data_V78 # _chem_comp.id V78 _chem_comp.name ;methyl N-[(2S)-1-[2-[[4-[(3S)-3,4-dihydrothiophen-3-yl]phenyl]methyl]-2-[3-[(3Z,8S,11R)-11-oxidanyl-7,10-bis(oxidanylidene)-8-propan-2-yl-6,9-diazabicyclo[11.2.2]heptadeca-1(16),3,13(17),14-tetraen-11-yl]propyl]hydrazinyl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H55 N5 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-02-08 _chem_comp.pdbx_modified_date 2014-12-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 733.960 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V78 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CPU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V78 CAR CAR C 0 1 Y N N 7.954 23.493 2.666 -5.600 -3.001 -0.755 CAR V78 1 V78 CAT CAT C 0 1 Y N N 9.220 23.044 3.030 -4.261 -2.664 -0.694 CAT V78 2 V78 CBS CBS C 0 1 Y N N 10.329 23.868 2.868 -3.704 -1.866 -1.676 CBS V78 3 V78 CBF CBF C 0 1 N N N 11.562 23.497 3.398 -2.246 -1.489 -1.603 CBF V78 4 V78 CAU CAU C 0 1 Y N N 10.162 25.150 2.360 -4.484 -1.411 -2.723 CAU V78 5 V78 CAS CAS C 0 1 Y N N 8.898 25.589 1.978 -5.824 -1.748 -2.783 CAS V78 6 V78 CBQ CBQ C 0 1 Y N N 7.780 24.793 2.201 -6.382 -2.540 -1.798 CBQ V78 7 V78 CBB CBB C 0 1 N N N 6.543 25.213 1.713 -7.845 -2.898 -1.856 CBB V78 8 V78 CAM CAM C 0 1 N N N 5.503 24.862 2.574 -8.370 -3.077 -0.454 CAM V78 9 V78 CAL CAL C 0 1 N N N 5.298 25.477 3.811 -8.394 -2.060 0.372 CAL V78 10 V78 CAZ CAZ C 0 1 N N N 6.167 26.439 4.322 -7.902 -0.709 -0.079 CAZ V78 11 V78 NBH NBH N 0 1 N N N 7.093 25.804 5.293 -6.923 -0.203 0.906 NBH V78 12 V78 C C C 0 1 N N N 8.251 26.481 5.693 -5.977 0.652 0.421 C V78 13 V78 O O O 0 1 N N N 8.460 27.608 5.245 -5.972 0.961 -0.752 O V78 14 V78 CA CA C 0 1 N N S 9.234 25.805 6.423 -4.940 1.207 1.362 CA V78 15 V78 CB CB C 0 1 N N N 9.618 26.635 7.653 -5.239 2.680 1.649 CB V78 16 V78 CG1 CG1 C 0 1 N N N 8.354 27.074 8.399 -6.666 2.817 2.182 CG1 V78 17 V78 CG2 CG2 C 0 1 N N N 10.500 25.794 8.578 -4.252 3.207 2.693 CG2 V78 18 V78 N N N 0 1 N N N 10.419 25.588 5.552 -3.609 1.083 0.714 N V78 19 V78 CBP CBP C 0 1 N N N 11.046 24.340 5.469 -3.383 -0.135 0.128 CBP V78 20 V78 OAJ OAJ O 0 1 N N N 10.551 23.384 6.067 -4.223 -1.009 0.175 OAJ V78 21 V78 CCA CCA C 0 1 N N R 12.063 24.160 4.521 -2.072 -0.366 -0.577 CCA V78 22 V78 OAK OAK O 0 1 N N N 12.565 25.439 4.132 -1.670 0.833 -1.244 OAK V78 23 V78 CBD CBD C 0 1 N N N 13.217 23.346 5.107 -1.005 -0.767 0.444 CBD V78 24 V78 CBA CBA C 0 1 N N N 13.728 24.003 6.391 -0.846 0.348 1.480 CBA V78 25 V78 CBC CBC C 0 1 N N N 15.237 23.783 6.490 0.133 -0.101 2.566 CBC V78 26 V78 NBY NBY N 0 1 N N N 