data_V7D # _chem_comp.id V7D _chem_comp.name "2,2-diamino-4-[(S)-({(2S)-1-[(carboxymethyl)amino]-1-oxobutan-2-yl}oxy)(hydroxy)phosphanyl]butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H24 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-13 _chem_comp.pdbx_modified_date 2021-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 401.351 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V7D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XPB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V7D OAC O1 O 0 1 N N N -25.229 -25.330 -6.859 -1.799 -3.421 1.231 OAC V7D 1 V7D CAA C1 C 0 1 N N N -25.928 -25.776 -7.804 -0.494 -3.607 0.975 CAA V7D 2 V7D OAD O2 O 0 1 N N N -26.753 -25.152 -8.518 0.105 -4.505 1.516 OAD V7D 3 V7D CAB C2 C 0 1 N N N -25.574 -27.181 -8.271 0.222 -2.694 0.013 CAB V7D 4 V7D NAE N1 N 0 1 N N N -26.787 -27.790 -8.804 1.504 -3.299 -0.372 NAE V7D 5 V7D NAF N2 N 0 1 N N N -25.376 -28.128 -7.164 -0.606 -2.499 -1.185 NAF V7D 6 V7D CAG C3 C 0 1 N N N -24.393 -27.098 -9.276 0.476 -1.343 0.684 CAG V7D 7 V7D CAH C4 C 0 1 N N N -23.915 -28.527 -9.612 1.203 -0.417 -0.293 CAH V7D 8 V7D PAI P1 P 0 1 N N R -22.513 -28.377 -10.718 1.506 1.193 0.507 PAI V7D 9 V7D OAK O3 O 0 1 N Y N -21.319 -27.611 -10.119 2.598 1.854 -0.475 OAK V7D 10 V7D OAL O4 O 0 1 N N N -22.131 -29.899 -11.170 0.174 2.012 0.125 OAL V7D 11 V7D CAM C5 C 0 1 N N S -20.968 -30.574 -10.642 -1.111 1.706 0.671 CAM V7D 12 V7D CAP C6 C 0 1 N N N -21.194 -32.100 -10.758 -1.646 2.924 1.428 CAP V7D 13 V7D CAQ C7 C 0 1 N N N -22.415 -32.464 -9.889 -0.750 3.208 2.635 CAQ V7D 14 V7D CAZ C8 C 0 1 N N N -19.747 -30.257 -11.512 -2.060 1.352 -0.444 CAZ V7D 15 V7D OAX O5 O 0 1 N N N -19.871 -29.797 -12.658 -1.674 1.360 -1.594 OAX V7D 16 V7D NBA N3 N 0 1 N N N -18.565 -30.604 -10.971 -3.337 1.026 -0.164 NBA V7D 17 V7D CBA C9 C 0 1 N N N -17.307 -30.391 -11.755 -4.260 0.681 -1.249 CBA V7D 18 V7D CBC C10 C 0 1 N N N -17.103 -31.620 -12.660 -5.615 0.359 -0.673 CBC V7D 19 V7D OBC O6 O 0 1 N N N -18.112 -32.336 -12.883 -6.625 0.013 -1.486 OBC V7D 20 V7D OBD O7 O 0 1 N N N -15.951 -31.819 -13.108 -5.791 0.412 0.521 OBD V7D 21 V7D H1 H1 H 0 1 N N N -25.410 -24.405 -6.740 -2.215 -4.031 1.855 H1 V7D 22 V7D H2 H2 H 0 1 N N N -27.493 -27.804 -8.096 1.975 -2.738 -1.066 H2 V7D 23 V7D H5 H5 H 0 1 N N N -26.179 -28.118 -6.569 -1.494 -2.084 -0.946 H5 V7D 24 V7D H14 H14 H 0 1 N N N -21.387 -32.371 -11.807 -1.650 3.790 0.766 H14 V7D 25 V7D H15 H15 H 0 1 N N N -20.305 -32.638 -10.398 -2.661 2.723 1.769 H15 V7D 26 V7D H16 H16 H 0 1 N N N -22.601 -33.546 -9.952 -1.131 4.076 3.174 H16 V7D 27 V7D H17 H17 H 0 1 N N N -22.217 -32.186 -8.843 -0.746 2.342 3.297 H17 V7D 28 V7D H18 H18 H 0 1 N N N -23.299 -31.919 -10.252 0.266 3.410 2.294 H18 V7D 29 V7D H19 H19 H 0 1 N N N -18.527 -31.001 -10.054 -3.646 1.019 0.755 H19 V7D 30 V7D H20 H20 H 0 1 N N N -16.453 -30.285 -11.070 -4.347 1.524 -1.933 H20 V7D 31 V7D H21 H21 H 0 1 N N N -17.399 -29.484 -12.371 -3.879 -0.187 -1.788 H21 V7D 32 V7D H22 H22 H 0 1 N N N -17.869 -33.059 -13.449 -7.475 -0.185 -1.070 H22 V7D 33 V7D C1 C11 C 0 1 Y Y N ? ? ? 3.784 1.192 -0.508 C1 V7D 34 V7D C2 C12 C 0 1 Y Y N ? ? ? 3.987 0.175 -1.430 C2 V7D 35 V7D C3 C13 C 0 1 Y Y N ? ? ? 5.194 -0.496 -1.462 C3 V7D 36 V7D C4 C14 C 0 1 Y Y N ? ? ? 6.199 -0.157 -0.575 C4 V7D 37 V7D C5 C15 C 0 1 Y Y N ? ? ? 5.999 0.855 0.345 C5 V7D 38 V7D C6 C16 C 0 1 Y N N ? ? ? 