data_V6E # _chem_comp.id V6E _chem_comp.name "4-(cyclopentylamino)-2-[(3,4-dichlorophenyl)methylamino]-N-[3-(2-oxidanylidenepyrrolidin-1-yl)propyl]pyrimidine-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H30 Cl2 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-19 _chem_comp.pdbx_modified_date 2021-05-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 505.440 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V6E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OAJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V6E C7 C1 C 0 1 N N N 24.484 55.201 35.812 8.546 -2.259 -1.112 C7 V6E 1 V6E C9 C2 C 0 1 Y N N 30.162 50.558 38.753 0.864 -0.540 0.449 C9 V6E 2 V6E N1 N1 N 0 1 N N N 25.646 55.517 36.411 8.169 -1.704 0.052 N1 V6E 3 V6E C2 C3 C 0 1 N N N 27.043 54.450 38.159 5.893 -0.817 0.178 C2 V6E 4 V6E N2 N2 N 0 1 Y N N 31.154 49.669 38.894 -0.431 -0.796 0.460 N2 V6E 5 V6E C10 C4 C 0 1 Y N N 30.943 48.711 39.816 -1.324 0.186 0.442 C10 V6E 6 V6E C4 C5 C 0 1 N N N 26.697 55.951 35.485 8.644 -2.490 1.197 C4 V6E 7 V6E N3 N3 N 0 1 N N N 31.895 47.768 39.951 -2.667 -0.132 0.455 N3 V6E 8 V6E N5 N4 N 0 1 N N N 27.729 49.283 41.117 0.682 3.136 0.369 N5 V6E 9 V6E C6 C6 C 0 1 N N N 24.573 55.563 34.361 9.346 -3.517 -0.854 C6 V6E 10 V6E CL1 CL1 CL 0 0 N N N 28.293 43.810 38.557 -7.543 -1.804 -2.189 CL1 V6E 11 V6E C16 C7 C 0 1 Y N N 29.015 44.412 40.006 -6.669 -1.736 -0.690 C16 V6E 12 V6E C15 C8 C 0 1 Y N N 28.595 43.956 41.240 -7.354 -1.755 0.513 C15 V6E 13 V6E CL CL2 CL 0 0 N N N 27.147 43.000 41.394 -9.088 -1.848 0.524 CL V6E 14 V6E C14 C9 C 0 1 Y N N 29.248 44.376 42.379 -6.657 -1.701 1.706 C14 V6E 15 V6E C13 C10 C 0 1 Y N N 30.285 45.289 42.285 -5.276 -1.628 1.697 C13 V6E 16 V6E C17 C11 C 0 1 Y N N 30.040 45.341 39.909 -5.287 -1.669 -0.697 C17 V6E 17 V6E C12 C12 C 0 1 Y N N 30.696 45.789 41.052 -4.592 -1.609 0.496 C12 V6E 18 V6E C11 C13 C 0 1 N N N 31.889 46.721 40.974 -3.087 -1.535 0.488 C11 V6E 19 V6E N4 N5 N 0 1 Y N N 29.848 48.575 40.575 -0.967 1.461 0.413 N4 V6E 20 V6E C18 C14 C 0 1 Y N N 28.839 49.448 40.398 0.315 1.807 0.400 C18 V6E 21 V6E C19 C15 C 0 1 N N N 27.487 48.157 42.011 -0.340 4.176 0.232 C19 V6E 22 V6E C23 C16 C 0 1 N N N 26.487 47.210 41.419 -0.624 4.445 -1.260 C23 V6E 23 V6E C22 C17 C 0 1 N N N 25.762 46.609 42.616 -0.857 5.974 -1.333 C22 V6E 24 V6E C21 C18 C 0 1 N N N 26.063 47.411 43.760 0.180 6.526 -0.324 C21 V6E 25 V6E C20 C19 C 0 1 N N N 26.820 48.614 43.262 0.171 5.499 0.827 C20 V6E 26 V6E C8 C20 C 0 1 Y N N 28.951 50.500 39.451 1.294 0.791 0.418 C8 V6E 27 V6E C C21 C 0 1 N N N 27.826 51.461 39.197 2.728 1.122 0.405 C V6E 28 V6E O O1 O 0 1 N N N 26.890 