15.523 22.439 7.010 1.474 -0.247 1.985 NBY V78 27 V78 NBK NBK N 0 1 N N N 16.093 21.624 6.311 1.972 0.962 1.591 NBK V78 28 V78 CBO CBO C 0 1 N N N 15.364 20.668 5.692 2.227 1.194 0.288 CBO V78 29 V78 OAI OAI O 0 1 N N N 14.289 20.250 6.119 1.936 0.361 -0.544 OAI V78 30 V78 CBX CBX C 0 1 N N S 16.233 19.775 4.788 2.874 2.487 -0.135 CBX V78 31 V78 CBZ CBZ C 0 1 N N N 15.458 19.086 3.653 1.863 3.629 -0.008 CBZ V78 32 V78 CAD CAD C 0 1 N N N 14.542 17.993 4.208 1.459 3.790 1.459 CAD V78 33 V78 CAE CAE C 0 1 N N N 14.626 20.111 2.876 2.496 4.929 -0.508 CAE V78 34 V78 CAF CAF C 0 1 N N N 16.475 18.440 2.706 0.625 3.309 -0.846 CAF V78 35 V78 NBI NBI N 0 1 N N N 16.876 18.751 5.615 3.317 2.379 -1.527 NBI V78 36 V78 CBM CBM C 0 1 N N N 18.204 18.733 5.753 4.327 3.151 -1.975 CBM V78 37 V78 OAG OAG O 0 1 N N N 18.897 19.504 5.086 4.870 3.937 -1.224 OAG V78 38 V78 OBL OBL O 0 1 N N N 18.780 17.874 6.638 4.733 3.052 -3.255 OBL V78 39 V78 CAA CAA C 0 1 N N N 20.170 18.172 6.782 5.826 3.914 -3.668 CAA V78 40 V78 CBE CBE C 0 1 N N N 15.655 22.278 8.334 2.386 -0.910 2.927 CBE V78 41 V78 CXQ CXQ C 0 1 Y N N 15.957 21.000 8.788 3.713 -1.153 2.255 CXQ V78 42 V78 CXV CXV C 0 1 Y N N 17.279 20.569 8.857 4.708 -0.197 2.324 CXV V78 43 V78 CXW CXW C 0 1 Y N N 17.580 19.338 9.434 5.925 -0.420 1.708 CXW V78 44 V78 CXP CXP C 0 1 Y N N 14.966 20.282 9.442 3.937 -2.336 1.574 CXP V78 45 V78 CXR CXR C 0 1 Y N N 15.263 19.054 10.014 5.154 -2.559 0.958 CXR V78 46 V78 CXA CXA C 0 1 Y N N 16.567 18.580 10.014 6.147 -1.600 1.023 CXA V78 47 V78 CXY CXY C 0 1 N N S 16.818 17.385 10.544 7.474 -1.843 0.350 CXY V78 48 V78 CXZ CXZ C 0 1 N N N 15.827 16.474 10.645 7.256 -2.041 -1.141 CXZ V78 49 V78 CXT CXT C 0 1 N N N 16.174 15.384 11.341 7.748 -3.391 -1.542 CXT V78 50 V78 SAI SAI S 0 1 N N N 17.642 15.691 12.035 8.383 -4.263 -0.235 SAI V78 51 V78 CXG CXG C 0 1 N N N 17.836 17.205 11.392 8.108 -3.062 0.929 CXG V78 52 V78 HAR HAR H 0 1 N N N 7.104 22.831 2.745 -6.034 -3.629 0.009 HAR V78 53 V78 HAT HAT H 0 1 N N N 9.342 22.052 3.440 -3.650 -3.022 0.121 HAT V78 54 V78 HBF1 HBF1 H 0 0 N N N 11.487 22.432 3.664 -1.660 -2.356 -1.298 HBF1 V78 55 V78 HBF2 HBF2 H 0 0 N N N 12.304 23.623 2.596 -1.909 -1.145 -2.581 HBF2 V78 56 V78 HAU HAU H 0 1 N N N 11.014 25.807 2.261 -4.048 -0.793 -3.493 HAU V78 57 V78 HAS HAS H 0 1 N N N 8.785 26.554 1.506 -6.434 -1.392 -3.600 HAS V78 58 V78 HBB1 HBB1 H 0 0 N N N 6.558 26.307 1.599 -8.396 -2.099 -2.351 HBB1 V78 59 V78 HBB2 HBB2 H 0 0 N N N 6.368 24.744 0.733 -7.971 -3.827 -2.412 HBB2 V78 60 V78 HAM HAM H 0 1 N N N 4.825 24.078 2.270 -8.726 -4.044 -0.131 HAM