data_V6W # _chem_comp.id V6W _chem_comp.name NE-Acetyl-L-tryptophan _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C13 H14 N2 O4" _chem_comp.mon_nstd_parent_comp_id TRP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-20 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 262.261 _chem_comp.one_letter_code W _chem_comp.three_letter_code V6W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OAZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V6W C C1 C 0 1 N N N N Y Y -2.319 -13.477 16.351 -4.249 -0.857 -0.020 C V6W 1 V6W CA C2 C 0 1 N N S N Y N -3.371 -13.107 15.290 -2.866 -0.430 -0.440 CA V6W 2 V6W CB C3 C 0 1 N N N N N N -4.711 -13.757 15.782 -1.896 -0.621 0.727 CB V6W 3 V6W CG C4 C 0 1 Y N N N N N -5.244 -12.996 17.014 -0.494 -0.312 0.271 CG V6W 4 V6W CD1 C5 C 0 1 Y N N N N N -5.092 -13.311 18.359 0.417 -1.196 -0.166 CD1 V6W 5 V6W C24 C6 C 0 1 N N N N N N -5.691 -12.336 20.578 2.787 -1.194 -1.006 C24 V6W 6 V6W CE2 C7 C 0 1 Y N N N N N -6.229 -11.413 18.288 1.437 0.804 -0.269 CE2 V6W 7 V6W O O1 O 0 1 N N N N Y Y -1.976 -14.602 16.488 -5.065 -0.027 0.305 O V6W 8 V6W NE1 N1 N 0 1 Y N N N N N -5.700 -12.368 19.089 1.577 -0.547 -0.493 NE1 V6W 9 V6W C25 C8 C 0 1 N N N N N N -6.761 -13.113 21.261 3.728 -1.478 0.136 C25 V6W 10 V6W O26 O2 O 0 1 N N N N N N -7.660 -13.662 20.604 3.420 -1.171 1.263 O26 V6W 11 V6W O27 O3 O 0 1 N N N N N N -6.690 -13.168 22.512 4.909 -2.071 -0.099 O27 V6W 12 V6W CD2 C9 C 0 1 Y N N N N N -5.976 -11.773 16.967 0.132 1.012 0.214 CD2 V6W 13 V6W CE3 C10 C 0 1 Y N N N N N -6.403 -10.949 15.927 -0.298 2.303 0.526 CE3 V6W 14 V6W CZ3 C11 C 0 1 Y N N N N N -7.125 -9.780 16.242 0.551 3.360 0.357 CZ3 V6W 15 V6W CH2 C12 C 0 1 Y N N N N N -7.393 -9.440 17.554 1.839 3.161 -0.122 CH2 V6W 16 V6W CZ2 C13 C 0 1 Y N N N N N -6.955 -10.240 18.594 2.283 1.895 -0.436 CZ2 V6W 17 V6W N N2 N 0 1 N N N Y Y N -3.039 -13.686 14.012 -2.889 0.985 -0.832 N V6W 18 V6W HA H2 H 0 1 N N N N Y N -3.484 -12.015 15.227 -2.541 -1.036 -1.286 HA V6W 19 V6W HB2 H3 H 0 1 N N N N N N -5.457 -13.711 14.974 -2.170 0.051 1.541 HB2 V6W 20 V6W HB3 H4 H 0 1 N N N N N N -4.529 -14.807 16.053 -1.946 -1.653 1.076 HB3 V6W 21 V6W HD1 H5 H 0 1 N N N N N N -4.571 -14.172 18.750 0.258 -2.261 -0.248 HD1 V6W 22 V6W H6 H6 H 0 1 N N N N N N -4.722 -12.732 20.916 2.518 -2.130 -1.497 H6 V6W 23 V6W H7 H7 H 0 1 N N N N N N -5.788 -11.286 20.891 3.275 -0.535 -1.724 H7 V6W 24 V6W H8 H8 H 0 1 N N N N N N -7.415 -13.682 22.848 5.479 -2.232 0.666 H8 V6W 25 V6W HE3 H9 H 0 1 N N N N N N -6.185 -11.201 14.900 -1.298 2.465 0.899 HE3 