data_V7A # _chem_comp.id V7A _chem_comp.name Sarecycline _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H29 N3 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-10 _chem_comp.pdbx_modified_date 2020-07-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 487.502 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V7A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XQE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V7A CAA C1 C 0 1 Y N N 120.681 27.287 23.983 -4.285 -0.350 0.631 CAA V7A 1 V7A CAB C2 C 0 1 Y N N 120.807 27.415 25.366 -5.438 0.403 0.489 CAB V7A 2 V7A CAC C3 C 0 1 Y N N 121.499 28.492 25.905 -5.371 1.713 0.055 CAC V7A 3 V7A CAD C4 C 0 1 Y N N 122.049 29.444 25.056 -4.141 2.285 -0.235 CAD V7A 4 V7A CAE C5 C 0 1 Y N N 121.930 29.333 23.677 -2.973 1.529 -0.085 CAE V7A 5 V7A CAF C6 C 0 1 Y N N 121.250 28.248 23.137 -3.055 0.201 0.340 CAF V7A 6 V7A CAG C7 C 0 1 N N N 121.098 28.144 21.754 -1.807 -0.632 0.460 CAG V7A 7 V7A CAH C8 C 0 1 N N N 122.500 30.290 22.844 -1.654 2.116 -0.392 CAH V7A 8 V7A CAI C9 C 0 1 N N N 122.653 30.008 21.489 -0.478 1.426 0.026 CAI V7A 9 V7A CAJ C10 C 0 1 N N R 122.271 28.759 20.990 -0.637 0.231 0.929 CAJ V7A 10 V7A CAK C11 C 0 1 N N N 121.945 28.866 19.502 0.646 -0.603 0.935 CAK V7A 11 V7A CAL C12 C 0 1 N N N 123.279 30.940 20.658 0.708 1.861 -0.406 CAL V7A 12 V7A CAM C13 C 0 1 N N S 123.483 30.793 19.275 2.024 1.235 -0.030 CAM V7A 13 V7A CAN C14 C 0 1 N N S 123.229 29.331 18.880 1.821 0.337 1.192 CAN V7A 14 V7A CAO C15 C 0 1 N N S 123.241 29.151 17.357 3.086 -0.420 1.547 CAO V7A 15 V7A CAP C16 C 0 1 N N N 122.662 31.684 18.585 2.465 0.360 -1.188 CAP V7A 16 V7A CAQ C17 C 0 1 N N N 122.206 31.392 17.312 3.406 -0.729 -0.929 CAQ V7A 17 V7A CAR C18 C 0 1 N N N 122.487 30.164 16.736 3.689 -1.108 0.360 CAR V7A 18 V7A CAS C19 C 0 1 N N N 119.984 26.196 23.443 -4.373 -1.775 1.112 CAS V7A 19 V7A CAV C20 C 0 1 N N N 120.601 22.535 22.744 -2.745 -4.664 0.119 CAV V7A 20 V7A CAW C21 C 0 1 N N N 122.107 24.950 23.365 -5.219 -2.574 -1.011 CAW V7A 21 V7A CBC C22 C 0 1 N N N 121.422 32.327 16.632 4.051 -1.422 -2.056 CBC V7A 22 V7A CBG C23 C 0 1 N N N 124.509 28.316 15.581 3.604 1.081 3.375 CBG V7A 23 V7A CBH C24 C 0 1 N N N 125.427 28.222 17.730 5.384 -0.110 2.246 CBH V7A 24 V7A NAT N1 N 0 1 N N N 120.664 24.899 23.667 -4.144 -2.688 -0.016 NAT V7A 25 V7A NBD N2 N 0 1 N N N 121.208 33.472 17.290 3.597 -2.627 -2.455 NBD V7A 26 V7A NBF N3 N 0 1 N N N 124.611 29.066 16.838 4.068 0.525 2.097 NBF V7A 27 V7A OAU O1 O 0 1 N N N 120.037 23.851 22.808 -4.002 -4.068 0.447 OAU V7A 28 V7A OAX O2 O 0 1 N N N 122.741 30.518 25.520 -4.071 3.571 -0.662 OAX V7A 29 V7A OAY O3 O 0 1 N N N 122.904 31.354 23.308 -1.571 3.173 -0.993 OAY V7A 30 V7A OAZ O4 O 0 1 N N N 123.670 32.109 21.237 0.729 2.927 -1.231 OAZ V7A 31 V7A OBA O5 O 0 1 N N N 124.820 31.145 18.911 2.997 2.244 0.248 OBA V7A 32 V7A OBB O6 O 0 