51.547 39.998 3.085 2.283 0.482 O V6E 29 V6E N N6 N 0 1 N N N 27.832 52.133 38.044 3.646 0.140 0.308 N V6E 30 V6E C1 C22 C 0 1 N N N 26.756 53.034 37.670 5.073 0.470 0.295 C1 V6E 31 V6E C3 C23 C 0 1 N N N 25.900 55.388 37.854 7.384 -0.472 0.164 C3 V6E 32 V6E O1 O2 O 0 1 N N N 23.546 54.653 36.373 8.281 -1.819 -2.211 O1 V6E 33 V6E C5 C24 C 0 1 N N N 26.024 55.956 34.132 9.754 -3.406 0.635 C5 V6E 34 V6E H1 H1 H 0 1 N N N 30.306 51.371 38.057 1.582 -1.347 0.468 H1 V6E 35 V6E H2 H2 H 0 1 N N N 27.204 54.426 39.247 5.677 -1.463 1.028 H2 V6E 36 V6E H3 H3 H 0 1 N N N 27.951 54.822 37.662 5.631 -1.332 -0.746 H3 V6E 37 V6E H4 H4 H 0 1 N N N 27.542 55.247 35.497 9.051 -1.831 1.964 H4 V6E 38 V6E H5 H5 H 0 1 N N N 31.922 47.287 39.075 -3.332 0.573 0.443 H5 V6E 39 V6E H6 H6 H 0 1 N N N 27.653 50.101 41.687 1.618 3.382 0.438 H6 V6E 40 V6E H7 H7 H 0 1 N N N 23.905 56.407 34.133 8.729 -4.401 -1.017 H7 V6E 41 V6E H8 H8 H 0 1 N N N 24.304 54.702 33.732 10.229 -3.546 -1.492 H8 V6E 42 V6E H9 H9 H 0 1 N N N 28.951 43.993 43.344 -7.191 -1.715 2.645 H9 V6E 43 V6E H10 H10 H 0 1 N N N 30.784 45.619 43.184 -4.732 -1.585 2.629 H10 V6E 44 V6E H11 H11 H 0 1 N N N 30.331 45.719 38.940 -4.752 -1.658 -1.635 H11 V6E 45 V6E H12 H12 H 0 1 N N N 32.778 46.096 40.803 -2.703 -2.050 -0.393 H12 V6E 46 V6E H13 H13 H 0 1 N N N 31.974 47.221 41.950 -2.695 -2.011 1.387 H13 V6E 47 V6E H14 H14 H 0 1 N N N 28.424 47.630 42.244 -1.256 3.868 0.737 H14 V6E 48 V6E H15 H15 H 0 1 N N N 25.781 47.748 40.769 0.234 4.160 -1.869 H15 V6E 49 V6E H16 H16 H 0 1 N N N 26.994 46.425 40.839 -1.516 3.907 -1.582 H16 V6E 50 V6E H17 H17 H 0 1 N N N 24.677 46.609 42.434 -0.656 6.348 -2.337 H17 V6E 51 V6E H18 H18 H 0 1 N N N 26.106 45.577 42.782 -1.871 6.226 -1.022 H18 V6E 52 V6E H19 H19 H 0 1 N N N 25.133 47.727 44.256 1.168 6.578 -0.781 H19 V6E 53 V6E H20 H20 H 0 1 N N N 26.681 46.842 44.469 -0.124 7.509 0.037 H20 V6E 54 V6E H21 H21 H 0 1 N N N 27.566 48.935 44.003 -0.497 5.834 1.621 H21 V6E 55 V6E H22 H22 H 0 1 N N N 26.131 49.445 43.052 1.180 5.368 1.219 H22 V6E 56 V6E H23 H23 H 0 1 N N N 28.602 52.012 37.417 3.362 -0.785 0.247 H23 V6E 57 V6E H24 H24 H 0 1 N N N 26.658 53.043 36.574 5.336 0.985 1.219 H24 V6E 58 V6E H25 H25 H 0 1 N N N 25.816 52.680 38.120 5.289 1.117 -0.555 H25 V6E 59 V6E H26 H26 H 0 1 N N N 26.141 56.382 38.260 7.646 0.043 1.088 H26 V6E 60 V6E H27 H27 H 0 1 N N N 24.990 55.005 38.339 7.599 0.175 -0.686 H27 V6E 61 V6E H28 H28 H 0 1 N N N 26.512 55.231 33.464 10.736 -2.944 0.737 H28 V6E 62 V6E H29 H29 H 0 1 N N N 27.055 56.958 35.746 7.831 -3.089 1.607 H29 V6E 63 V6E H30 H30 H 0 1 N N N 26.078 56.960 33.686 9.732 -4.382 1.120 H30 