data_V70 # _chem_comp.id V70 _chem_comp.name "ruthenium polypyridyl complex (delta enantiomer)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H24 N6 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2023-02-23 _chem_comp.pdbx_modified_date 2024-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 665.707 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V70 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CMM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V70 C01 C1 C 0 1 Y N N N N N -18.044 -12.789 -16.128 -2.311 2.054 0.541 C01 V70 1 V70 C02 C2 C 0 1 Y N N N N N -16.373 -13.338 -10.224 3.474 0.957 1.087 C02 V70 2 V70 C03 C3 C 0 1 Y N N N N N -16.068 -12.803 -11.531 2.193 0.481 0.510 C03 V70 3 V70 C04 C4 C 0 1 Y N N N N N -13.088 -12.956 -15.235 -1.418 -2.505 0.692 C04 V70 4 V70 C05 C5 C 0 1 Y N N N N N -12.543 -15.222 -13.913 -0.066 -3.109 2.972 C05 V70 5 V70 C06 C6 C 0 1 Y N N N N N -12.918 -9.962 -17.405 -3.733 -2.799 -2.220 C06 V70 6 V70 C07 C7 C 0 1 Y N N N N N -15.279 -11.565 -11.630 2.206 -0.335 -0.556 C07 V70 7 V70 C08 C8 C 0 1 Y N N N N N -18.346 -11.567 -15.460 -1.658 2.438 -0.682 C08 V70 8 V70 C09 C9 C 0 1 Y N N N N N -15.148 -11.384 -9.176 4.726 -0.343 -0.598 C09 V70 9 V70 C10 C10 C 0 1 Y N N N N N -13.418 -11.755 -15.925 -2.135 -2.184 -0.512 C10 V70 10 V70 C11 C11 C 0 1 Y N N N N N -18.956 -13.273 -17.079 -3.293 2.908 1.097 C11 V70 11 V70 C12 C12 C 0 1 Y N N N N N -16.573 -14.547 -16.418 -2.557 0.551 2.255 C12 V70 12 V70 C13 C13 C 0 1 Y N N N N N -12.483 -11.143 -16.775 -3.037 -3.133 -1.049 C13 V70 13 V70 C14 C14 C 0 1 Y N N N N N -14.833 -10.861 -10.433 3.501 -0.771 -1.134 C14 V70 14 V70 C15 C15 C 0 1 Y N N N N N -14.160 -9.482 -17.191 -3.501 -1.573 -2.780 C15 V70 15 V70 C16 C16 C 0 1 Y N N N N N -15.924 -12.645 -9.083 4.712 0.558 0.556 C16 V70 16 V70 C17 C17 C 0 1 Y N N N N N -19.533 -10.857 -15.733 -2.022 3.658 -1.300 C17 V70 17 V70 C18 C18 C 0 1 Y N N N N N -17.105 -14.520 -10.145 3.446 1.827 2.187 C18 V70 18 V70 C19 C19 C 0 1 Y N N N N N -15.043 -10.156 -16.318 -2.595 -0.696 -2.193 C19 V70 19 V70 C20 C20 C 0 1 Y N N N N N -13.776 -14.611 -13.782 0.090 -1.897 2.309 C20 V70 20 V70 C21 C21 C 0 1 Y N N N N N -17.420 -15.104 -17.379 -3.526 1.339 2.866 C21 V70 21 V70 C22 C22 C 0 1 Y N N N N N -17.650 -9.984 -13.907 -0.113 1.994 -2.313 C22 V70 22 V70 C23 C23 C 0 1 Y N N N N N -11.811 -13.521 -15.416 -1.631 -3.762 1.307 C23 V70 23 V70 C24 C24 C 0 1 Y N N N N N -11.558 -14.702 -14.714 -0.923 -4.055 2.482 C24 V70 24 V70 C25 C25 C 0 1 Y N N N N N -18.591 -14.488 -17.705 -3.906 2.524 2.298 C25 V70 25 V70 C26 C26 C 0 1 Y N N N N N -14.101 -9.675 -10.488 3.498 -1.637 -2.238 C26 V70 26 V70 C27 C27 C 0 1 Y N N N N N -11.202 -11.740 -16.943 -3.214 -4.376 -0.402 C27 V70 27 V70 C28 C28 C 0 1 Y N N N N N -10.890 -12.872 -16.298 -2.538 -4.679 0.731 C28 V70 28 V70 C29 C29 C 0 1 Y N N N N N -20.422 -11.392 -16.714 -3.017 4.472 -0.714 C29 V70 29 V70 C30 C30 C 0 1 Y N N N N N -16.236 -13.209 -7.840 5.898 1.022 1.132 C30 V70 30 V70 C31 C31 C 0 1 Y N N N N N -20.158 -12.541 -17.355 -3.627 4.113 0.439 