1 N N N 122.395 32.780 19.069 2.045 0.561 -2.309 OBB V7A 33 V7A OBE O7 O 0 1 N N N 120.974 32.078 15.509 4.995 -0.909 -2.626 OBE V7A 34 V7A OBI O8 O 0 1 N N N 121.955 29.943 15.497 4.535 -2.129 0.564 OBI V7A 35 V7A H1 H1 H 0 1 N N N 120.366 26.676 26.019 -6.398 -0.037 0.719 H1 V7A 36 V7A H2 H2 H 0 1 N N N 121.609 28.588 26.975 -6.276 2.291 -0.059 H2 V7A 37 V7A H3 H3 H 0 1 N N N 120.174 28.664 21.460 -1.975 -1.433 1.181 H3 V7A 38 V7A H4 H4 H 0 1 N N N 121.021 27.080 21.486 -1.567 -1.065 -0.511 H4 V7A 39 V7A H5 H5 H 0 1 N N N 123.119 28.065 21.087 -0.829 0.574 1.946 H5 V7A 40 V7A H6 H6 H 0 1 N N N 121.141 29.596 19.330 0.595 -1.352 1.725 H6 V7A 41 V7A H7 H7 H 0 1 N N N 121.646 27.888 19.096 0.771 -1.094 -0.030 H7 V7A 42 V7A H8 H8 H 0 1 N N N 124.049 28.726 19.295 1.568 0.972 2.041 H8 V7A 43 V7A H9 H9 H 0 1 N N N 122.753 28.187 17.152 2.850 -1.166 2.306 H9 V7A 44 V7A H10 H10 H 0 1 N N N 119.877 26.352 22.359 -3.618 -1.948 1.878 H10 V7A 45 V7A H11 H11 H 0 1 N N N 118.988 26.153 23.908 -5.363 -1.957 1.531 H11 V7A 46 V7A H12 H12 H 0 1 N N N 120.002 21.912 22.064 -2.718 -5.687 0.497 H12 V7A 47 V7A H13 H13 H 0 1 N N N 121.634 22.597 22.371 -2.618 -4.673 -0.963 H13 V7A 48 V7A H14 H14 H 0 1 N N N 120.600 22.086 23.748 -1.940 -4.088 0.574 H14 V7A 49 V7A H15 H15 H 0 1 N N N 122.586 25.718 23.990 -5.193 -1.582 -1.462 H15 V7A 50 V7A H16 H16 H 0 1 N N N 122.561 23.970 23.576 -5.079 -3.329 -1.785 H16 V7A 51 V7A H17 H17 H 0 1 N N N 122.251 25.199 22.303 -6.182 -2.727 -0.525 H17 V7A 52 V7A H18 H18 H 0 1 N N N 125.508 28.213 15.133 3.357 0.267 4.057 H18 V7A 53 V7A H19 H19 H 0 1 N N N 124.093 27.318 15.783 4.392 1.695 3.812 H19 V7A 54 V7A H20 H20 H 0 1 N N N 123.849 28.855 14.885 2.719 1.694 3.205 H20 V7A 55 V7A H21 H21 H 0 1 N N N 125.548 28.724 18.701 5.290 -0.999 2.870 H21 V7A 56 V7A H22 H22 H 0 1 N N N 124.926 27.254 17.878 5.763 -0.394 1.264 H22 V7A 57 V7A H23 H23 H 0 1 N N N 126.416 28.058 17.277 6.075 0.591 2.713 H23 V7A 58 V7A H24 H24 H 0 1 N N N 120.654 34.192 16.873 2.798 -3.002 -2.052 H24 V7A 59 V7A H25 H25 H 0 1 N N N 121.602 33.607 18.199 4.068 -3.118 -3.146 H25 V7A 60 V7A H27 H27 H 0 1 N N N 122.966 31.088 24.794 -3.981 4.218 0.051 H27 V7A 61 V7A H28 H28 H 0 1 N N N 123.466 32.087 22.165 1.265 3.684 -0.957 H28 V7A 62 V7A H29 H29 H 0 1 N N N 124.858 32.070 18.699 3.129 2.873 -0.475 H29 V7A 63 V7A H30 H30 H 0 1 N N N 121.461 30.707 15.223 4.966 -2.505 -0.216 H30 V7A 64 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V7A OBI CAR SING N N 1 V7A OBE CBC DOUB N N 2 V7A CBG NBF SING N N 3 V7A CBC NBD SING N N 4 V7A CBC CAQ SING N N 5 V7A CAR CAQ DOUB N N 6 V7A CAR CAO SING N N 7 V7A NBF CAO SING N N 8 V7A NBF CBH SING N N 9 V7A CAQ CAP SING N N 10 V7A CAO CAN SING N N 11 V7A CAP OBB DOUB N N 12 V7A CAP CAM SING N N 13 V7A CAN CAM SING N N 14 V7A CAN CAK SING N N 15 V7A OBA CAM SING N N 16 V7A CAM CAL SING N N 17 V7A CAK CAJ SING