V6E 64 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V6E C5 C6 SING N N 1 V6E C5 C4 SING N N 2 V6E C6 C7 SING N N 3 V6E C4 N1 SING N N 4 V6E C7 O1 DOUB N N 5 V6E C7 N1 SING N N 6 V6E N1 C3 SING N N 7 V6E C1 N SING N N 8 V6E C1 C2 SING N N 9 V6E C3 C2 SING N N 10 V6E N C SING N N 11 V6E CL1 C16 SING N N 12 V6E C9 N2 DOUB Y N 13 V6E C9 C8 SING Y N 14 V6E N2 C10 SING Y N 15 V6E C C8 SING N N 16 V6E C O DOUB N N 17 V6E C8 C18 DOUB Y N 18 V6E C10 N3 SING N N 19 V6E C10 N4 DOUB Y N 20 V6E C17 C16 DOUB Y N 21 V6E C17 C12 SING Y N 22 V6E N3 C11 SING N N 23 V6E C16 C15 SING Y N 24 V6E C18 N4 SING Y N 25 V6E C18 N5 SING N N 26 V6E C11 C12 SING N N 27 V6E C12 C13 DOUB Y N 28 V6E N5 C19 SING N N 29 V6E C15 CL SING N N 30 V6E C15 C14 DOUB Y N 31 V6E C23 C19 SING N N 32 V6E C23 C22 SING N N 33 V6E C19 C20 SING N N 34 V6E C13 C14 SING Y N 35 V6E C22 C21 SING N N 36 V6E C20 C21 SING N N 37 V6E C9 H1 SING N N 38 V6E C2 H2 SING N N 39 V6E C2 H3 SING N N 40 V6E C4 H4 SING N N 41 V6E N3 H5 SING N N 42 V6E N5 H6 SING N N 43 V6E C6 H7 SING N N 44 V6E C6 H8 SING N N 45 V6E C14 H9 SING N N 46 V6E C13 H10 SING N N 47 V6E C17 H11 SING N N 48 V6E C11 H12 SING N N 49 V6E C11 H13 SING N N 50 V6E C19 H14 SING N N 51 V6E C23 H15 SING N N 52 V6E C23 H16 SING N N 53 V6E C22 H17 SING N N 54 V6E C22 H18 SING N N 55 V6E C21 H19 SING N N 56 V6E C21 H20 SING N N 57 V6E C20 H21 SING N N 58 V6E C20 H22 SING N N 59 V6E N H23 SING N N 60 V6E C1 H24 SING N N 61 V6E C1 H25 SING N N 62 V6E C3 H26 SING N N 63 V6E C3 H27 SING N N 64 V6E C5 H28 SING N N 65 V6E C4 H29 SING N N 66 V6E C5 H30 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V6E InChI InChI 1.03 "InChI=1S/C24H30Cl2N6O2/c25-19-9-8-16(13-20(19)26)14-28-24-29-15-18(22(31-24)30-17-5-1-2-6-17)23(34)27-10-4-12-32-11-3-7-21(32)33/h8-9,13,15,17H,1-7,10-12,14H2,(H,27,34)(H2,28,29,30,31)" V6E InChIKey InChI 1.03 YQQNQEYAEXRCJS-UHFFFAOYSA-N V6E SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(CNc2ncc(C(=O)NCCCN3CCCC3=O)c(NC4CCCC4)n2)cc1Cl" V6E SMILES CACTVS 3.385 "Clc1ccc(CNc2ncc(C(=O)NCCCN3CCCC3=O)c(NC4CCCC4)n2)cc1Cl" V6E SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CNc2ncc(c(n2)NC3CCCC3)C(=O)NCCCN4CCCC4=O)Cl)Cl" V6E SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CNc2ncc(c(n2)NC3CCCC3)C(=O)NCCCN4CCCC4=O)Cl)Cl" # _pdbx_chem_comp_identifier.comp_id V6E _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-(cyclopentylamino)-2-[(3,4-dichlorophenyl)methylamino]-~{N}-[3-(2-oxidanylidenepyrrolidin-1-yl)propyl]pyrimidine-5-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V6E "Create component" 2021-04-20 PDBE V6E "Initial release" 2021-05-19 RCSB ##