V78 61 V78 HAL HAL H 0 1 N N N 4.433 25.196 4.394 -8.766 -2.191 1.377 HAL V78 62 V78 HAZ1 HAZ1 H 0 0 N N N 6.747 26.883 3.499 -7.424 -0.802 -1.054 HAZ1 V78 63 V78 HAZ2 HAZ2 H 0 0 N N N 5.587 27.225 4.828 -8.742 -0.019 -0.147 HAZ2 V78 64 V78 HBH HBH H 0 1 N N N 6.890 24.896 5.660 -6.951 -0.463 1.841 HBH V78 65 V78 HA HA H 0 1 N N N 8.855 24.830 6.764 -4.949 0.642 2.294 HA V78 66 V78 HB HB H 0 1 N N N 10.176 27.526 7.330 -5.137 3.257 0.729 HB V78 67 V78 H H H 0 1 N N N 10.776 26.351 5.013 -2.957 1.802 0.705 H V78 68 V78 HG11 HG11 H 0 0 N N N 8.636 27.669 9.280 -6.768 2.240 3.101 HG11 V78 69 V78 HG12 HG12 H 0 0 N N N 7.727 27.683 7.731 -6.879 3.866 2.386 HG12 V78 70 V78 HG13 HG13 H 0 0 N N N 7.791 26.185 8.721 -7.369 2.441 1.438 HG13 V78 71 V78 HG21 HG21 H 0 0 N N N 10.777 26.388 9.462 -3.243 3.193 2.280 HG21 V78 72 V78 HG22 HG22 H 0 0 N N N 9.947 24.898 8.897 -4.520 4.229 2.963 HG22 V78 73 V78 HG23 HG23 H 0 0 N N N 11.410 25.491 8.040 -4.290 2.575 3.580 HG23 V78 74 V78 HAK HAK H 0 1 N N N 12.906 25.891 4.895 -2.302 1.146 -1.905 HAK V78 75 V78 HBD1 HBD1 H 0 0 N N N 12.866 22.329 5.334 -1.309 -1.686 0.944 HBD1 V78 76 V78 HBD2 HBD2 H 0 0 N N N 14.035 23.296 4.374 -0.056 -0.927 -0.066 HBD2 V78 77 V78 HBA1 HBA1 H 0 0 N N N 13.513 25.081 6.366 -0.463 1.245 0.993 HBA1 V78 78 V78 HBA2 HBA2 H 0 0 N N N 13.230 23.550 7.261 -1.815 0.566 1.931 HBA2 V78 79 V78 HBC1 HBC1 H 0 0 N N N 15.685 23.889 5.491 0.161 0.645 3.361 HBC1 V78 80 V78 HBC2 HBC2 H 0 0 N N N 15.670 24.534 7.168 -0.192 -1.057 2.976 HBC2 V78 81 V78 HBK HBK H 0 1 N N N 17.086 21.660 6.196 2.142 1.654 2.249 HBK V78 82 V78 HBE1 HBE1 H 0 0 N N N 16.459 22.948 8.671 2.532 -0.274 3.800 HBE1 V78 83 V78 HBE2 HBE2 H 0 0 N N N 14.706 22.580 8.801 1.957 -1.862 3.239 HBE2 V78 84 V78 HBX HBX H 0 1 N N N 17.011 20.407 4.334 3.734 2.690 0.505 HBX V78 85 V78 HBI HBI H 0 1 N N N 16.318 18.062 6.078 2.883 1.753 -2.127 HBI V78 86 V78 HAD1 HAD1 H 0 0 N N N 13.998 17.514 3.380 2.347 3.976 2.063 HAD1 V78 87 V78 HAD2 HAD2 H 0 0 N N N 15.147 17.239 4.733 0.771 4.630 1.556 HAD2 V78 88 V78 HAD3 HAD3 H 0 0 N N N 13.822 18.439 4.910 0.969 2.879 1.803 HAD3 V78 89 V78 HAE1 HAE1 H 0 0 N N N 14.078 19.603 2.069 2.785 4.813 -1.553 HAE1 V78 90 V78 HAE2 HAE2 H 0 0 N N N 13.910 20.594 3.557 1.776 5.742 -0.417 HAE2 V78 91 V78 HAE3 HAE3 H 0 0 N N N 15.292 20.872 2.444 3.379 5.157 0.090 HAE3 V78 92 V78 HAF1 HAF1 H 0 0 N N N 15.944 17.939 1.883 0.227 2.337 -0.551 HAF1 V78 93 V78 HAF2 HAF2 H 0 0 N N N 17.138 19.216 2.296 -0.132 4.076 -0.684 HAF2 V78 94 V78 HAF3 HAF3 H 0 0 N N N 17.073 17.701 3.259 0.897 3.284 -1.902 HAF3 V78 95 