data_V62 # _chem_comp.id V62 _chem_comp.name "2-[[2,5-bis(bromanyl)-4-methyl-phenyl]methylamino]-4-(cyclohexylamino)-N-[3-(2-oxidanylidene-1,3-oxazolidin-3-yl)propyl]pyrimidine-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H32 Br2 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-19 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 624.368 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V62 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OAL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V62 C7 C1 C 0 1 Y N N 36.897 -23.622 -103.317 -2.171 -0.851 0.172 C7 V62 1 V62 C9 C2 C 0 1 Y N N 39.003 -21.989 -103.702 0.463 -0.339 0.026 C9 V62 2 V62 N1 N1 N 0 1 N N N 33.828 -28.487 -99.723 -8.954 1.893 0.435 N1 V62 3 V62 C2 C3 C 0 1 N N N 34.343 -27.023 -101.681 -6.711 0.923 0.350 C2 V62 4 V62 N2 N2 N 0 1 Y N N 39.144 -22.934 -102.773 -0.400 0.665 -0.073 N2 V62 5 V62 C10 C4 C 0 1 N N N 40.028 -20.033 -104.807 2.276 1.309 -0.236 C10 V62 6 V62 C4 C5 C 0 1 N N N 34.546 -29.230 -98.692 -9.324 2.666 1.631 C4 V62 7 V62 N3 N3 N 0 1 N N N 40.025 -21.115 -103.835 1.814 -0.068 -0.049 N3 V62 8 V62 N5 N4 N 0 1 N N N 35.958 -22.673 -105.339 -1.629 -3.197 0.461 N5 V62 9 V62 C6 C6 C 0 1 N N N 32.761 -27.839 -99.232 -9.404 2.536 -0.651 C6 V62 10 V62 BR1 BR1 BR 0 0 N N N 38.824 -18.717 -107.450 3.452 0.492 -2.986 BR1 V62 11 V62 C17 C7 C 0 1 Y N N 38.349 -18.306 -105.656 4.441 0.989 -1.452 C17 V62 12 V62 C16 C8 C 0 1 Y N N 37.368 -17.351 -105.457 5.823 1.016 -1.499 C16 V62 13 V62 C14 C9 C 0 1 Y N N 36.928 -17.024 -104.180 6.546 1.380 -0.379 C14 V62 14 V62 C15 C10 C 0 1 N N N 35.785 -16.061 -103.993 8.052 1.409 -0.430 C15 V62 15 V62 C13 C11 C 0 1 Y N N 37.549 -17.669 -103.122 5.887 1.717 0.790 C13 V62 16 V62 BR BR2 BR 0 0 N N N 37.093 -17.211 -101.341 6.876 2.214 2.323 BR V62 17 V62 C12 C12 C 0 1 Y N N 38.535 -18.632 -103.310 4.504 1.690 0.837 C12 V62 18 V62 C11 C13 C 0 1 Y N N 38.956 -18.980 -104.595 3.782 1.332 -0.285 C11 V62 19 V62 C8 C14 C 0 1 Y N N 38.086 -23.726 -102.597 -1.702 0.454 -0.006 C8 V62 20 V62 N4 N5 N 0 1 Y N N 37.936 -21.805 -104.492 0.068 -1.591 0.202 N4 V62 21 V62 C18 C15 C 0 1 Y N N 36.883 -22.639 -104.349 -1.222 -1.892 0.279 C18 V62 22 V62 C19 C16 C 0 1 N N N 34.905 -21.694 -105.595 -0.636 -4.249 0.688 C19 V62 23 V62 C24 C17 C 0 1 N N N 35.324 -20.291 -105.199 -1.283 -5.407 1.450 C24 V62 24 V62 C23 C18 C 0 1 N N N 34.162 -19.307 -105.339 -0.245 -6.506 1.686 C23 V62 25 V62 C22 C19 C 0 1 N N N 33.376 -19.556 -106.618 0.278 -7.011 0.340 C22 V62 26 V62 C21 C20 C 0 1 N N N 34.195 -20.354 -107.604 0.926 -5.853 -0.422 C21 V62 27 V62 C20 C21 C 0 1 N N N 34.514 -21.747 -107.062 -0.112 -4.754 -0.659 C20 V62 28 V62 C C22 C 0 1 N N N 35.758 -24.533 -102.983 -3.614 -1.132 0.252 C V62 29 V62 O O1 O 0 1 N N N 34.985 -24.906 -103.854 -4.008 -2.282 0.303 O V62 30 V62 N N6 