data_V7K # _chem_comp.id V7K _chem_comp.name "(2~{S})-2-azanyl-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-3-[(7-nitro-2,1,3-benzoxadiazol-4-yl)sulfanyl]-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H18 N6 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-23 _chem_comp.pdbx_modified_date 2022-04-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 470.414 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V7K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OBO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V7K O8 O1 O 0 1 N N N 18.192 3.097 -13.359 -8.288 2.278 0.250 O8 V7K 1 V7K C15 C1 C 0 1 N N N 19.269 3.666 -13.539 -7.248 2.781 -0.105 C15 V7K 2 V7K O7 O2 O 0 1 N N N 20.043 3.266 -14.572 -7.223 3.577 -1.186 O7 V7K 3 V7K C C2 C 0 1 N N S 19.667 4.803 -12.614 -5.982 2.521 0.668 C V7K 4 V7K N N1 N 0 1 N N N 21.134 4.977 -12.413 -6.320 2.057 2.020 N V7K 5 V7K C1 C3 C 0 1 N N N 19.153 6.107 -13.191 -5.158 1.449 -0.048 C1 V7K 6 V7K C2 C4 C 0 1 N N N 17.629 6.267 -13.031 -3.817 1.273 0.667 C2 V7K 7 V7K C3 C5 C 0 1 N N N 17.209 7.660 -13.494 -3.006 0.217 -0.038 C3 V7K 8 V7K O6 O3 O 0 1 N N N 18.046 8.547 -13.573 -3.456 -0.341 -1.016 O6 V7K 9 V7K N1 N2 N 0 1 N N N 15.908 7.876 -13.695 -1.780 -0.108 0.419 N1 V7K 10 V7K C4 C6 C 0 1 N N R 15.262 9.179 -13.899 -0.992 -1.135 -0.267 C4 V7K 11 V7K C12 C7 C 0 1 N N N 14.393 9.503 -12.676 -1.385 -2.496 0.246 C12 V7K 12 V7K O5 O4 O 0 1 N N N 13.492 8.739 -12.369 -2.240 -2.599 1.100 O5 V7K 13 V7K N5 N3 N 0 1 N N N 14.593 10.632 -11.983 -0.787 -3.600 -0.244 N5 V7K 14 V7K C13 C8 C 0 1 N N N 13.607 11.230 -11.120 -1.170 -4.923 0.254 C13 V7K 15 V7K C14 C9 C 0 1 N N N 14.245 11.810 -9.898 -0.359 -5.980 -0.451 C14 V7K 16 V7K O4 O5 O 0 1 N N N 13.583 12.490 -9.127 0.456 -5.660 -1.285 O4 V7K 17 V7K O3 O6 O 0 1 N N N 15.512 11.529 -9.656 -0.541 -7.276 -0.153 O3 V7K 18 V7K C5 C10 C 0 1 N N N 14.372 9.209 -15.161 0.496 -0.899 0.002 C5 V7K 19 V7K S S1 S 0 1 N N N 14.052 10.919 -15.495 0.970 0.739 -0.616 S V7K 20 V7K C6 C11 C 0 1 Y N N 12.669 11.581 -16.272 2.686 0.829 -0.225 C6 V7K 21 V7K C11 C12 C 0 1 Y N N 11.918 10.873 -17.350 3.464 2.018 -0.556 C11 V7K 22 V7K N4 N4 N 0 1 Y N N 12.026 9.668 -17.959 3.289 3.182 -1.121 N4 V7K 23 V7K O2 O7 O 0 1 Y N N 11.012 9.661 -18.834 4.342 3.787 -1.121 O2 V7K 24 V7K N3 N5 N 0 1 Y N N 10.229 10.745 -18.881 5.291 3.214 -0.623 N3 V7K 25 V7K C10 C13 C 0 1 Y N N 10.750 11.567 -17.949 4.904 2.037 -0.196 C10 V7K 26 V7K C9 C14 C 0 1 Y N N 10.395 12.933 -17.471 5.452 0.913 0.447 C9 V7K 27 V7K N2 N6 N 1 1 N N N 9.281 13.572 -18.053 6.886 0.900 0.820 N2 V7K 28 V7K O1 O8 O 0 1 N N N 8.262 12.821 -18.691 7.589 1.863 0.571 O1 V7K 29 V7K O O9 O -1 1 N N N 9.190 14.963 -17.997 7.362 -0.073 1.377 O V7K 30 V7K C8 C15 C 0 1 Y N N 11.162 13.534 -16.463 4.671 -0.160 0.726 C8 V7K 31 V7K C7 C16 C 0 1 Y N N 12.249 12.874 -15.891 3.314 -0.211 0.401 C7 V7K 32 V7K H17 H1 H 0 1 N N N 19.612 2.558 -15.036 -8.062 3.717 -1.648 H17 V7K 33 V7K H H2 H 0 1 N N N 19.190 4.641 -11.636 -5.401 3.441 0.734 H V7K 34 V7K H2 H0 H 0 1 N N N 21.297 5.744 -11.793 -6.808 2.773 2.536 H2 V7K 35 V7K H3 H4 H 0 1 N N N 21.518 4.142 -12.018 -6.859 1.205 1.986 H3 V7K 36 V7K H5 H6 H 0 1 N N N 19.400 6.140 -14.262 -5.702 0.504 -0.036 H5 V7K 37 V7K H4 H7 H 0 1 N N N 19.651 6.941 -12.675 -4.983 1.754 -1.079 H4 V7K 38 V7K H7 H8 H 0 1 N N N 17.356 6.135 -11.974 -3.273 2.217 0.655 H7 V7K 39 V7K H6 H9 H 0 1 N N N 17.115 5.508 -13.640 -3.993 0.968 1.699 H6 V7K 40 V7K H8 H10 H 0 1 N N N 15.314 7.071 -13.708 -1.420 0.338 1.201 H8 V7K 41 V7K H1 H11 H 0 1 N N N 16.032 9.958 -13.998 -1.180 -1.082 -1.339 H1 V7K 42 V7K H13 H12 H 0 1 N N N 15.479 11.087 -12.070 -0.103 -3.518 -0.928 H13 V7K 43 V7K H14 H13 H 0 1 N N N 13.087 12.029 -11.668 -0.981 -4.976 1.327 H14 V7K 44 V7K H15 H14 H 0 1 N N N 12.881 10.461 -10.816 -2.230 -5.091 0.063 H15 V7K 45 V7K H16 H15 H 0 1 N N N 15.774 11.929 -8.835 0.003 -7.917 -0.632 H16 V7K 46 V7K H10 H16 H 0 1 N N N 13.429 8.673 -14.976 0.685 -0.952 1.074 H10 V7K 47 V7K H9 H17 H 0 1 N N N 14.897 8.746 -16.010 1.083 -1.663 -0.508 H9 V7K 48 V7K H12 H18 H 0 1 N N N 10.906 14.527 -16.123 5.117 -1.011 1.220 H12 V7K 49 V7K H11 H19 H 0 1 N N N 12.801 13.380 -15.113 2.745 -1.093 0.655 H11 V7K 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V7K N3 O2 SING Y N 1 V7K N3 C10 DOUB Y N 2 V7K O2 N4 SING Y N 3 V7K O1 N2 DOUB N N 4 V7K N2 O SING N N 5 V7K N2 C9 SING N N 6 V7K N4 C11 DOUB Y N 7 V7K C10 C9 SING Y N 8 V7K C10 C11 SING Y N 9 V7K C9 C8 DOUB Y N 10 V7K C11 C6 SING Y N 11 V7K C8 C7 SING Y N 12 V7K C6 C7 DOUB Y N 13 V7K C6 S SING N N 14 V7K S C5 SING N N 15 V7K C5 C4 SING N N 16 V7K O7 C15 SING N N 17 V7K C4 N1 SING N N 18 V7K C4 C12 SING N N 19 V7K N1 C3 SING N N 20 V7K O6 C3 DOUB N N 21 V7K C15 O8 DOUB N N 22 V7K C15 C SING N N 23 V7K C3 C2 SING N N 24 V7K C1 C2 SING N N 25 V7K C1 C SING N N 26 V7K C12 O5 DOUB N N 27 V7K C12 N5 SING N N 28 V7K C N SING N N 29 V7K N5 C13 SING N N 30 V7K C13 C14 SING N N 31 V7K C14 O3 SING N N 32 V7K C14 O4 DOUB N N 33 V7K O7 H17 SING N N 34 V7K C H SING N N 35 V7K N H2 SING N N 36 V7K N H3 SING N N 37 V7K C1 H5 SING N N 38 V7K C1 H4 SING N N 39 V7K C2 H7 SING N N 40 V7K C2 H6 SING N N 41 V7K N1 H8 SING N N 42 V7K C4 H1 SING N N 43 V7K N5 H13 SING N N 44 V7K C13 H14 SING N N 45 V7K C13 H15 SING N N 46 V7K O3 H16 SING N N 47 V7K C5 H10 SING N N 48 V7K C5 H9 SING N N 49 V7K C8 H12 SING N N 50 V7K C7 H11 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V7K InChI InChI 1.03 "InChI=1S/C16H18N6O9S/c17-7(16(27)28)1-4-11(23)19-8(15(26)18-5-12(24)25)6-32-10-3-2-9(22(29)30)13-14(10)21-31-20-13/h2-3,7-8H,1,4-6,17H2,(H,18,26)(H,19,23)(H,24,25)(H,27,28)/t7-,8-/m0/s1" V7K InChIKey InChI 1.03 DLEOMDYTCAPLNH-YUMQZZPRSA-N V7K SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCC(=O)N[C@@H](CSc1ccc(c2nonc12)[N+]([O-])=O)C(=O)NCC(O)=O)C(O)=O" V7K SMILES CACTVS 3.385 "N[CH](CCC(=O)N[CH](CSc1ccc(c2nonc12)[N+]([O-])=O)C(=O)NCC(O)=O)C(O)=O" V7K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1[N+](=O)[O-])non2)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N" V7K SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1[N+](=O)[O-])non2)SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id V7K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-3-[(7-nitro-2,1,3-benzoxadiazol-4-yl)sulfanyl]-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V7K "Create component" 2021-04-23 PDBE V7K "Modify atom id" 2021-04-26 PDBE V7K "Initial release" 2022-04-20 RCSB ##