data_V5T # _chem_comp.id V5T _chem_comp.name "4-(1~{H}-indol-3-yl)pyrimidin-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H10 N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-19 _chem_comp.pdbx_modified_date 2022-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 210.235 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V5T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7O9Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V5T C4 C1 C 0 1 Y N N 20.706 -19.392 3.366 1.161 0.585 -0.000 C4 V5T 1 V5T C5 C2 C 0 1 Y N N 21.973 -19.557 3.949 2.106 1.617 0.000 C5 V5T 2 V5T C6 C3 C 0 1 Y N N 22.889 -20.521 3.449 3.447 1.283 -0.001 C6 V5T 3 V5T N1 N1 N 0 1 Y N N 22.564 -21.349 2.359 3.796 0.005 -0.002 N1 V5T 4 V5T N3 N2 N 0 1 Y N N 20.429 -20.212 2.325 1.586 -0.679 0.004 N3 V5T 5 V5T CAD C4 C 0 1 Y N N 16.892 -16.606 4.290 -3.801 0.021 0.001 CAD V5T 6 V5T CAC C5 C 0 1 Y N N 15.926 -17.011 3.372 -3.843 -1.357 -0.001 CAC V5T 7 V5T CAB C6 C 0 1 Y N N 16.305 -18.023 2.474 -2.671 -2.099 -0.002 CAB V5T 8 V5T CAA C7 C 0 1 Y N N 17.578 -18.572 2.608 -1.454 -1.475 -0.002 CAA V5T 9 V5T CAF C8 C 0 1 Y N N 18.507 -18.156 3.503 -1.391 -0.083 0.000 CAF V5T 10 V5T CAE C9 C 0 1 Y N N 18.110 -17.170 4.334 -2.573 0.675 0.002 CAE V5T 11 V5T NAG N3 N 0 1 Y N N 19.169 -16.920 5.161 -2.211 2.005 -0.001 NAG V5T 12 V5T CAH C10 C 0 1 Y N N 20.196 -17.724 4.875 -0.854 2.123 0.001 CAH V5T 13 V5T CAI C11 C 0 1 Y N N 19.814 -18.476 3.834 -0.286 0.890 0.001 CAI V5T 14 V5T C2 C12 C 0 1 Y N N 21.302 -21.151 1.824 2.881 -0.953 -0.002 C2 V5T 15 V5T NAP N4 N 0 1 N N N 20.851 -21.939 0.795 3.289 -2.276 0.002 NAP V5T 16 V5T H1 H1 H 0 1 N N N 22.255 -18.942 4.790 1.794 2.651 0.001 H1 V5T 17 V5T H2 H2 H 0 1 N N N 23.857 -20.621 3.917 4.201 2.055 -0.001 H2 V5T 18 V5T H3 H3 H 0 1 N N N 16.655 -15.816 4.987 -4.719 0.590 -0.002 H3 V5T 19 V5T H4 H4 H 0 1 N N N 14.940 -16.571 3.352 -4.797 -1.863 -0.001 H4 V5T 20 V5T H5 H5 H 0 1 N N N 15.630 -18.365 1.703 -2.720 -3.178 -0.003 H5 V5T 21 V5T H6 H6 H 0 1 N N N 17.844 -19.388 1.952 -0.546 -2.059 -0.002 H6 V5T 22 V5T H7 H7 H 0 1 N N N 19.174 -16.228 5.883 -2.832 2.749 -0.004 H7 V5T 23 V5T H8 H8 H 0 1 N N N 21.148 -17.761 5.383 -0.312 3.057 -0.000 H8 V5T 24 V5T H9 H9 H 0 1 N N N 19.911 -21.686 0.568 2.630 -2.987 0.009 H9 V5T 25 V5T H10 H10 H 0 1 N N N 21.435 -21.807 -0.006 4.235 -2.491 -0.003 H10 V5T 26 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V5T NAP C2 SING N N 1 V5T C2 N3 DOUB Y N 2 V5T C2 N1 SING Y N 3 V5T N3 C4 SING Y N 4 V5T N1 C6 DOUB Y N 5 V5T CAB CAA DOUB Y N 6 V5T CAB CAC SING Y N 7 V5T CAA CAF SING Y N 8 V5T C4 CAI SING N N 9 V5T C4 C5 DOUB Y N 10 V5T CAC CAD DOUB Y N 11 V5T C6 C5 SING Y N 12 V5T CAF CAI SING Y N 13 V5T CAF CAE DOUB Y N 14 V5T CAI CAH DOUB Y N 15 V5T CAD CAE SING Y N 16 V5T CAE NAG SING Y N 17 V5T CAH NAG SING Y N 18 V5T C5 H1 SING N N 19 V5T C6 H2 SING N N 20 V5T CAD H3 SING N N 21 V5T CAC H4 SING N N 22 V5T CAB H5 SING N N 23 V5T CAA H6 SING N N 24 V5T NAG H7 SING N N 25 V5T CAH H8 SING N N 26 V5T NAP H9 SING N N 27 V5T NAP H10 SING N N 28 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V5T InChI InChI 1.03 "InChI=1S/C12H10N4/c13-12-14-6-5-11(16-12)9-7-15-10-4-2-1-3-8(9)10/h1-7,15H,(H2,13,14,16)" V5T InChIKey InChI 1.03 QNMZWFNNJMGJPU-UHFFFAOYSA-N V5T SMILES_CANONICAL CACTVS 3.385 "Nc1nccc(n1)c2c[nH]c3ccccc23" V5T SMILES CACTVS 3.385 "Nc1nccc(n1)c2c[nH]c3ccccc23" V5T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)c3ccnc(n3)N" V5T SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c[nH]2)c3ccnc(n3)N" # _pdbx_chem_comp_identifier.comp_id V5T _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-(1~{H}-indol-3-yl)pyrimidin-2-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V5T "Create component" 2021-04-19 PDBE V5T "Initial release" 2022-05-04 RCSB ##