data_V5V # _chem_comp.id V5V _chem_comp.name "(1R,3R,15E,28R,29R,30R,31R,34R,36R,39S,41R)-29,41-difluoro-34,39-disulfanyl-2,33,35,38,40,42-hexaoxa-4,6,9,11,13,18,20,22,25,27-decaaza-34,39-diphosphaoctacyclo[28.6.4.1~3,36~.1~28,31~.0~4,8~.0~7,12~.0~19,24~.0~23,27~]dotetraconta-5,7,9,11,15,19,21,23,25-nonaene 34,39-dioxide (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H26 F2 N10 O8 P2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-01 _chem_comp.pdbx_modified_date 2021-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 746.600 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V5V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XF3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V5V N1 N1 N 0 1 Y N N -14.772 82.011 145.523 -14.772 82.011 145.523 N1 V5V 1 V5V N3 N2 N 0 1 Y N N -16.432 84.832 147.334 -16.432 84.832 147.334 N3 V5V 2 V5V C4 C1 C 0 1 N N N -14.748 76.976 146.632 -14.748 76.976 146.632 C4 V5V 3 V5V C5 C2 C 0 1 Y N N -15.805 82.244 147.501 -15.805 82.244 147.501 C5 V5V 4 V5V C6 C3 C 0 1 Y N N -15.431 82.934 146.348 -15.431 82.934 146.348 C6 V5V 5 V5V C7 C4 C 0 1 Y N N -14.821 80.894 146.252 -14.821 80.894 146.252 C7 V5V 6 V5V C8 C5 C 0 1 Y N N -16.732 84.045 148.386 -16.732 84.045 148.386 C8 V5V 7 V5V C10 C6 C 0 1 N N R -16.298 77.368 141.717 -16.298 77.368 141.717 C10 V5V 8 V5V C13 C7 C 0 1 N N R -16.464 77.016 143.173 -16.464 77.016 143.173 C13 V5V 9 V5V C15 C8 C 0 1 Y N N -17.603 80.159 140.844 -17.603 80.159 140.844 C15 V5V 10 V5V C17 C9 C 0 1 Y N N -18.578 79.768 142.632 -18.578 79.768 142.632 C17 V5V 11 V5V C20 C10 C 0 1 N N N -18.455 84.103 142.406 -18.455 84.103 142.406 C20 V5V 12 V5V C21 C11 C 0 1 N N N -14.909 84.750 143.973 -14.909 84.750 143.973 C21 V5V 13 V5V C22 C12 C 0 1 N N N -16.026 84.454 143.015 -16.026 84.454 143.015 C22 V5V 14 V5V F1 F1 F 0 1 N N N -17.412 78.803 149.501 -17.412 78.803 149.501 F1 V5V 15 V5V C C13 C 0 1 N N R -17.049 79.352 148.307 -17.049 79.352 148.307 C V5V 16 V5V C3 C14 C 0 1 N N R -16.872 78.253 147.277 -16.872 78.253 147.277 C3 V5V 17 V5V O1 O1 O 0 1 N N N -17.924 77.308 147.303 -17.924 77.308 147.303 O1 V5V 18 V5V P P1 P 0 1 N N S -19.243 77.572 146.398 -19.243 77.572 146.398 P V5V 19 V5V O3 O2 O 0 1 N N N -20.320 76.567 146.671 -20.320 76.567 146.671 O3 V5V 20 V5V S1 S1 S 0 1 N N N -19.988 79.503 146.534 -19.988 79.503 146.534 S1 V5V 21 V5V O6 O3 O 0 1 N N N -18.630 77.381 144.920 -18.630 77.381 144.920 O6 V5V 22 V5V C14 C15 C 0 1 N N N -18.380 76.061 144.469 -18.380 76.061 144.469 C14 V5V 23 V5V C12 C16 C 0 1 N N R -17.723 76.179 143.104 -17.723 76.179 143.104 C12 V5V 24 V5V F F2 F 0 1 N N N -15.890 76.255 141.045 -15.890 76.255 141.045 F V5V 25 V5V O5 O4 O 0 1 N N N -15.392 76.309 143.763 -15.392 76.309 143.763 O5 V5V 26 V5V P1 P2 P 0 1 N N R -14.067 77.161 144.151 -14.067 77.161 144.151 P1 V5V 27 V5V O7 O5 O 0 1 N N N -13.771 78.208 143.124 -13.771 78.208 143.124 O7 V5V 28 V5V S S2 S 0 1 N N N -12.456 75.871 144.379 -12.456 75.871 144.379 S V5V 29 V5V O2 O6 O 0 1 N N N -14.543 77.845 145.538 -14.543 77.845 145.538 O2 V5V 30 V5V C2 C17 C 0 1 N N R -15.535 77.670 147.735 -15.535 77.670 147.735 C2 V5V 31 V5V O O7 O 0 1 N N N -14.743 78.784 148.202 -14.743 78.784 148.202 O V5V 32 V5V O4 O8 O 0 1 N N N -18.591 76.873 142.189 -18.591 76.873 142.189 O4 V5V 33 V5V C11 C18 C 0 1 N N R -17.749 77.706 141.340 -17.749 77.706 141.340 C11 V5V 34 V5V N5 N3 N 0 1 Y N N -17.980 79.114 141.595 -17.980 79.114 141.595 N5 V5V 35 V5V N6 N4 N 0 1 Y N N -18.624 81.107 142.595 -18.624 81.107 142.595 N6 V5V 36 V5V C16 C19 C 0 1 Y N N -17.965 81.389 141.389 -17.965 81.389 141.389 C16 V5V 37 V5V C19 C20 C 0 1 Y N N -17.621 82.540 140.661 -17.621 82.540 140.661 C19 V5V 38 V5V N8 N5 N 0 1 Y N N -16.956 82.359 139.489 -16.956 82.359 139.489 N8 V5V 39 V5V C18 C21 C 0 1 Y N N -16.669 81.107 139.085 -16.669 81.107 139.085 C18 V5V 40 V5V N7 N6 N 0 1 Y N N -16.956 79.946 139.696 -16.956 79.946 139.696 N7 V5V 41 V5V N9 N7 N 0 1 N N N -17.902 83.821 141.107 -17.902 83.821 141.107 N9 V5V 42 V5V C23 C22 C 0 1 N N N -17.330 84.395 143.358 -17.330 84.395 143.358 C23 V5V 43 V5V N4 N8 N 0 1 N N N -15.502 85.155 145.227 -15.502 85.155 145.227 N4 V5V 44 V5V C9 C23 C 0 1 Y N N -15.764 84.294 146.281 -15.764 84.294 146.281 C9 V5V 45 V5V N2 N9 N 0 1 Y N N -16.459 82.743 148.559 -16.459 82.743 148.559 N2 V5V 46 V5V N N10 N 0 1 Y N N -15.425 80.950 147.471 -15.425 80.950 147.471 N V5V 47 V5V C1 C24 C 0 1 N N R -15.637 79.903 148.452 -15.637 79.903 148.452 C1 V5V 48 V5V H1 H1 H 0 1 N N N -15.308 76.093 146.291 -15.308 76.093 146.291 H1 V5V 49 V5V H2 H2 H 0 1 N N N -13.772 76.660 147.029 -13.772 76.660 147.029 H2 V5V 50 V5V H3 H3 H 0 1 N N N -14.394 79.972 145.885 -14.394 79.972 145.885 H3 V5V 51 V5V H4 H4 H 0 1 N N N -17.261 84.525 149.196 -17.261 84.525 149.196 H4 V5V 52 V5V H5 H5 H 0 1 N N N -15.639 78.239 141.583 -15.639 78.239 141.583 H5 V5V 53 V5V H6 H6 H 0 1 N N N -16.676 77.933 143.742 -16.676 77.933 143.742 H6 V5V 54 V5V H7 H7 H 0 1 N N N -19.003 79.221 143.461 -19.003 79.221 143.461 H7 V5V 55 V5V H8 H8 H 0 1 N N N -19.122 84.976 142.343 -19.122 84.976 142.342 H8 V5V 56 V5V H9 H9 H 0 1 N N N -19.024 83.232 142.762 -19.024 83.232 142.762 H9 V5V 57 V5V H10 H10 H 0 1 N N N -14.295 83.850 144.122 -14.295 83.850 144.122 H10 V5V 58 V5V H11 H11 H 0 1 N N N -14.280 85.561 143.577 -14.280 85.561 143.577 H11 V5V 59 V5V H12 H12 H 0 1 N N N -15.769 84.276 141.981 -15.769 84.276 141.981 H12 V5V 60 V5V H13 H13 H 0 1 N N N -17.742 80.127 147.947 -17.742 80.127 147.947 H13 V5V 61 V5V H14 H14 H 0 1 N N N -16.758 78.696 146.276 -16.758 78.696 146.277 H14 V5V 62 V5V H15 H15 H 0 1 N N N -21.236 79.291 146.831 -21.236 79.291 146.831 H15 V5V 63 V5V H16 H16 H 0 1 N N N -19.325 75.504 144.387 -19.325 75.504 144.387 H16 V5V 64 V5V H17 H17 H 0 1 N N N -17.708 75.543 145.169 -17.708 75.543 145.169 H17 V5V 65 V5V H18 H18 H 0 1 N N N -17.480 75.176 142.724 -17.480 75.176 142.724 H18 V5V 66 V5V H19 H19 H 0 1 N N N -11.600 76.354 143.528 -11.600 76.354 143.528 H19 V5V 67 V5V H20 H20 H 0 1 N N N -15.714 76.959 148.555 -15.714 76.959 148.555 H20 V5V 68 V5V H21 H21 H 0 1 N N N -17.917 77.470 140.279 -17.917 77.470 140.279 H21 V5V 69 V5V H22 H22 H 0 1 N N N -16.139 81.026 138.148 -16.139 81.026 138.148 H22 V5V 70 V5V H23 H23 H 0 1 N N N -17.038 84.322 141.062 -17.038 84.322 141.062 H23 V5V 71 V5V H24 H24 H 0 1 N N N -17.583 84.571 144.393 -17.583 84.571 144.393 H24 V5V 72 V5V H25 H25 H 0 1 N N N -14.895 85.858 145.598 -14.895 85.858 145.598 H25 V5V 73 V5V H26 H26 H 0 1 N N N -15.495 80.292 149.471 -15.495 80.292 149.471 H26 V5V 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V5V C18 N8 DOUB Y N 1 V5V C18 N7 SING Y N 2 V5V N8 C19 SING Y N 3 V5V N7 C15 DOUB Y N 4 V5V C19 N9 SING N N 5 V5V C19 C16 DOUB Y N 6 V5V C15 C16 SING Y N 7 V5V C15 N5 SING Y N 8 V5V F C10 SING N N 9 V5V N9 C20 SING N N 10 V5V C11 N5 SING N N 11 V5V C11 C10 SING N N 12 V5V C11 O4 SING N N 13 V5V C16 N6 SING Y N 14 V5V N5 C17 SING Y N 15 V5V C10 C13 SING N N 16 V5V O4 C12 SING N N 17 V5V C20 C23 SING N N 18 V5V N6 C17 DOUB Y N 19 V5V C22 C23 DOUB N E 20 V5V C22 C21 SING N N 21 V5V C12 C13 SING N N 22 V5V C12 C14 SING N N 23 V5V O7 P1 DOUB N N 24 V5V C13 O5 SING N N 25 V5V O5 P1 SING N N 26 V5V C21 N4 SING N N 27 V5V P1 S SING N N 28 V5V P1 O2 SING N N 29 V5V C14 O6 SING N N 30 V5V O6 P SING N N 31 V5V N4 C9 SING N N 32 V5V N1 C7 DOUB Y N 33 V5V N1 C6 SING Y N 34 V5V O2 C4 SING N N 35 V5V C7 N SING Y N 36 V5V C9 C6 DOUB Y N 37 V5V C9 N3 SING Y N 38 V5V C6 C5 SING Y N 39 V5V P S1 SING N N 40 V5V P O3 DOUB N N 41 V5V P O1 SING N N 42 V5V C4 C2 SING N N 43 V5V C3 O1 SING N N 