V6W 26 V6W HZ3 H10 H 0 1 N N N N N N -7.474 -9.140 15.445 0.218 4.358 0.598 HZ3 V6W 27 V6W HH2 H11 H 0 1 N N N N N N -7.950 -8.540 17.770 2.498 4.006 -0.250 HH2 V6W 28 V6W HZ2 H12 H 0 1 N N N N N N -7.164 -9.973 19.620 3.283 1.752 -0.818 HZ2 V6W 29 V6W H H13 H 0 1 N N N Y Y N -2.186 -13.287 13.676 -3.187 1.568 -0.064 H V6W 30 V6W H2 H14 H 0 1 N Y N Y Y N -2.927 -14.675 14.113 -1.988 1.279 -1.179 H2 V6W 31 V6W OXT OXT O 0 1 N Y N N Y Y -1.805 -12.473 17.194 -4.576 -2.158 -0.011 OXT V6W 32 V6W HXT HXT H 0 1 N Y N N Y Y -1.199 -12.860 17.815 -5.476 -2.383 0.262 H1 V6W 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V6W N CA SING N N 1 V6W CA CB SING N N 2 V6W CA C SING N N 3 V6W CB CG SING N N 4 V6W CE3 CZ3 DOUB Y N 5 V6W CE3 CD2 SING Y N 6 V6W CZ3 CH2 SING Y N 7 V6W C O DOUB N N 8 V6W CD2 CG SING Y N 9 V6W CD2 CE2 DOUB Y N 10 V6W CG CD1 DOUB Y N 11 V6W CH2 CZ2 DOUB Y N 12 V6W CE2 CZ2 SING Y N 13 V6W CE2 NE1 SING Y N 14 V6W CD1 NE1 SING Y N 15 V6W NE1 C24 SING N N 16 V6W C24 C25 SING N N 17 V6W O26 C25 DOUB N N 18 V6W C25 O27 SING N N 19 V6W CA HA SING N N 20 V6W CB HB2 SING N N 21 V6W CB HB3 SING N N 22 V6W CD1 HD1 SING N N 23 V6W C24 H6 SING N N 24 V6W C24 H7 SING N N 25 V6W O27 H8 SING N N 26 V6W CE3 HE3 SING N N 27 V6W CZ3 HZ3 SING N N 28 V6W CH2 HH2 SING N N 29 V6W CZ2 HZ2 SING N N 30 V6W N H SING N N 31 V6W N H2 SING N N 32 V6W OXT C SING N N 33 V6W OXT HXT SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V6W InChI InChI 1.06 "InChI=1S/C13H14N2O4/c14-10(13(18)19)5-8-6-15(7-12(16)17)11-4-2-1-3-9(8)11/h1-4,6,10H,5,7,14H2,(H,16,17)(H,18,19)/t10-/m0/s1" V6W InChIKey InChI 1.06 NUIINCMATQEUSS-JTQLQIEISA-N V6W SMILES_CANONICAL CACTVS 3.385 "N[C@@H](Cc1cn(CC(O)=O)c2ccccc12)C(O)=O" V6W SMILES CACTVS 3.385 "N[CH](Cc1cn(CC(O)=O)c2ccccc12)C(O)=O" V6W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(cn2CC(=O)O)C[C@@H](C(=O)O)N" V6W SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(cn2CC(=O)O)CC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id V6W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-3-[1-(2-hydroxy-2-oxoethyl)indol-3-yl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V6W "Create component" 2021-04-20 PDBE V6W "Modify leaving atom flag" 2022-08-08 PDBE V6W "Initial release" 2023-08-16 RCSB V6W "Modify backbone" 2023-11-03 PDBE V6W "Other modification" 2024-06-28 PDBE V6W "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id V6W _pdbx_chem_comp_pcm.modified_residue_id TRP _pdbx_chem_comp_pcm.type Carboxymethylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #