data_V6B # _chem_comp.id V6B _chem_comp.name "2-[[2,5-bis(bromanyl)-4-methyl-phenyl]methylamino]-4-(cyclopentylamino)-N-[3-(2-oxidanylidene-1,3-oxazolidin-3-yl)propyl]pyrimidine-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H30 Br2 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-19 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 610.341 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V6B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OAK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V6B N1 N1 N 0 1 N N N 7.039 11.853 -16.879 -8.863 1.866 -0.481 N1 V6B 1 V6B C2 C1 C 0 1 N N N 7.415 10.256 -15.009 -6.639 0.863 -0.320 C2 V6B 2 V6B O2 O1 O 0 1 N N N 5.110 10.627 -16.944 -9.145 2.272 1.711 O2 V6B 3 V6B N3 N2 N 0 1 N N N 12.961 4.204 -12.921 1.866 -0.259 0.153 N3 V6B 4 V6B C4 C2 C 0 1 N N N 8.058 12.250 -17.847 -9.226 2.545 -1.735 C4 V6B 5 V6B N4 N3 N 0 1 Y N N 10.915 4.950 -12.230 0.091 -1.763 0.032 N4 V6B 6 V6B C5 C3 C 0 1 N N N 7.290 12.115 -19.138 -9.956 3.817 -1.265 C5 V6B 7 V6B C6 C4 C 0 1 N N N 6.000 11.243 -17.465 -9.303 2.598 0.552 C6 V6B 8 V6B BR1 BR1 BR 0 0 N N N 12.022 1.897 -9.170 3.520 0.285 2.977 BR1 V6B 9 V6B C17 C5 C 0 1 Y N N 11.344 1.524 -10.895 4.516 0.768 1.443 C17 V6B 10 V6B C16 C6 C 0 1 Y N N 10.331 0.591 -11.002 5.898 0.765 1.487 C16 V6B 11 V6B C14 C7 C 0 1 Y N N 9.829 0.216 -12.237 6.626 1.118 0.366 C14 V6B 12 V6B C15 C8 C 0 1 N N N 8.652 -0.713 -12.328 8.132 1.115 0.414 C15 V6B 13 V6B C13 C9 C 0 1 Y N N 10.420 0.797 -13.347 5.971 1.474 -0.800 C13 V6B 14 V6B BR BR2 BR 0 0 N N N 9.985 0.187 -15.069 6.966 1.964 -2.331 BR V6B 15 V6B C12 C10 C 0 1 Y N N 11.411 1.754 -13.246 4.589 1.476 -0.844 C12 V6B 16 V6B C11 C11 C 0 1 Y N N 11.900 2.143 -12.007 3.861 1.118 0.276 C11 V6B 17 V6B C10 C12 C 0 1 N N N 12.995 3.176 -11.896 2.355 1.120 0.228 C10 V6B 18 V6B C9 C13 C 0 1 Y N N 11.970 5.112 -13.026 0.511 -0.508 0.100 C9 V6B 19 V6B N2 N4 N 0 1 Y N N 12.103 6.031 -13.989 -0.333 0.517 0.118 N2 V6B 20 V6B C8 C14 C 0 1 Y N N 11.062 6.849 -14.152 -1.638 0.327 0.068 C8 V6B 21 V6B C18 C15 C 0 1 Y N N 9.845 5.753 -12.425 -1.206 -2.044 -0.021 C18 V6B 22 V6B N5 N5 N 0 1 N N N 8.786 5.618 -11.602 -1.638 -3.351 -0.091 N5 V6B 23 V6B C19 C16 C 0 1 N N N 8.580 4.490 -10.710 -0.665 -4.438 -0.227 C19 V6B 24 V6B C23 C17 C 0 1 N N N 7.844 3.334 -11.405 -0.357 -4.688 -1.718 C23 V6B 25 V6B C22 C18 C 0 1 N N N 6.726 2.930 -10.435 -0.199 -6.225 -1.821 C22 V6B 26 V6B C21 C19 C 0 1 N N N 7.041 3.564 -9.166 -1.288 -6.747 -0.850 C21 V6B 27 V6B C20 C20 C 0 1 N N N 7.672 4.848 -9.545 -1.257 -5.747 0.325 C20 V6B 28 V6B C7 C21 C 0 1 Y N N 9.879 6.762 -13.434 -2.133 -0.980 -0.004 C7 V6B 29 V6B C