N 0 1 N N N 35.640 -24.927 -101.717 -4.498 -0.116 0.268 N V62 31 V62 C1 C23 C 0 1 N N N 35.645 -26.337 -101.346 -5.934 -0.395 0.347 C1 V62 32 V62 C3 C24 C 0 1 N N N 34.218 -28.438 -101.135 -8.210 0.631 0.433 C3 V62 33 V62 O2 O2 O 0 1 N N N 31.889 -27.278 -99.840 -9.239 2.121 -1.782 O2 V62 34 V62 O1 O3 O 0 1 N N N 32.776 -27.894 -97.887 -10.050 3.674 -0.379 O1 V62 35 V62 C5 C25 C 0 1 N N N 33.939 -28.635 -97.440 -10.075 3.885 1.063 C5 V62 36 V62 H1 H1 H 0 1 N N N 33.521 -26.421 -101.267 -6.409 1.521 1.210 H1 V62 37 V62 H2 H2 H 0 1 N N N 34.250 -27.068 -102.776 -6.498 1.472 -0.567 H2 V62 38 V62 H3 H3 H 0 1 N N N 39.884 -20.471 -105.806 1.876 1.703 -1.171 H3 V62 39 V62 H4 H4 H 0 1 N N N 41.008 -19.536 -104.762 1.930 1.924 0.595 H4 V62 40 V62 H5 H5 H 0 1 N N N 34.352 -30.310 -98.762 -9.977 2.081 2.278 H5 V62 41 V62 H6 H6 H 0 1 N N N 35.630 -29.048 -98.742 -8.433 2.984 2.173 H6 V62 42 V62 H7 H7 H 0 1 N N N 40.834 -21.667 -104.037 2.458 -0.790 0.022 H7 V62 43 V62 H8 H8 H 0 1 N N N 35.477 -23.541 -105.212 -2.573 -3.418 0.439 H8 V62 44 V62 H9 H9 H 0 1 N N N 36.936 -16.850 -106.311 6.338 0.752 -2.412 H9 V62 45 V62 H10 H10 H 0 1 N N N 34.834 -16.614 -104.002 8.385 2.399 -0.742 H10 V62 46 V62 H11 H11 H 0 1 N N N 35.898 -15.541 -103.030 8.453 1.186 0.558 H11 V62 47 V62 H12 H12 H 0 1 N N N 35.788 -15.325 -104.810 8.406 0.665 -1.143 H12 V62 48 V62 H13 H13 H 0 1 N N N 38.980 -19.116 -102.453 3.990 1.954 1.749 H13 V62 49 V62 H14 H14 H 0 1 N N N 38.155 -24.500 -101.847 -2.395 1.278 -0.089 H14 V62 50 V62 H15 H15 H 0 1 N N N 34.021 -21.964 -104.999 0.192 -3.848 1.272 H15 V62 51 V62 H16 H16 H 0 1 N N N 35.663 -20.300 -104.153 -1.656 -5.047 2.409 H16 V62 52 V62 H17 H17 H 0 1 N N N 36.150 -19.966 -105.849 -2.111 -5.808 0.866 H17 V62 53 V62 H18 H18 H 0 1 N N N 34.561 -18.282 -105.358 0.582 -6.104 2.270 H18 V62 54 V62 H19 H19 H 0 1 N N N 33.489 -19.423 -104.477 -0.707 -7.331 2.229 H19 V62 55 V62 H20 H20 H 0 1 N N N 33.108 -18.590 -107.070 1.017 -7.794 0.509 H20 V62 56 V62 H21 H21 H 0 1 N N N 32.460 -20.114 -106.375 -0.550 -7.413 -0.244 H21 V62 57 V62 H22 H22 H 0 1 N N N 35.137 -19.822 -107.801 1.754 -5.452 0.162 H22 V62 58 V62 H23 H23 H 0 1 N N N 33.628 -20.455 -108.541 1.299 -6.213 -1.381 H23 V62 59 V62 H24 H24 H 0 1 N N N 33.626 -22.386 -107.173 -0.940 -5.156 -1.243 H24 V62 60 V62 H25 H25 H 0 1 N N N 35.347 -22.174 -107.639 0.349 -3.930 -1.202 H25 V62 61 V62 H26 H26 H 0 1 N N N 35.545 -24.236 -101.000 -4.184 0.801 0.227 H26 V62 62 V62 H27 H27 H 0 1 N N N 36.460 -26.842 -101.886 -6.147 -0.944 1.264 H27 V62 63 V62 H28 H28 H 0 1 N N N 35.818 -26.417 -100.263 -6.236 -0.993 -0.513 H28 V62 64 V62 H29 H29 H 0 1 N N N 33.459 -28.973 -101.725 -8.424 0.082 1.350 H29 V62 65 V62 H30 H30 H 0 1 N N N 35.190 -28.941 -101.246 -8.512 0.034 -0.427 H30 V62 66 V62 H31 H31 H 0 1 N N N 33.642 -29.431 -96.741 -11.102 3.906 