C31 V70 31 V70 C32 C32 C 0 1 Y N N N N N -13.701 -9.043 -9.330 4.682 -2.052 -2.773 C32 V70 32 V70 C33 C33 C 0 1 Y N N N N N -19.746 -9.660 -15.046 -1.371 4.021 -2.488 C33 V70 33 V70 C34 C34 C 0 1 Y N N N N N -18.807 -9.235 -14.129 -0.414 3.177 -2.980 C34 V70 34 V70 C35 C35 C 0 1 Y N N N N N -17.383 -15.045 -8.894 4.617 2.268 2.729 C35 V70 35 V70 C36 C36 C 0 1 Y N N N N N -14.730 -10.703 -8.022 5.925 -0.782 -1.165 C36 V70 36 V70 C37 C37 C 0 1 Y N N N N N -16.943 -14.387 -7.769 5.842 1.865 2.205 C37 V70 37 V70 C38 C38 C 0 1 Y N N N N N -14.008 -9.571 -8.118 5.894 -1.627 -2.239 C38 V70 38 V70 N01 N1 N 1 1 Y N N N N N -14.691 -11.289 -15.723 -1.939 -1.019 -1.091 N01 V70 39 V70 N02 N2 N -1 1 N N N N N N -15.059 -11.253 -12.855 0.979 -0.762 -1.083 N02 V70 40 V70 N03 N3 N 1 1 Y N N N N N -16.864 -13.404 -15.812 -1.982 0.922 1.123 N03 V70 41 V70 N04 N4 N -1 1 N N N N N N -16.437 -13.303 -12.671 0.953 0.847 1.054 N04 V70 42 V70 N05 N5 N 1 1 Y N N N N N -17.428 -11.141 -14.560 -0.736 1.653 -1.198 N05 V70 43 V70 N06 N6 N 1 1 Y N N N N N -14.070 -13.495 -14.430 -0.576 -1.632 1.197 N06 V70 44 V70 RU01 RU1 RU 0 0 N N N N N N -15.813 -12.416 -14.348 -0.554 0.011 -0.009 RU01 V70 45 V70 H01 H1 H 0 1 N N N N N N -12.350 -16.135 -13.369 0.494 -3.302 3.876 H01 V70 46 V70 H02 H2 H 0 1 N N N N N N -12.249 -9.434 -18.068 -4.428 -3.489 -2.666 H02 V70 47 V70 H03 H3 H 0 1 N N N N N N -15.658 -15.060 -16.162 -2.268 -0.386 2.714 H03 V70 48 V70 H04 H4 H 0 1 N N N N N N -14.481 -8.579 -17.689 -4.022 -1.283 -3.681 H04 V70 49 V70 H05 H5 H 0 1 N N N N N N -17.449 -15.017 -11.040 2.502 2.148 2.601 H05 V70 50 V70 H06 H6 H 0 1 N N N N N N -16.023 -9.742 -16.131 -2.424 0.271 -2.648 H06 V70 51 V70 H07 H7 H 0 1 N N N N N N -14.518 -15.055 -13.135 0.771 -1.157 2.709 H07 V70 52 V70 H08 H8 H 0 1 N N N N N N -17.145 -16.028 -17.866 -3.977 1.013 3.792 H08 V70 53 V70 H09 H9 H 0 1 N N N N N N -16.918 -9.628 -13.197 0.649 1.339 -2.717 H09 V70 54 V70 H10 H10 H 0 1 N N N N N N -10.602 -15.198 -14.800 -1.051 -4.999 2.983 H10 V70 55 V70 H11 H11 H 0 1 N N N N N N -19.243 -14.929 -18.444 -4.654 3.145 2.761 H11 V70 56 V70 H25 H12 H 0 1 N N N N N N -13.845 -9.248 -11.446 2.564 -1.975 -2.661 H25 V70 57 V70 H12 H13 H 0 1 N N N N N N -10.476 -11.277 -17.595 -3.902 -5.100 -0.818 H12 V70 58 V70 H13 H14 H 0 1 N N N N N N -9.913 -13.308 -16.448 -2.695 -5.640 1.202 H13 V70 59 V70 H14 H15 H 0 1 N N N N N N -21.331 -10.858 -16.946 -3.296 5.401 -1.194 H14 V70 60 V70 H15 H16 H 0 1 N N N N N N -15.920 -12.717 -6.932 6.852 0.715 0.732 H15 V70 61 V70 H16 H17 H 0 1 N N N N N N -20.858 -12.918 -18.086 -4.383 4.761 0.864 H16 V70 62 V70 H17 H18 H 0 1 N N N N N N -13.140 -8.122 -9.388 4.680 -2.723 -3.622 H17 V70 63 V70 H18 H19 H 0 1 N N N N N N -20.635 -9.074 -15.230 -1.618 4.936 -2.996 H18 V70 64 V70 H19 H20 H 0 1 N N N N N N -18.968 -8.319 -13.580 0.111 3.428 -3.891 H19 V70 65 V70 H20 H21 H 0 1 N N N N N N -17.941 -15.965 -8.802 4.595 2.939 3.578 H20 V70 66 V70 H21 H22 H 0 1 N N N N N N -14.990 -11.091 -7.048 6.870 -0.457 -0.757 H21 V70 67 V70 H22 H23 H 0 1 N N N N N N -17.160 -14.809 -6.799 6.758 2.224 2.653 H22 V70 68 V70 H23 H24 H 0 1 N N N N N N -13.669 -9.077 -7.220 6.821 -1.968 -2.678 H23 V70 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V70 C01 C08 DOUB Y N 1 V70 C01 C11 SING Y N 2 V70 C01 N03 SING Y N 3 V70 C02 C03 DOUB Y N 4 V70 C02 C16 SING Y N 5 V70 C02 C18 SING Y N 6 V70 C03 C07 SING Y N 7 V70 C03 N04 SING N N 8 V70 C04 C10 DOUB Y N 9 V70 C04 C23 SING Y N 10 V70 C04 N06 SING Y N 11 V70 C05 C20 SING Y N 12 V70 C05 C24 DOUB Y N 13 V70 C06 C13 SING Y N 14 V70 C06 C15 DOUB Y N 15 V70 C07 C14 DOUB Y N 16 V70 C07 N02 SING N N 17 V70 C08 C17 SING Y N 18 V70 C08 N05 SING Y N 19 V70 C09 C14 SING Y N 20 V70 C09 C16 DOUB Y N 21 V70 C09 C36 SING Y N 22 V70 C10 C13 SING Y N 23 V70 C10 N01 SING Y N 24 V70 C11 C25 SING Y N 25 V70 C11 C31 DOUB Y N 26 V70 C12 C21 SING Y N 27 V70 C12 N03 DOUB Y N 28 V70 C13 C27 DOUB Y N 29 V70 C14 C26 SING Y N 30 V70 C15 C19 SING Y N 31 V70 C16 C30 SING Y N 32 V70 C17 C29 DOUB Y N 33 V70 C17 C33 SING Y N 34 V70 C18 C35 DOUB Y N 35 V70 C19 N01 DOUB Y N 36 V70 C20 N06 DOUB Y N 37 V70 C21 C25 DOUB Y N 38 V70 C22 C34 SING Y N 39 V70 C22 N05 DOUB Y N 40 V70 C23 C24 SING Y N 41 V70 C23 C28 DOUB Y N 42 V70 C26 C32 DOUB Y N 43 V70 C27 C28 SING Y N 44 V70 C29 C31 SING Y N 45 V70 C30 C37 DOUB Y N 46 V70 C32 C38 SING Y N 47 V70 C33 C34 DOUB Y N 48 V70 C35 C37 SING Y N 49 V70 C36 C38 DOUB Y N 50 V70 N01 RU01 SING N N 51 V70 N02 RU01 SING N N 52 V70 N03 RU01 SING N N 53 V70 N04 RU01 SING N N 54 V70 N05 RU01 SING N N 55 V70 N06 RU01 SING N N 56 V70 C05 H01 SING N N 57 V70 C06 H02 SING N N 58 V70 C12 H03 SING N N 59 V70 C15 H04 SING N N 60 V70 C18 H05 SING N N 61 V70 C19 H06 SING N N 62 V70 C20 H07 SING N N 63 V70 C21 H08 SING N N 64 V70 C22 H09 SING N N 65 V70 C24 H10 SING N N 66 V70 C25 H11 SING N N 67 V70 C26 H25 SING N N 68 V70 C27 H12 SING N N 69 V70 C28 H13 SING N N 70 V70 C29 H14 SING N N 71 V70 C30 H15 SING N N 72 V70 C31 H16 SING N N 73 V70 C32 H17 SING N N 74 V70 C33 H18 SING N N 75 V70 C34 H19 SING N N 76 V70 C35 H20 SING N N 77 V70 C36 H21 SING N N 78 V70 C37 H22 SING N N 79 V70 C38 H23 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V70 InChI InChI 1.06 "InChI=1S/C14H8N2.2C12H8N2.Ru/c15-13-11-7-3-1-5-9(11)10-6-2-4-8-12(10)14(13)16;2*1-3-9-5-6-10-4-2-8-14-12(10)11(9)13-7-1;/h1-8H;2*1-8H;/q-2;;;+4" V70 InChIKey InChI 1.06 SKXAWXSJDKGLCH-UHFFFAOYSA-N V70 SMILES_CANONICAL CACTVS 3.385 "[N-]1c2c([N-][Ru]134([n+]5cccc6ccc7ccc[n+]3c7c56)[n+]8cccc9ccc%10ccc[n+]4c%10c89)c%11ccccc%11c%12ccccc2%12" V70 SMILES CACTVS 3.385 "[N-]1c2c([N-][Ru]134([n+]5cccc6ccc7ccc[n+]3c7c56)[n+]8cccc9ccc%10ccc[n+]4c%10c89)c%11ccccc%11c%12ccccc2%12" V70 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c3ccccc3c4c2[N-][Ru]56([N-]4)([n+]7cccc8c7c9[n+]5cccc9cc8)[n+]1cccc2c1c1[n+]6cccc1cc2" V70 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c3ccccc3c4c2[N-][Ru]56([N-]4)([n+]7cccc8c7c9[n+]5cccc9cc8)[n+]1cccc2c1c1[n+]6cccc1cc2" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V70 "Create component" 2023-02-23 PDBE V70 "Modify name" 2023-11-13 PDBE V70 "Initial release" 2024-03-06 RCSB #