data_V5Z # _chem_comp.id V5Z _chem_comp.name DMHBO+ _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H25 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[4-[(4Z)-4-[(3,5-dimethoxy-4-oxidanyl-phenyl)methylidene]-2-[(Z)-hydroxyiminomethyl]-5-oxidanylidene-imidazol-1-yl]phenyl]-trimethyl-azanium" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2021-04-19 _chem_comp.pdbx_modified_date 2021-06-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 425.458 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V5Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OA3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V5Z C01 C1 C 0 1 N N N 24.270 8.429 -0.128 -3.428 -2.948 -1.369 C01 V5Z 1 V5Z C03 C2 C 0 1 Y N N 22.296 9.051 0.963 -4.519 -0.989 -0.576 C03 V5Z 2 V5Z C04 C3 C 0 1 Y N N 22.596 9.658 2.178 -3.287 -0.366 -0.596 C04 V5Z 3 V5Z C05 C4 C 0 1 Y N N 21.812 10.701 2.651 -3.177 0.977 -0.207 C05 V5Z 4 V5Z C06 C5 C 0 1 N N N 22.102 11.412 3.993 -1.874 1.642 -0.227 C06 V5Z 5 V5Z C07 C6 C 0 1 N N N 22.947 10.989 4.933 -0.718 0.902 -0.069 C07 V5Z 6 V5Z C09 C7 C 0 1 N N N 24.534 10.000 6.004 0.630 -0.764 0.317 C09 V5Z 7 V5Z C10 C8 C 0 1 N N N 25.721 9.091 6.312 1.107 -2.116 0.642 C10 V5Z 8 V5Z C14 C9 C 0 1 Y N N 24.243 10.946 8.182 2.851 0.287 0.004 C14 V5Z 9 V5Z C15 C10 C 0 1 Y N N 24.825 12.127 8.627 3.565 -0.024 1.153 C15 V5Z 10 V5Z C16 C11 C 0 1 Y N N 25.155 12.278 9.974 4.946 -0.049 1.121 C16 V5Z 11 V5Z C17 C12 C 0 1 Y N N 24.905 11.246 10.876 5.617 0.235 -0.054 C17 V5Z 12 V5Z C19 C13 C 0 1 N N N 25.765 12.720 12.570 7.486 -1.134 0.281 C19 V5Z 13 V5Z C20 C14 C 0 1 N N N 26.256 10.401 12.652 7.482 0.542 -1.435 C20 V5Z 14 V5Z C21 C15 C 0 1 N N N 24.056 11.162 13.105 7.542 1.189 0.874 C21 V5Z 15 V5Z C22 C16 C 0 1 Y N N 24.324 10.066 10.429 4.908 0.545 -1.201 C22 V5Z 16 V5Z C23 C17 C 0 1 Y N N 23.994 9.918 9.083 3.527 0.571 -1.175 C23 V5Z 17 V5Z C24 C18 C 0 1 N N N 22.945 11.420 6.248 0.668 1.381 -0.217 C24 V5Z 18 V5Z C26 C19 C 0 1 Y N N 20.723 11.125 1.899 -4.320 1.681 0.201 C26 V5Z 19 V5Z C27 C20 C 0 1 Y N N 20.421 10.520 0.685 -5.547 1.049 0.218 C27 V5Z 20 V5Z C29 C21 C 0 1 N N N 18.289 11.530 0.676 -6.497 3.122 0.892 C29 V5Z 21 V5Z C30 C22 C 0 1 Y N N 21.209 9.481 0.218 -5.652 -0.286 -0.170 C30 V5Z 22 V5Z N08 N1 N 0 1 N N N 23.936 10.123 4.814 -0.629 -0.414 0.260 N08 V5Z 23 V5Z N11 N2 N 0 1 N N N 25.759 7.916 5.886 0.266 -3.026 1.018 N11 V5Z 24 V5Z N13 N3 N 0 1 N N N 23.922 10.797 6.883 1.450 0.308 0.032 N13 V5Z 25 V5Z N18 N4 N 1 1 N