data_V71 # _chem_comp.id V71 _chem_comp.name "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-galactopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H25 F N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-galactoside; (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-D-galactoside; (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-galactoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-06-17 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.349 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V71 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5BWS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 V71 "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-galactoside" PDB ? 2 V71 "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-D-galactoside" PDB ? 3 V71 "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-galactoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V71 C1 C1 C 0 1 N N S -6.588 -0.871 -0.593 -0.953 0.779 -0.628 C1 V71 1 V71 C10 C10 C 0 1 N N R -4.677 0.078 0.763 1.186 -0.013 0.110 C10 V71 2 V71 C11 C11 C 0 1 N N R -5.151 1.498 1.307 2.176 1.113 -0.192 C11 V71 3 V71 C12 C12 C 0 1 N N S -3.851 2.394 1.536 3.527 0.513 -0.585 C12 V71 4 V71 C2 C2 C 0 1 N N R -8.046 -1.354 -0.231 -2.127 1.650 -0.175 C2 V71 5 V71 C3 C3 C 0 1 N N R -7.941 -2.761 0.390 -2.922 0.901 0.900 C3 V71 6 V71 C4 C4 C 0 1 N N R -7.334 -3.759 -0.612 -3.382 -0.446 0.335 C4 V71 7 V71 C5 C5 C 0 1 N N R -5.887 -3.322 -1.045 -2.159 -1.236 -0.139 C5 V71 8 V71 C6 C6 C 0 1 N N N -5.291 -4.298 -2.100 -2.614 -2.558 -0.760 C6 V71 9 V71 C7 C7 C 0 1 N N R -2.922 1.701 2.658 4.061 -0.339 0.568 C7 V71 10 V71 C8 C8 C 0 1 N N N -2.465 0.271 2.075 3.071 -1.466 0.870 C8 V71 11 V71 C9 C9 C 0 1 N N S -3.752 -0.635 1.800 1.719 -0.866 1.263 C9 V71 12 V71 F99 F99 F 0 1 N N N -8.182 -3.851 -1.806 -4.246 -0.230 -0.744 F99 V71 13 V71 N2 N2 N 0 1 N N N -8.638 -0.352 0.738 -1.618 2.911 0.380 N2 V71 14 V71 N6 N6 N 0 1 N N N -3.996 -3.961 -2.556 -1.438 -3.367 -1.105 N6 V71 15 V71 N7 N7 N 0 1 N N N -1.673 2.502 2.897 5.359 -0.916 0.191 N7 V71 16 V71 N9 N9 N 0 1 N N N -3.326 -1.944 1.264 0.769 -1.947 1.553 N9 V71 17 V71 O1 O1 O 0 1 N N N -5.800 -0.764 0.551 -0.076 0.547 0.477 O1 V71 18 V71 O11 O11 O 0 1 N N N -6.009 2.120 0.271 1.677 1.909 -1.269 O11 V71 19 V71 O12 O12 O 0 1 N N N -4.293 3.634 2.003 4.452 1.565 -0.867 O12 V71 20 V71 O3 O23 O 0 1 N N N -9.005 -3.112 0.651 -4.062 1.676 1.277 O3 V71 21 V71 O5 O5 O 0 1 N N N -6.000 -1.881 -1.575 -1.448 -0.471 -1.114 O5 V71 22 V71 H1 H1 H 0 1 N N N -6.668 0.103 -1.097 -0.408 1.288 -1.423 H1 V71 23 V71 H2A H2 H 0 1 N N N -4.117 0.230 -0.171 1.063 -0.637 -0.776 H2A V71 24 V71 H3A H3 H 0 1 N N N -5.692 1.374 2.257 2.299 1.736 0.693 H3A V71 25 V71 H4A H4 H 0 1 N N N -3.288 2.474 0.595 3.404 -0.110 -1.471 H4A V71 26 V71 H2 H5 H 0 1 N N N -8.652 -1.397 -1.148 -2.775 1.860 -1.026 H2 V71 27 V71 H3 H6 H 0 1 N N N -7.263 -2.697 1.254 -2.290 0.736 1.772 H3 V71 28 V71 H4 H7 H 0 1 N N N -7.267 -4.745 -0.130 -3.901 -1.008 1.110 H4 V71 29 V71 H5 H8 H 0 1 N N N -5.240 -3.325 -0.155 -1.506 -1.439 0.710 H5 V71 30 V71 H61 H9 H 0 1 N N N -5.966 -4.316 -2.969 -3.232 -3.101 -0.045 H61 V71 31 V71 H62 H10 H 0 1 N N N -5.245 -5.301 -1.651 -3.193 -2.355 -1.661 H62 V71 32 V71 H11 H11 H 0 1 N N N -3.495 1.562 3.586 4.184 0.284 1.454 H11 V71 33 V71 H12 H12 H 0 1 N N N -1.814 -0.231 2.806 2.948 -2.089 -0.016 H12 V71 34 V71 H13 H13 H 0 1 N N N -1.914 0.419 1.134 3.451 -2.073 1.692 H13 V71 35 V71 H14 H14 H 0 1 N N N -4.300 -0.768 2.744 1.842 -0.243 2.149 H14 V71 36 V71 H15 H15 H 0 1 N N N -9.565 -0.634 0.985 -2.375 3.503 0.687 H15 