4.796 1.534 0.377 C6 V7D 39 V7D H3 H3 H 0 1 N N N -27.111 -27.258 -9.587 2.092 -3.444 0.435 H3 V7D 40 V7D H4 H4 H 0 1 N N N -25.246 -29.049 -7.532 -0.120 -1.943 -1.873 H4 V7D 41 V7D H6 H6 H 0 1 N N N -23.566 -26.529 -8.826 -0.475 -0.895 0.969 H6 V7D 42 V7D H7 H7 H 0 1 N N N -24.727 -26.595 -10.196 1.090 -1.489 1.572 H7 V7D 43 V7D H8 H8 H 0 1 N N N -24.723 -29.088 -10.104 2.155 -0.866 -0.579 H8 V7D 44 V7D H9 H9 H 0 1 N N N -23.614 -29.049 -8.692 0.589 -0.272 -1.182 H9 V7D 45 V7D H10 H10 H 0 1 N N N -20.776 -30.296 -9.595 -1.023 0.863 1.356 H10 V7D 46 V7D H11 H11 H 0 1 N N N ? ? ? 3.202 -0.090 -2.123 H11 V7D 47 V7D H12 H12 H 0 1 N N N ? ? ? 5.352 -1.288 -2.180 H12 V7D 48 V7D H13 H13 H 0 1 N N N ? ? ? 7.142 -0.683 -0.601 H13 V7D 49 V7D H23 H23 H 0 1 N N N ? ? ? 6.785 1.118 1.037 H23 V7D 50 V7D H24 H24 H 0 1 N N N ? ? ? 4.641 2.325 1.096 H24 V7D 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V7D OBD CBC DOUB N N 1 V7D OBC CBC SING N N 2 V7D CBC CBA SING N N 3 V7D OAX CAZ DOUB N N 4 V7D CBA NBA SING N N 5 V7D CAZ NBA SING N N 6 V7D CAZ CAM SING N N 7 V7D OAL PAI SING N N 8 V7D OAL CAM SING N N 9 V7D CAP CAM SING N N 10 V7D CAP CAQ SING N N 11 V7D PAI OAK SING N N 12 V7D PAI CAH SING N N 13 V7D CAH CAG SING N N 14 V7D CAG CAB SING N N 15 V7D NAE CAB SING N N 16 V7D OAD CAA DOUB N N 17 V7D CAB CAA SING N N 18 V7D CAB NAF SING N N 19 V7D CAA OAC SING N N 20 V7D OAC H1 SING N N 21 V7D NAE H2 SING N N 22 V7D NAF H5 SING N N 23 V7D CAP H14 SING N N 24 V7D CAP H15 SING N N 25 V7D CAQ H16 SING N N 26 V7D CAQ H17 SING N N 27 V7D CAQ H18 SING N N 28 V7D NBA H19 SING N N 29 V7D CBA H20 SING N N 30 V7D CBA H21 SING N N 31 V7D OBC H22 SING N N 32 V7D OAK C1 SING N N 33 V7D C1 C2 SING Y N 34 V7D C2 C3 DOUB Y N 35 V7D C3 C4 SING Y N 36 V7D C4 C5 DOUB Y N 37 V7D C5 C6 SING Y N 38 V7D C6 C1 DOUB Y N 39 V7D NAE H3 SING N N 40 V7D NAF H4 SING N N 41 V7D CAG H6 SING N N 42 V7D CAG H7 SING N N 43 V7D CAH H8 SING N N 44 V7D CAH H9 SING N N 45 V7D CAM H10 SING N N 46 V7D C2 H11 SING N N 47 V7D C3 H12 SING N N 48 V7D C4 H13 SING N N 49 V7D C5 H23 SING N N 50 V7D C6 H24 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V7D SMILES ACDLabs 12.01 "OC(=O)C(N)(N)CCP(Oc1ccccc1)OC(CC)C(NCC(O)=O)=O" V7D InChI InChI 1.03 "InChI=1S/C16H24N3O7P/c1-2-12(14(22)19-10-13(20)21)26-27(9-8-16(17,18)15(23)24)25-11-6-4-3-5-7-11/h3-7,12H,2,8-10,17-18H2,1H3,(H,19,22)(H,20,21)(H,23,24)/t12-,27-/m0/s1" V7D InChIKey InChI 1.03 TVQHRKKZDSLIPL-JWNZJDHWSA-N V7D SMILES_CANONICAL CACTVS 3.385 "CC[C@H](O[P@@](CCC(N)(N)C(O)=O)Oc1ccccc1)C(=O)NCC(O)=O" V7D SMILES CACTVS 3.385 "CC[CH](O[P](CCC(N)(N)C(O)=O)Oc1ccccc1)C(=O)NCC(O)=O" V7D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(C(=O)NCC(=O)O)O[P@@](CCC(C(=O)O)(N)N)Oc1ccccc1" V7D SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C(=O)NCC(=O)O)OP(CCC(C(=O)O)(N)N)Oc1ccccc1" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V7D "SYSTEMATIC NAME" ACDLabs 12.01 "2,2-diamino-4-[(R)-({(2S)-1-[(carboxymethyl)amino]-1-oxobutan-2-yl}oxy)(phenoxy)phosphanyl]butanoic acid" V7D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2,2-bis(azanyl)-4-[[1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-butan-2-yl]oxy-phenoxy-phosphanyl]butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V7D "Create component" 2020-07-13 RCSB V7D "Initial release" 2020-11-25 RCSB V7D "Modify descriptor" 2021-01-12 RCSB ##