N N 25.248 11.388 12.300 7.014 0.208 -0.083 N18 V5Z 26 V5Z O02 O1 O 0 1 N N N 23.090 8.002 0.487 -4.628 -2.290 -0.959 O02 V5Z 27 V5Z O12 O2 O 0 1 N N N 24.700 7.398 5.114 -1.088 -2.685 1.255 O12 V5Z 28 V5Z O25 O3 O 0 1 N N N 22.196 12.207 6.721 1.032 2.507 -0.504 O25 V5Z 29 V5Z O28 O4 O 0 1 N N N 19.322 10.954 -0.072 -6.656 1.730 0.613 O28 V5Z 30 V5Z O31 O5 O 0 1 N N N 20.909 8.865 -1.008 -6.862 -0.903 -0.152 O31 V5Z 31 V5Z H1 H1 H 0 1 N N N 24.840 7.555 -0.475 -2.712 -2.944 -0.548 H1 V5Z 32 V5Z H2 H2 H 0 1 N N N 24.024 9.071 -0.987 -3.655 -3.977 -1.648 H2 V5Z 33 V5Z H3 H3 H 0 1 N N N 24.875 8.998 0.594 -3.001 -2.426 -2.226 H3 V5Z 34 V5Z H4 H4 H 0 1 N N N 23.442 9.316 2.756 -2.410 -0.912 -0.911 H4 V5Z 35 V5Z H6 H6 H 0 1 N N N 21.573 12.333 4.186 -1.815 2.712 -0.364 H6 V5Z 36 V5Z H8 H8 H 0 1 N N N 26.540 9.468 6.907 2.159 -2.350 0.567 H8 V5Z 37 V5Z H9 H9 H 0 1 N N N 25.022 12.928 7.930 3.042 -0.245 2.072 H9 V5Z 38 V5Z H10 H10 H 0 1 N N N 25.605 13.197 10.318 5.502 -0.291 2.015 H10 V5Z 39 V5Z H11 H11 H 0 1 N N N 26.015 12.807 13.638 7.095 -1.862 -0.430 H11 V5Z 40 V5Z H12 H12 H 0 1 N N N 26.668 12.892 11.966 8.576 -1.155 0.258 H12 V5Z 41 V5Z H13 H13 H 0 1 N N N 25.002 13.469 12.310 7.139 -1.382 1.284 H13 V5Z 42 V5Z H14 H14 H 0 1 N N N 26.515 10.504 13.716 7.131 1.538 -1.705 H14 V5Z 43 V5Z H15 H15 H 0 1 N N N 25.861 9.391 12.467 8.571 0.522 -1.458 H15 V5Z 44 V5Z H16 H16 H 0 1 N N N 27.155 10.561 12.039 7.090 -0.186 -2.145 H16 V5Z 45 V5Z H17 H17 H 0 1 N N N 24.307 11.267 14.171 7.195 0.942 1.877 H17 V5Z 46 V5Z H18 H18 H 0 1 N N N 23.286 11.900 12.835 8.632 1.169 0.851 H18 V5Z 47 V5Z H19 H19 H 0 1 N N N 23.673 10.148 12.917 7.192 2.186 0.604 H19 V5Z 48 V5Z H20 H20 H 0 1 N N N 24.128 9.263 11.124 5.435 0.766 -2.117 H20 V5Z 49 V5Z H21 H21 H 0 1 N N N 23.542 8.999 8.739 2.975 0.813 -2.071 H21 V5Z 50 V5Z H22 H22 H 0 1 N N N 20.105 11.933 2.262 -4.240 2.714 0.502 H22 V5Z 51 V5Z H23 H23 H 0 1 N N N 17.476 11.838 0.003 -5.729 3.255 1.654 H23 V5Z 52 V5Z H24 H24 H 0 1 N N N 17.907 10.795 1.400 -6.199 3.643 -0.018 H24 V5Z 53 V5Z H25 H25 H 0 1 N N N 18.672 12.410 1.214 -7.441 3.531 1.252 H25 V5Z 54 V5Z H26 H26 H 0 1 N N N 24.891 6.498 4.876 -1.621 -3.411 1.608 H26 V5Z 55 V5Z H27 H27 H 0 1 N N N 21.541 8.177 -1.180 -7.354 -0.828 -0.981 H27 V5Z 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V5Z O31 C30 SING N N 1 V5Z C01 O02 SING N N 2 V5Z O28 C29 SING N N 3 V5Z O28 C27 SING N N 4 V5Z C30 C27 DOUB Y N 5 V5Z C30 C03 SING Y N 6 V5Z O02 C03 SING N N 7 V5Z C27 