V71 37 V71 H16 H16 H 0 1 N N N -8.072 -0.310 1.561 -0.967 2.738 1.132 H16 V71 38 V71 H18 H18 H 0 1 N N N -3.692 -4.637 -3.227 -1.712 -4.247 -1.517 H18 V71 39 V71 H19 H19 H 0 1 N N N -4.017 -3.056 -2.981 -0.816 -2.860 -1.716 H19 V71 40 V71 H21 H21 H 0 1 N N N -1.116 2.052 3.595 5.732 -1.484 0.937 H21 V71 41 V71 H22 H22 H 0 1 N N N -1.152 2.568 2.046 5.284 -1.446 -0.665 H22 V71 42 V71 H24 H24 H 0 1 N N N -2.734 -2.400 1.928 1.146 -2.587 2.236 H24 V71 43 V71 H25 H25 H 0 1 N N N -4.131 -2.511 1.091 -0.119 -1.577 1.856 H25 V71 44 V71 H27 H27 H 0 1 N N N -6.305 2.971 0.573 2.255 2.644 -1.515 H27 V71 45 V71 H28 H28 H 0 1 N N N -3.546 4.201 2.153 4.177 2.147 -1.590 H28 V71 46 V71 HO3 H29 H 0 1 N Y N -9.396 -2.506 1.270 -4.613 1.261 1.956 HO3 V71 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V71 N6 C6 SING N N 1 V71 C6 C5 SING N N 2 V71 F99 C4 SING N N 3 V71 O5 C5 SING N N 4 V71 O5 C1 SING N N 5 V71 C5 C4 SING N N 6 V71 C4 C3 SING N N 7 V71 C1 C2 SING N N 8 V71 C1 O1 SING N N 9 V71 C2 C3 SING N N 10 V71 C2 N2 SING N N 11 V71 O11 C11 SING N N 12 V71 C3 O3 SING N N 13 V71 O1 C10 SING N N 14 V71 C10 C11 SING N N 15 V71 C10 C9 SING N N 16 V71 N9 C9 SING N N 17 V71 C11 C12 SING N N 18 V71 C12 O12 SING N N 19 V71 C12 C7 SING N N 20 V71 C9 C8 SING N N 21 V71 C8 C7 SING N N 22 V71 C7 N7 SING N N 23 V71 C1 H1 SING N N 24 V71 C10 H2A SING N N 25 V71 C11 H3A SING N N 26 V71 C12 H4A SING N N 27 V71 C2 H2 SING N N 28 V71 C3 H3 SING N N 29 V71 C4 H4 SING N N 30 V71 C5 H5 SING N N 31 V71 C6 H61 SING N N 32 V71 C6 H62 SING N N 33 V71 C7 H11 SING N N 34 V71 C8 H12 SING N N 35 V71 C8 H13 SING N N 36 V71 C9 H14 SING N N 37 V71 N2 H15 SING N N 38 V71 N2 H16 SING N N 39 V71 N6 H18 SING N N 40 V71 N6 H19 SING N N 41 V71 N7 H21 SING N N 42 V71 N7 H22 SING N N 43 V71 N9 H24 SING N N 44 V71 N9 H25 SING N N 45 V71 O11 H27 SING N N 46 V71 O12 H28 SING N N 47 V71 O3 HO3 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V71 SMILES ACDLabs 12.01 "C1(C(C(O)C(C(CN)O1)F)N)OC2C(C(O)C(N)CC2N)O" V71 InChI InChI 1.03 "InChI=1S/C12H25FN4O5/c13-6-5(2-14)21-12(7(17)9(6)19)22-11-4(16)1-3(15)8(18)10(11)20/h3-12,18-20H,1-2,14-17H2/t3-,4+,5-,6+,7-,8+,9+,10-,11-,12-/m1/s1" V71 InChIKey InChI 1.03 CRXNRBKQEXVRGM-RMDUJVAESA-N V71 SMILES_CANONICAL CACTVS 3.385 "NC[C@H]1O[C@H](O[C@@H]2[C@@H](N)C[C@@H](N)[C@H](O)[C@H]2O)[C@H](N)[C@@H](O)[C@H]1F" V71 SMILES CACTVS 3.385 "NC[CH]1O[CH](O[CH]2[CH](N)C[CH](N)[CH](O)[CH]2O)[CH](N)[CH](O)[CH]1F" V71 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C1[C@H]([C@@H]([C@H]([C@@H]([C@H]1N)O[C@@H]2[C@@H]([C@H]([C@H]([C@H](O2)CN)F)O)N)O)O)N" V71 SMILES "OpenEye OEToolkits" 1.9.2 "C1C(C(C(C(C1N)OC2C(C(C(C(O2)CN)F)O)N)O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V71 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,4,6-trideoxy-4-fluoro-alpha-D-galactopyranoside" V71 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 ;(1S,2R,3R,4S,6R)-3-[(2S,3R,4R,5R,6R)-6-(aminomethyl)-3-azanyl-5-fluoranyl-4-oxidanyl-oxan-2-yl]oxy-4,6-bis(azanyl)cyclo hexane-1,2-diol ; # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support V71 "CARBOHYDRATE ISOMER" D PDB ? V71 "CARBOHYDRATE RING" pyranose PDB ? V71 "CARBOHYDRATE ANOMER" alpha PDB ? V71 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V71 "Create component" 2015-06-17 PDBJ V71 "Initial release" 2016-06-22 RCSB V71 "Other modification" 2020-07-03 RCSB V71 "Modify synonyms" 2020-07-17 RCSB V71 "Modify internal type" 2020-07-17 RCSB V71 "Modify linking type" 2020-07-17 RCSB V71 "Modify atom id" 2020-07-17 RCSB V71 "Modify component atom id" 2020-07-17 RCSB V71 "Modify leaving atom flag" 2020-07-17 RCSB ##