V78 HAA1 HAA1 H 0 0 N N N 20.623 17.472 7.499 5.538 4.957 -3.532 HAA1 V78 96 V78 HAA2 HAA2 H 0 0 N N N 20.669 18.073 5.807 6.707 3.699 -3.063 HAA2 V78 97 V78 HAA3 HAA3 H 0 0 N N N 20.288 19.202 7.151 6.054 3.734 -4.718 HAA3 V78 98 V78 HXV HXV H 0 1 N N N 18.071 21.189 8.463 4.535 0.725 2.860 HXV V78 99 V78 HXP HXP H 0 1 N N N 13.964 20.679 9.506 3.160 -3.085 1.525 HXP V78 100 V78 HXW HXW H 0 1 N N N 18.596 18.973 9.431 6.703 0.328 1.761 HXW V78 101 V78 HXR HXR H 0 1 N N N 14.476 18.464 10.461 5.328 -3.483 0.426 HXR V78 102 V78 HXY HXY H 0 1 N N N 17.306 16.949 9.660 8.125 -0.984 0.511 HXY V78 103 V78 HXZ1 HXZ1 H 0 0 N N N 14.968 16.947 11.144 6.193 -1.961 -1.367 HXZ1 V78 104 V78 HXZ2 HXZ2 H 0 0 N N N 15.536 16.162 9.631 7.803 -1.277 -1.693 HXZ2 V78 105 V78 HXG HXG H 0 1 N N N 18.627 17.907 11.613 8.364 -3.167 1.973 HXG V78 106 V78 HXT HXT H 0 1 N N N 15.601 14.473 11.432 7.705 -3.770 -2.553 HXT V78 107 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V78 CAR CAT SING Y N 1 V78 CAR CBQ DOUB Y N 2 V78 CAT CBS DOUB Y N 3 V78 CBS CBF SING N N 4 V78 CBS CAU SING Y N 5 V78 CBF CCA SING N N 6 V78 CAU CAS DOUB Y N 7 V78 CAS CBQ SING Y N 8 V78 CBQ CBB SING N N 9 V78 CBB CAM SING N N 10 V78 CAM CAL DOUB N Z 11 V78 CAL CAZ SING N N 12 V78 CAZ NBH SING N N 13 V78 NBH C SING N N 14 V78 C O DOUB N N 15 V78 C CA SING N N 16 V78 CA CB SING N N 17 V78 CA N SING N N 18 V78 CB CG1 SING N N 19 V78 CB CG2 SING N N 20 V78 N CBP SING N N 21 V78 CBP OAJ DOUB N N 22 V78 CBP CCA SING N N 23 V78 CCA OAK SING N N 24 V78 CCA CBD SING N N 25 V78 CBD CBA SING N N 26 V78 CBA CBC SING N N 27 V78 CBC NBY SING N N 28 V78 NBY NBK SING N N 29 V78 NBY CBE SING N N 30 V78 NBK CBO SING N N 31 V78 CBO OAI DOUB N N 32 V78 CBO CBX SING N N 33 V78 CBX CBZ SING N N 34 V78 CBX NBI SING N N 35 V78 CBZ CAD SING N N 36 V78 CBZ CAE SING N N 37 V78 CBZ CAF SING N N 38 V78 NBI CBM SING N N 39 V78 CBM OAG DOUB N N 40 V78 CBM OBL SING N N 41 V78 OBL CAA SING N N 42 V78 CBE CXQ SING N N 43 V78 CXQ CXV SING Y N 44 V78 CXQ CXP DOUB Y N 45 V78 CXV CXW DOUB Y N 46 V78 CXW CXA SING Y N 47 V78 CXP CXR SING Y N 48 V78 CXR CXA DOUB Y N 49 V78 CXA CXY SING N N 50 V78 CXY CXZ SING N N 51 V78 CXY CXG SING N N 52 V78 CXZ CXT SING N N 53 V78 CXT SAI DOUB N N 54 V78 SAI CXG DOUB N N 55 V78 CAR HAR SING N N 56 V78 CAT HAT SING N N 57 V78 CBF HBF1 SING N N 58 V78 CBF HBF2 SING N N 59 V78 CAU HAU SING N N 60 V78 CAS HAS SING N N 61 V78 CBB HBB1 SING N N 62 V78 CBB HBB2 SING N N 63 V78 CAM HAM SING N N 64 V78 CAL HAL SING N N 65 V78 CAZ HAZ1 SING N N 66 V78 CAZ HAZ2 SING N N 67 V78 NBH HBH SING N N 68 V78 