44 V5V C3 C2 SING N N 45 V5V C3 C SING N N 46 V5V N3 C8 DOUB Y N 47 V5V N C5 SING Y N 48 V5V N C1 SING N N 49 V5V C5 N2 DOUB Y N 50 V5V C2 O SING N N 51 V5V O C1 SING N N 52 V5V C C1 SING N N 53 V5V C F1 SING N N 54 V5V C8 N2 SING Y N 55 V5V C4 H1 SING N N 56 V5V C4 H2 SING N N 57 V5V C7 H3 SING N N 58 V5V C8 H4 SING N N 59 V5V C10 H5 SING N N 60 V5V C13 H6 SING N N 61 V5V C17 H7 SING N N 62 V5V C20 H8 SING N N 63 V5V C20 H9 SING N N 64 V5V C21 H10 SING N N 65 V5V C21 H11 SING N N 66 V5V C22 H12 SING N N 67 V5V C H13 SING N N 68 V5V C3 H14 SING N N 69 V5V S1 H15 SING N N 70 V5V C14 H16 SING N N 71 V5V C14 H17 SING N N 72 V5V C12 H18 SING N N 73 V5V S H19 SING N N 74 V5V C2 H20 SING N N 75 V5V C11 H21 SING N N 76 V5V C18 H22 SING N N 77 V5V N9 H23 SING N N 78 V5V C23 H24 SING N N 79 V5V N4 H25 SING N N 80 V5V C1 H26 SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V5V SMILES ACDLabs 12.01 "n1cn5c2ncnc(c12)NCC=CCNc8c3c(n(cn3)C7C(C6OP(S)(OCC4C(C(F)C5O4)OP(S)(=O)OCC6O7)=O)F)ncn8" V5V InChI InChI 1.03 "InChI=1S/C24H26F2N10O8P2S2/c25-13-17-11-5-39-46(38,48)44-18-12(6-40-45(37,47)43-17)42-24(14(18)26)36-10-34-16-20(30-8-32-22(16)36)28-4-2-1-3-27-19-15-21(31-7-29-19)35(9-33-15)23(13)41-11/h1-2,7-14,17-18,23-24H,3-6H2,(H,37,47)(H,38,48)(H,27,29,31)(H,28,30,32)/b2-1+/t11-,12-,13-,14-,17-,18-,23-,24-,45-,46+/m1/s1" V5V InChIKey InChI 1.03 YQSAUMRQALUWNS-VUCARUFASA-N V5V SMILES_CANONICAL CACTVS 3.385 "F[C@@H]1[C@@H]2O[P@](S)(=O)OC[C@H]3O[C@@H]4[C@H](F)[C@@H]3O[P@@](S)(=O)OC[C@H]2O[C@H]1n5cnc6c(NC\C=C\CNc7ncnc8n4cnc78)ncnc56" V5V SMILES CACTVS 3.385 "F[CH]1[CH]2O[P](S)(=O)OC[CH]3O[CH]4[CH](F)[CH]3O[P](S)(=O)OC[CH]2O[CH]1n5cnc6c(NCC=CCNc7ncnc8n4cnc78)ncnc56" V5V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c3c(n1)n(cn3)[C@H]4[C@@H]([C@H]5[C@H](O4)CO[P@](=O)(O[C@@H]6[C@@H](CO[P@@](=O)(O5)S)O[C@H]([C@@H]6F)n7cnc8c7ncnc8NC/C=C/CN2)S)F" V5V SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c3c(n1)n(cn3)C4C(C5C(O4)COP(=O)(OC6C(COP(=O)(O5)S)OC(C6F)n7cnc8c7ncnc8NCC=CCN2)S)F" # _pdbx_chem_comp_identifier.comp_id V5V _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(1R,3R,15E,28R,29R,30R,31R,34R,36R,39S,41R)-29,41-difluoro-34,39-disulfanyl-2,33,35,38,40,42-hexaoxa-4,6,9,11,13,18,20,22,25,27-decaaza-34,39-diphosphaoctacyclo[28.6.4.1~3,36~.1~28,31~.0~4,8~.0~7,12~.0~19,24~.0~23,27~]dotetraconta-5,7,9,11,15,19,21,23,25-nonaene 34,39-dioxide (non-preferred name)" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V5V "Create component" 2020-07-01 RCSB V5V "Initial release" 2021-02-17 RCSB ##