0 1 N N N -8.908 -23.530 -13.836 -5.687 -2.690 0.575 N6 V5A 22 V5A H1 H1 H 0 1 N N N 2.931 -18.709 -15.612 6.650 -2.409 -0.567 H1 V5A 23 V5A H2 H2 H 0 1 N N N -1.473 -19.603 -16.928 2.412 0.227 1.130 H2 V5A 24 V5A H3 H3 H 0 1 N N N -1.646 -20.602 -15.445 3.354 1.577 0.453 H3 V5A 25 V5A H4 H4 H 0 1 N N N -1.188 -22.448 -17.487 1.671 1.742 -1.416 H4 V5A 26 V5A H5 H5 H 0 1 N N N -2.330 -20.162 -18.811 1.313 2.448 1.394 H5 V5A 27 V5A H6 H6 H 0 1 N N N -1.076 -21.905 -19.755 0.242 4.307 0.295 H6 V5A 28 V5A H7 H7 H 0 1 N N N -4.510 -20.565 -18.099 -0.706 1.279 1.669 H7 V5A 29 V5A H8 H8 H 0 1 N N N -5.597 -22.053 -19.493 -1.499 3.542 1.334 H8 V5A 30 V5A H9 H9 H 0 1 N N N -3.947 -23.538 -17.843 -1.148 1.360 -1.369 H9 V5A 31 V5A H10 H10 H 0 1 N N N -5.852 -20.430 -16.649 -0.572 -1.831 0.574 H10 V5A 32 V5A H11 H11 H 0 1 N N N -6.113 -26.746 -15.040 -5.975 1.419 -1.050 H11 V5A 33 V5A H12 H12 H 0 1 N N N -9.346 -24.295 -13.364 -5.127 -3.413 0.896 H12 V5A 34 V5A H13 H13 H 0 1 N N N -8.639 -22.836 -13.168 -6.651 -2.797 0.551 H13 V5A 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V5A "O2'" "C2'" SING N N 1 V5A "O3'" "C3'" SING N N 2 V5A "C3'" "C2'" SING N N 3 V5A "C3'" "C4'" SING N N 4 V5A "C2'" "C1'" SING N N 5 V5A "C1'" N9 SING N N 6 V5A "C1'" "O4'" SING N N 7 V5A "C4'" "O4'" SING N N 8 V5A "C4'" "C5'" SING N N 9 V5A N9 C8 SING Y N 10 V5A N9 C4 SING Y N 11 V5A "C5'" "O5'" SING N N 12 V5A "O5'" V SING N N 13 V5A C8 N7 DOUB Y N 14 V5A OV2 V SING N N 15 V5A C4 N3 DOUB Y N 16 V5A C4 C5 SING Y N 17 V5A V OV1 DOUB N N 18 V5A N3 C2 SING Y N 19 V5A N7 C5 SING Y N 20 V5A C5 C6 DOUB Y N 21 V5A C2 N1 DOUB Y N 22 V5A C6 N1 SING Y N 23 V5A C6 N6 SING N N 24 V5A OV2 H1 SING N N 25 V5A "C5'" H2 SING N N 26 V5A "C5'" H3 SING N N 27 V5A "C4'" H4 SING N N 28 V5A "C3'" H5 SING N N 29 V5A "O3'" H6 SING N N 30 V5A "C2'" H7 SING N N 31 V5A "O2'" H8 SING N N 32 V5A "C1'" H9 SING N N 33 V5A C8 H10 SING N N 34 V5A C2 H11 SING N N 35 V5A N6 H12 SING N N 36 V5A N6 H13 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V5A SMILES ACDLabs 12.01 "O=[V](O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" V5A InChI InChI 1.03 "InChI=1S/C10H12N5O4.H2O.O.V/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10;;;/h2-4,6-7,10,17-18H,1H2,(H2,11,12,13);1H2;;/q-1;;;+2/p-1/t4-,6-,7-,10-;;;/m1.../s1" V5A InChIKey InChI 1.03 JVJRKVXEYLCGDR-MSQVLRTGSA-M V5A SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[V](O)=O)[C@@H](O)[C@H]3O" V5A SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[V](O)=O)[CH](O)[CH]3O" V5A SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[V](=O)O)O)O)N" V5A SMILES "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CO[V](=O)O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V5A "SYSTEMATIC NAME" ACDLabs 12.01 "(adenosinato-kappaO~5'~)(hydroxy)oxovanadium" V5A "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-oxidanylidene-vanadium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V5A "Create component" 2013-11-07 RCSB V5A "Initial release" 2013-12-18 RCSB #