N N 18 V7A CAL OAZ SING N N 19 V7A CAL CAI DOUB N N 20 V7A CAJ CAI SING N N 21 V7A CAJ CAG SING N N 22 V7A CAI CAH SING N N 23 V7A CAG CAF SING N N 24 V7A CAV OAU SING N N 25 V7A OAU NAT SING N N 26 V7A CAH OAY DOUB N N 27 V7A CAH CAE SING N N 28 V7A CAF CAE DOUB Y N 29 V7A CAF CAA SING Y N 30 V7A CAW NAT SING N N 31 V7A CAS NAT SING N N 32 V7A CAS CAA SING N N 33 V7A CAE CAD SING Y N 34 V7A CAA CAB DOUB Y N 35 V7A CAD OAX SING N N 36 V7A CAD CAC DOUB Y N 37 V7A CAB CAC SING Y N 38 V7A CAB H1 SING N N 39 V7A CAC H2 SING N N 40 V7A CAG H3 SING N N 41 V7A CAG H4 SING N N 42 V7A CAJ H5 SING N N 43 V7A CAK H6 SING N N 44 V7A CAK H7 SING N N 45 V7A CAN H8 SING N N 46 V7A CAO H9 SING N N 47 V7A CAS H10 SING N N 48 V7A CAS H11 SING N N 49 V7A CAV H12 SING N N 50 V7A CAV H13 SING N N 51 V7A CAV H14 SING N N 52 V7A CAW H15 SING N N 53 V7A CAW H16 SING N N 54 V7A CAW H17 SING N N 55 V7A CBG H18 SING N N 56 V7A CBG H19 SING N N 57 V7A CBG H20 SING N N 58 V7A CBH H21 SING N N 59 V7A CBH H22 SING N N 60 V7A CBH H23 SING N N 61 V7A NBD H24 SING N N 62 V7A NBD H25 SING N N 63 V7A OAX H27 SING N N 64 V7A OAZ H28 SING N N 65 V7A OBA H29 SING N N 66 V7A OBI H30 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V7A SMILES ACDLabs 12.01 "c1(ccc(O)c2c1CC3C(C2=O)=C(O)C4(C(C3)C(C(=C(C4=O)C(N)=O)O)N(C)C)O)CN(C)OC" V7A InChI InChI 1.03 "InChI=1S/C24H29N3O8/c1-26(2)18-13-8-11-7-12-10(9-27(3)35-4)5-6-14(28)16(12)19(29)15(11)21(31)24(13,34)22(32)17(20(18)30)23(25)33/h5-6,11,13,18,28,30-31,34H,7-9H2,1-4H3,(H2,25,33)/t11-,13-,18-,24-/m0/s1" V7A InChIKey InChI 1.03 PQJQFLNBMSCUSH-SBAJWEJLSA-N V7A SMILES_CANONICAL CACTVS 3.385 "CON(C)Cc1ccc(O)c2C(=O)C3=C(O)[C@@]4(O)[C@@H](C[C@@H]3Cc12)[C@H](N(C)C)C(=C(C(N)=O)C4=O)O" V7A SMILES CACTVS 3.385 "CON(C)Cc1ccc(O)c2C(=O)C3=C(O)[C]4(O)[CH](C[CH]3Cc12)[CH](N(C)C)C(=C(C(N)=O)C4=O)O" V7A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(ccc(c4C(=O)C3=C([C@@]2(C(=O)C(=C1O)C(=O)N)O)O)O)CN(C)OC" V7A SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)C1C2CC3Cc4c(ccc(c4C(=O)C3=C(C2(C(=O)C(=C1O)C(=O)N)O)O)O)CN(C)OC" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V7A "SYSTEMATIC NAME" ACDLabs 12.01 "(4S,4aS,5aR,12aS)-4-(dimethylamino)-3,10,12,12a-tetrahydroxy-7-{[methoxy(methyl)amino]methyl}-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide" V7A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{S},4~{a}~{S},5~{a}~{R},12~{a}~{S})-4-(dimethylamino)-7-[[methoxy(methyl)amino]methyl]-3,10,12,12~{a}-tetrakis(oxidanyl)-1,11-bis(oxidanylidene)-4~{a},5,5~{a},6-tetrahydro-4~{H}-tetracene-2-carboxamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id V7A _pdbx_chem_comp_synonyms.name "(4S,4aS,5aR,12aS)-4-(dimethylamino)-3,10,12,12a-tetrahydroxy-7-{[methoxy(methyl)amino]methyl}-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V7A "Create component" 2020-07-10 RCSB V7A "Initial release" 2020-08-05 RCSB ##