1.428 H31 V62 67 V62 H32 H32 H 0 1 N N N 34.657 -27.963 -96.947 -9.557 4.808 1.323 H32 V62 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V62 C21 C20 SING N N 1 V62 C21 C22 SING N N 2 V62 BR1 C17 SING N N 3 V62 C20 C19 SING N N 4 V62 C22 C23 SING N N 5 V62 C17 C16 DOUB Y N 6 V62 C17 C11 SING Y N 7 V62 C19 N5 SING N N 8 V62 C19 C24 SING N N 9 V62 C16 C14 SING Y N 10 V62 C23 C24 SING N N 11 V62 N5 C18 SING N N 12 V62 C10 C11 SING N N 13 V62 C10 N3 SING N N 14 V62 C11 C12 DOUB Y N 15 V62 N4 C18 DOUB Y N 16 V62 N4 C9 SING Y N 17 V62 C18 C7 SING Y N 18 V62 C14 C15 SING N N 19 V62 C14 C13 DOUB Y N 20 V62 O C DOUB N N 21 V62 N3 C9 SING N N 22 V62 C9 N2 DOUB Y N 23 V62 C7 C SING N N 24 V62 C7 C8 DOUB Y N 25 V62 C12 C13 SING Y N 26 V62 C13 BR SING N N 27 V62 C N SING N N 28 V62 N2 C8 SING Y N 29 V62 N C1 SING N N 30 V62 C2 C1 SING N N 31 V62 C2 C3 SING N N 32 V62 C3 N1 SING N N 33 V62 O2 C6 DOUB N N 34 V62 N1 C6 SING N N 35 V62 N1 C4 SING N N 36 V62 C6 O1 SING N N 37 V62 C4 C5 SING N N 38 V62 O1 C5 SING N N 39 V62 C2 H1 SING N N 40 V62 C2 H2 SING N N 41 V62 C10 H3 SING N N 42 V62 C10 H4 SING N N 43 V62 C4 H5 SING N N 44 V62 C4 H6 SING N N 45 V62 N3 H7 SING N N 46 V62 N5 H8 SING N N 47 V62 C16 H9 SING N N 48 V62 C15 H10 SING N N 49 V62 C15 H11 SING N N 50 V62 C15 H12 SING N N 51 V62 C12 H13 SING N N 52 V62 C8 H14 SING N N 53 V62 C19 H15 SING N N 54 V62 C24 H16 SING N N 55 V62 C24 H17 SING N N 56 V62 C23 H18 SING N N 57 V62 C23 H19 SING N N 58 V62 C22 H20 SING N N 59 V62 C22 H21 SING N N 60 V62 C21 H22 SING N N 61 V62 C21 H23 SING N N 62 V62 C20 H24 SING N N 63 V62 C20 H25 SING N N 64 V62 N H26 SING N N 65 V62 C1 H27 SING N N 66 V62 C1 H28 SING N N 67 V62 C3 H29 SING N N 68 V62 C3 H30 SING N N 69 V62 C5 H31 SING N N 70 V62 C5 H32 SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V62 InChI InChI 1.03 "InChI=1S/C25H32Br2N6O3/c1-16-12-21(27)17(13-20(16)26)14-29-24-30-15-19(22(32-24)31-18-6-3-2-4-7-18)23(34)28-8-5-9-33-10-11-36-25(33)35/h12-13,15,18H,2-11,14H2,1H3,(H,28,34)(H2,29,30,31,32)" V62 InChIKey InChI 1.03 QHKXMFBRQDFRSF-UHFFFAOYSA-N V62 SMILES_CANONICAL CACTVS 3.385 "Cc1cc(Br)c(CNc2ncc(C(=O)NCCCN3CCOC3=O)c(NC4CCCCC4)n2)cc1Br" V62 SMILES CACTVS 3.385 "Cc1cc(Br)c(CNc2ncc(C(=O)NCCCN3CCOC3=O)c(NC4CCCCC4)n2)cc1Br" V62 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1Br)CNc2ncc(c(n2)NC3CCCCC3)C(=O)NCCCN4CCOC4=O)Br" V62 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1Br)CNc2ncc(c(n2)NC3CCCCC3)C(=O)NCCCN4CCOC4=O)Br" # _pdbx_chem_comp_identifier.comp_id V62 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[2,5-bis(bromanyl)-4-methyl-phenyl]methylamino]-4-(cyclohexylamino)-~{N}-[3-(2-oxidanylidene-1,3-oxazolidin-3-yl)propyl]pyrimidine-5-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V62 "Create component" 2021-04-19 PDBE V62 "Initial release" 2021-05-19 RCSB ##