C26 SING Y N 8 V5Z C03 C04 DOUB Y N 9 V5Z C26 C05 DOUB Y N 10 V5Z C04 C05 SING Y N 11 V5Z C05 C06 SING N N 12 V5Z C06 C07 DOUB N Z 13 V5Z N08 C07 SING N N 14 V5Z N08 C09 DOUB N N 15 V5Z C07 C24 SING N N 16 V5Z O12 N11 SING N N 17 V5Z N11 C10 DOUB N Z 18 V5Z C09 C10 SING N N 19 V5Z C09 N13 SING N N 20 V5Z C24 O25 DOUB N N 21 V5Z C24 N13 SING N N 22 V5Z N13 C14 SING N N 23 V5Z C14 C15 DOUB Y N 24 V5Z C14 C23 SING Y N 25 V5Z C15 C16 SING Y N 26 V5Z C23 C22 DOUB Y N 27 V5Z C16 C17 DOUB Y N 28 V5Z C22 C17 SING Y N 29 V5Z C17 N18 SING N N 30 V5Z N18 C19 SING N N 31 V5Z N18 C20 SING N N 32 V5Z N18 C21 SING N N 33 V5Z C01 H1 SING N N 34 V5Z C01 H2 SING N N 35 V5Z C01 H3 SING N N 36 V5Z C04 H4 SING N N 37 V5Z C06 H6 SING N N 38 V5Z C10 H8 SING N N 39 V5Z C15 H9 SING N N 40 V5Z C16 H10 SING N N 41 V5Z C19 H11 SING N N 42 V5Z C19 H12 SING N N 43 V5Z C19 H13 SING N N 44 V5Z C20 H14 SING N N 45 V5Z C20 H15 SING N N 46 V5Z C20 H16 SING N N 47 V5Z C21 H17 SING N N 48 V5Z C21 H18 SING N N 49 V5Z C21 H19 SING N N 50 V5Z C22 H20 SING N N 51 V5Z C23 H21 SING N N 52 V5Z C26 H22 SING N N 53 V5Z C29 H23 SING N N 54 V5Z C29 H24 SING N N 55 V5Z C29 H25 SING N N 56 V5Z O12 H26 SING N N 57 V5Z O31 H27 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V5Z InChI InChI 1.03 "InChI=1S/C22H24N4O5/c1-26(2,3)16-8-6-15(7-9-16)25-20(13-23-29)24-17(22(25)28)10-14-11-18(30-4)21(27)19(12-14)31-5/h6-13H,1-5H3,(H-,23,24,27,28,29)/p+1" V5Z InChIKey InChI 1.03 GYWNIEJGWAVLAZ-UHFFFAOYSA-O V5Z SMILES_CANONICAL CACTVS 3.385 "COc1cc(cc(OC)c1O)\C=C\2N=C(\C=N/O)N(C\2=O)c3ccc(cc3)[N+](C)(C)C" V5Z SMILES CACTVS 3.385 "COc1cc(cc(OC)c1O)C=C2N=C(C=NO)N(C2=O)c3ccc(cc3)[N+](C)(C)C" V5Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[N+](C)(C)c1ccc(cc1)N2C(=N/C(=C\c3cc(c(c(c3)OC)O)OC)/C2=O)/C=N\O" V5Z SMILES "OpenEye OEToolkits" 2.0.7 "C[N+](C)(C)c1ccc(cc1)N2C(=NC(=Cc3cc(c(c(c3)OC)O)OC)C2=O)C=NO" # _pdbx_chem_comp_identifier.comp_id V5Z _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[4-[(4~{Z})-4-[(3,5-dimethoxy-4-oxidanyl-phenyl)methylidene]-2-[(~{Z})-hydroxyiminomethyl]-5-oxidanylidene-imidazol-1-yl]phenyl]-trimethyl-azanium" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id V5Z _pdbx_chem_comp_synonyms.name "[4-[(4Z)-4-[(3,5-dimethoxy-4-oxidanyl-phenyl)methylidene]-2-[(Z)-hydroxyiminomethyl]-5-oxidanylidene-imidazol-1-yl]phenyl]-trimethyl-azanium" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V5Z "Create component" 2021-04-19 PDBE V5Z "Initial release" 2021-06-16 RCSB ##