C22 C 0 1 N N N 8.778 7.731 -13.735 -3.581 -1.238 -0.060 C V6B 30 V6B O O2 O 0 1 N N N 8.014 8.110 -12.844 -3.997 -2.380 -0.019 O V6B 31 V6B N N6 N 0 1 N N N 8.648 8.133 -15.006 -4.446 -0.209 -0.157 N V6B 32 V6B C1 C23 C 0 1 N N N 8.683 9.538 -15.384 -5.887 -0.466 -0.212 C1 V6B 33 V6B C3 C24 C 0 1 N N N 7.343 11.701 -15.459 -8.144 0.594 -0.378 C3 V6B 34 V6B O1 O3 O 0 1 N N N 6.086 11.380 -18.799 -9.930 3.723 0.189 O1 V6B 35 V6B H1 H1 H 0 1 N N N 7.321 10.234 -13.913 -6.413 1.479 0.550 H1 V6B 36 V6B H2 H2 H 0 1 N N N 6.570 9.715 -15.460 -6.327 1.384 -1.225 H2 V6B 37 V6B H3 H3 H 0 1 N N N 12.983 3.720 -13.796 2.496 -0.996 0.141 H3 V6B 38 V6B H4 H4 H 0 1 N N N 8.926 11.575 -17.820 -8.332 2.804 -2.302 H4 V6B 39 V6B H5 H5 H 0 1 N N N 8.392 13.285 -17.681 -9.888 1.918 -2.332 H5 V6B 40 V6B H6 H6 H 0 1 N N N 7.882 11.561 -19.881 -9.422 4.707 -1.600 H6 V6B 41 V6B H7 H7 H 0 1 N N N 7.035 13.107 -19.539 -10.984 3.828 -1.628 H7 V6B 42 V6B H8 H8 H 0 1 N N N 9.923 0.146 -10.106 6.410 0.488 2.397 H8 V6B 43 V6B H9 H9 H 0 1 N N N 9.008 -1.751 -12.396 8.503 0.132 0.121 H9 V6B 44 V6B H10 H10 H 0 1 N N N 8.025 -0.599 -11.432 8.519 1.868 -0.273 H10 V6B 45 V6B H11 H11 H 0 1 N N N 8.061 -0.469 -13.223 8.464 1.342 1.427 H11 V6B 46 V6B H12 H12 H 0 1 N N N 11.810 2.205 -14.142 4.078 1.753 -1.754 H12 V6B 47 V6B H13 H13 H 0 1 N N N 13.963 2.658 -11.961 2.020 1.673 -0.650 H13 V6B 48 V6B H14 H14 H 0 1 N N N 12.906 3.666 -10.915 1.964 1.596 1.128 H14 V6B 49 V6B H15 H15 H 0 1 N N N 11.146 7.631 -14.892 -2.315 1.169 0.084 H15 V6B 50 V6B H16 H16 H 0 1 N N N 8.796 6.428 -11.015 -2.586 -3.551 -0.051 H16 V6B 51 V6B H17 H17 H 0 1 N N N 9.544 4.126 -10.324 0.251 -4.188 0.307 H17 V6B 52 V6B H18 H18 H 0 1 N N N 7.421 3.667 -12.364 -1.184 -4.347 -2.341 H18 V6B 53 V6B H19 H19 H 0 1 N N N 8.528 2.490 -11.579 0.568 -4.189 -2.005 H19 V6B 54 V6B H20 H20 H 0 1 N N N 5.753 3.283 -10.807 -0.393 -6.567 -2.837 H20 V6B 55 V6B H21 H21 H 0 1 N N N 6.699 1.837 -10.319 0.793 -6.535 -1.491 H21 V6B 56 V6B H22 H22 H 0 1 N N N 6.127 3.737 -8.580 -2.265 -6.738 -1.332 H22 V6B 57 V6B H23 H23 H 0 1 N N N 7.738 2.944 -8.583 -1.042 -7.751 -0.505 H23 V6B 58 V6B H24 H24 H 0 1 N N N 8.256 5.258 -8.707 -0.627 -6.132 1.127 H24 V6B 59 V6B H25 H25 H 0 1 N N N 6.911 5.580 -9.854 -2.268 -5.573 0.694 H25 V6B 60 V6B H26 H26 H 0 1 N N N 8.523 7.444 -15.720 -4.114 0.702 -0.189 H26 V6B 61 V6B H27 H27 H 0 1 N N N 8.822 9.609 -16.473 -6.199 -0.987 0.693 H27 V6B 62 V6B H28 H28 H 0 1 N N N 9.529 10.022 -14.874 -6.113 -1.082 -1.082 H28 V6B 63 V6B H29 H29 H 0 1 N N N 8.314 12.177 -15.258 -8.455 0.073 0.527 H29 V6B 64 V6B H30 H30 H 0 1 N N N 6.558 12.208 -14.878 -8.369 -0.022 -1.248 H30 V6B 65 