CA HA SING N N 69 V78 CB HB SING N N 70 V78 N H SING N N 71 V78 CG1 HG11 SING N N 72 V78 CG1 HG12 SING N N 73 V78 CG1 HG13 SING N N 74 V78 CG2 HG21 SING N N 75 V78 CG2 HG22 SING N N 76 V78 CG2 HG23 SING N N 77 V78 OAK HAK SING N N 78 V78 CBD HBD1 SING N N 79 V78 CBD HBD2 SING N N 80 V78 CBA HBA1 SING N N 81 V78 CBA HBA2 SING N N 82 V78 CBC HBC1 SING N N 83 V78 CBC HBC2 SING N N 84 V78 NBK HBK SING N N 85 V78 CBE HBE1 SING N N 86 V78 CBE HBE2 SING N N 87 V78 CBX HBX SING N N 88 V78 NBI HBI SING N N 89 V78 CAD HAD1 SING N N 90 V78 CAD HAD2 SING N N 91 V78 CAD HAD3 SING N N 92 V78 CAE HAE1 SING N N 93 V78 CAE HAE2 SING N N 94 V78 CAE HAE3 SING N N 95 V78 CAF HAF1 SING N N 96 V78 CAF HAF2 SING N N 97 V78 CAF HAF3 SING N N 98 V78 CAA HAA1 SING N N 99 V78 CAA HAA2 SING N N 100 V78 CAA HAA3 SING N N 101 V78 CXV HXV SING N N 102 V78 CXP HXP SING N N 103 V78 CXW HXW SING N N 104 V78 CXR HXR SING N N 105 V78 CXY HXY SING N N 106 V78 CXZ HXZ1 SING N N 107 V78 CXZ HXZ2 SING N N 108 V78 CXG HXG SING N N 109 V78 CXT HXT SING N N 110 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V78 InChI InChI 1.03 ;InChI=1S/C40H55N5O6S/c1-27(2)33-35(46)41-21-8-7-10-28-11-13-29(14-12-28)24-40(50,37(48)42-33)20-9-22-45(44-36(47)34(39(3,4)5)43-38(49)51-6)25-30-15-17-31(18-16-30)32-19-23-52-26-32/h7-8,11-18,23,26-27,32-34,50H,9-10,19-22,24-25H2,1-6H3,(H,41,46)(H,42,48)(H,43,49)(H,44,47)/b8-7-/t32-,33+,34-,40-/m1/s1 ; V78 InChIKey InChI 1.03 CCIGJYBWBZXKTK-ZFOWIRSQSA-N V78 SMILES_CANONICAL CACTVS 3.385 "COC(=O)N[C@H](C(=O)NN(CCC[C@@]1(O)Cc2ccc(C\C=C/CNC(=O)[C@@H](NC1=O)C(C)C)cc2)Cc3ccc(cc3)[C@@H]4C[CH]=[S]=[CH]4)C(C)(C)C" V78 SMILES CACTVS 3.385 "COC(=O)N[CH](C(=O)NN(CCC[C]1(O)Cc2ccc(CC=CCNC(=O)[CH](NC1=O)C(C)C)cc2)Cc3ccc(cc3)[CH]4C[CH]=[S]=[CH]4)C(C)(C)C" V78 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)[C@H]1C(=O)NC/C=C\Cc2ccc(cc2)C[C@@](C(=O)N1)(CCCN(Cc3ccc(cc3)[C@@H]4CC=S=C4)NC(=O)[C@H](C(C)(C)C)NC(=O)OC)O" V78 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)C1C(=O)NCC=CCc2ccc(cc2)CC(C(=O)N1)(CCCN(Cc3ccc(cc3)C4CC=S=C4)NC(=O)C(C(C)(C)C)NC(=O)OC)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V78 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 ;methyl N-[(2S)-1-[2-[[4-[(3S)-3,4-dihydrothiophen-3-yl]phenyl]methyl]-2-[3-[(3Z,8S,11R)-11-oxidanyl-7,10-bis(oxidanylidene)-8-propan-2-yl-6,9-diazabicyclo[11.2.2]heptadeca-1(16),3,13(17),14-tetraen-11-yl]propyl]hydrazinyl]-3,3-dimethyl-1-oxidanylidene-butan-2-yl]carbamate ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V78 "Create component" 2014-02-08 EBI V78 "Initial release" 2014-12-17 RCSB #