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V6B C5 O1 SING N N 1 V6B C5 C4 SING N N 2 V6B O1 C6 SING N N 3 V6B C4 N1 SING N N 4 V6B C6 O2 DOUB N N 5 V6B C6 N1 SING N N 6 V6B N1 C3 SING N N 7 V6B C3 C2 SING N N 8 V6B C1 C2 SING N N 9 V6B C1 N SING N N 10 V6B BR C13 SING N N 11 V6B N C SING N N 12 V6B C8 N2 DOUB Y N 13 V6B C8 C7 SING Y N 14 V6B N2 C9 SING Y N 15 V6B C C7 SING N N 16 V6B C O DOUB N N 17 V6B C7 C18 DOUB Y N 18 V6B C13 C12 DOUB Y N 19 V6B C13 C14 SING Y N 20 V6B C12 C11 SING Y N 21 V6B C9 N3 SING N N 22 V6B C9 N4 DOUB Y N 23 V6B N3 C10 SING N N 24 V6B C18 N4 SING Y N 25 V6B C18 N5 SING N N 26 V6B C15 C14 SING N N 27 V6B C14 C16 DOUB Y N 28 V6B C11 C10 SING N N 29 V6B C11 C17 DOUB Y N 30 V6B N5 C19 SING N N 31 V6B C23 C19 SING N N 32 V6B C23 C22 SING N N 33 V6B C16 C17 SING Y N 34 V6B C17 BR1 SING N N 35 V6B C19 C20 SING N N 36 V6B C22 C21 SING N N 37 V6B C20 C21 SING N N 38 V6B C2 H1 SING N N 39 V6B C2 H2 SING N N 40 V6B N3 H3 SING N N 41 V6B C4 H4 SING N N 42 V6B C4 H5 SING N N 43 V6B C5 H6 SING N N 44 V6B C5 H7 SING N N 45 V6B C16 H8 SING N N 46 V6B C15 H9 SING N N 47 V6B C15 H10 SING N N 48 V6B C15 H11 SING N N 49 V6B C12 H12 SING N N 50 V6B C10 H13 SING N N 51 V6B C10 H14 SING N N 52 V6B C8 H15 SING N N 53 V6B N5 H16 SING N N 54 V6B C19 H17 SING N N 55 V6B C23 H18 SING N N 56 V6B C23 H19 SING N N 57 V6B C22 H20 SING N N 58 V6B C22 H21 SING N N 59 V6B C21 H22 SING N N 60 V6B C21 H23 SING N N 61 V6B C20 H24 SING N N 62 V6B C20 H25 SING N N 63 V6B N H26 SING N N 64 V6B C1 H27 SING N N 65 V6B C1 H28 SING N N 66 V6B C3 H29 SING N N 67 V6B C3 H30 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V6B InChI InChI 1.03 "InChI=1S/C24H30Br2N6O3/c1-15-11-20(26)16(12-19(15)25)13-28-23-29-14-18(21(31-23)30-17-5-2-3-6-17)22(33)27-7-4-8-32-9-10-35-24(32)34/h11-12,14,17H,2-10,13H2,1H3,(H,27,33)(H2,28,29,30,31)" V6B InChIKey InChI 1.03 BPLPIBNWDLPUKP-UHFFFAOYSA-N V6B SMILES_CANONICAL CACTVS 3.385 "Cc1cc(Br)c(CNc2ncc(C(=O)NCCCN3CCOC3=O)c(NC4CCCC4)n2)cc1Br" V6B SMILES CACTVS 3.385 "Cc1cc(Br)c(CNc2ncc(C(=O)NCCCN3CCOC3=O)c(NC4CCCC4)n2)cc1Br" V6B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1Br)CNc2ncc(c(n2)NC3CCCC3)C(=O)NCCCN4CCOC4=O)Br" V6B SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1Br)CNc2ncc(c(n2)NC3CCCC3)C(=O)NCCCN4CCOC4=O)Br" # _pdbx_chem_comp_identifier.comp_id V6B _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[2,5-bis(bromanyl)-4-methyl-phenyl]methylamino]-4-(cyclopentylamino)-~{N}-[3-(2-oxidanylidene-1,3-oxazolidin-3-yl)propyl]pyrimidine-5-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V6B "Create component" 2021-04-20 PDBE V6B "Initial release" 2021-05-19 RCSB ##