data_V7N
#
_chem_comp.id V7N
_chem_comp.name "(2~{E},4~{E},6~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{Z},24~{E},26~{E},28~{E})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C41 H54 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-04-23
_chem_comp.pdbx_modified_date 2022-02-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 610.865
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code V7N
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7O0U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V7N C1 C1 C 0 1 N N N 179.757 260.173 208.765 16.862 -0.761 1.002 C1 V7N 1
V7N C10 C2 C 0 1 N N N 175.775 263.068 199.512 6.328 0.897 0.130 C10 V7N 2
V7N C11 C3 C 0 1 N N N 175.416 263.383 198.195 5.119 0.432 -0.369 C11 V7N 3
V7N C12 C4 C 0 1 N N N 174.168 262.985 197.697 3.930 1.013 0.043 C12 V7N 4
V7N C13 C5 C 0 1 N N N 173.660 263.157 196.396 2.716 0.546 -0.459 C13 V7N 5
V7N C14 C6 C 0 1 N N N 172.295 262.876 196.145 1.530 1.126 -0.048 C14 V7N 6
V7N C15 C7 C 0 1 N N N 171.707 262.953 194.880 0.313 0.658 -0.550 C15 V7N 7
V7N C16 C8 C 0 1 N N N 170.410 262.495 194.587 -0.870 1.236 -0.140 C16 V7N 8
V7N C17 C9 C 0 1 N N N 169.910 262.553 193.282 -2.090 0.768 -0.644 C17 V7N 9
V7N C18 C10 C 0 1 N N N 168.673 262.061 192.812 -3.270 1.344 -0.235 C18 V7N 10
V7N C19 C11 C 0 1 N N N 168.415 262.196 191.428 -4.494 0.874 -0.740 C19 V7N 11
V7N C2 C12 C 0 1 N N N 179.020 261.473 208.397 16.087 0.501 0.618 C2 V7N 12
V7N C20 C13 C 0 1 N N N 167.293 261.811 190.701 -5.660 1.444 -0.336 C20 V7N 13
V7N C21 C14 C 0 1 N N N 167.247 261.999 189.294 -6.894 0.970 -0.845 C21 V7N 14
V7N C22 C15 C 0 1 N N N 166.208 261.615 188.474 -8.042 1.530 -0.448 C22 V7N 15
V7N C23 C16 C 0 1 N N N 166.265 261.819 186.997 -9.354 1.026 -0.990 C23 V7N 16
V7N C24 C17 C 0 1 N N N 166.833 260.558 186.364 -9.944 -0.002 -0.022 C24 V7N 17
V7N C25 C18 C 0 1 N N N 167.086 260.455 184.899 -11.257 -0.506 -0.564 C25 V7N 18
V7N C26 C19 C 0 1 N N N 166.169 260.511 183.908 -12.352 -0.474 0.200 C26 V7N 19
V7N C27 C20 C 0 1 N N N 166.540 260.294 182.479 -13.647 -0.854 -0.361 C27 V7N 20
V7N C28 C21 C 0 1 N N N 166.380 261.416 181.468 -14.758 -0.821 0.415 C28 V7N 21
V7N C29 C22 C 0 1 N N N 166.703 261.107 180.035 -16.007 -1.187 -0.126 C29 V7N 22
V7N C3 C23 C 0 1 N N N 179.429 262.099 207.120 14.780 0.113 -0.023 C3 V7N 23
V7N C30 C24 C 0 1 N N N 179.278 259.035 207.871 18.130 -0.369 1.764 C30 V7N 24
V7N C31 C25 C 0 1 N N N 181.256 260.357 208.600 15.986 -1.647 1.891 C31 V7N 25
V7N C33 C26 C 0 1 N N N 180.385 263.110 204.418 12.352 -0.713 -1.349 C33 V7N 26
V7N C34 C27 C 0 1 N N N 178.154 263.936 199.526 7.510 -0.757 -1.216 C34 V7N 27
V7N C35 C28 C 0 1 N N N 174.519 263.597 195.272 2.696 -0.590 -1.449 C35 V7N 28
V7N C36 C29 C 0 1 N N N 167.723 261.418 193.747 -3.250 2.480 0.755 C36 V7N 29
V7N C37 C30 C 0 1 N N N 165.001 260.946 189.002 -8.022 2.666 0.542 C37 V7N 30
V7N C38 C31 C 0 1 N N N 164.725 260.742 184.144 -12.252 -0.048 1.642 C38 V7N 31
V7N C39 C32 C 0 1 N N N 167.358 260.093 179.396 -17.121 -1.155 0.652 C39 V7N 32
V7N C4 C33 C 0 1 N N N 178.757 261.907 205.949 13.630 0.584 0.467 C4 V7N 33
V7N C40 C34 C 0 1 N N N 167.489 260.123 177.922 -18.374 -1.521 0.108 C40 V7N 34
V7N C41 C35 C 0 1 N N N 178.037 259.818 210.444 17.951 -2.681 0.068 C41 V7N 35
V7N C43 C36 C 0 1 N N N 167.998 258.878 179.963 -17.021 -0.728 2.094 C43 V7N 36
V7N C5 C37 C 0 1 N N N 179.066 262.495 204.688 12.362 0.207 -0.155 C5 V7N 37
V7N C6 C38 C 0 1 N N N 178.067 262.475 203.703 11.194 0.685 0.342 C6 V7N 38
V7N C7 C39 C 0 1 N N N 178.150 263.011 202.409 9.971 0.321 -0.258 C7 V7N 39
V7N C8 C40 C 0 1 N N N 177.107 262.803 201.504 8.802 0.800 0.240 C8 V7N 40
V7N C9 C41 C 0 1 N N N 177.009 263.262 200.176 7.529 0.310 -0.286 C9 V7N 41
V7N O32 O1 O 0 1 N N N 179.414 259.923 210.139 17.220 -1.479 -0.181 O32 V7N 42
V7N O42 O2 O 0 1 N N N 178.165 264.474 198.418 8.554 -1.248 -1.598 O42 V7N 43
V7N O44 O3 O 0 1 N N N 166.834 261.093 177.277 -19.480 -1.489 0.881 O44 V7N 44
V7N O45 O4 O 0 1 N N N 168.131 259.333 177.217 -18.454 -1.866 -1.056 O45 V7N 45
V7N H1 H1 H 0 1 N N N 174.997 262.611 200.106 6.342 1.711 0.840 H1 V7N 46
V7N H2 H2 H 0 1 N N N 176.100 263.932 197.564 5.105 -0.382 -1.079 H2 V7N 47
V7N H3 H3 H 0 1 N N N 173.516 262.485 198.398 3.944 1.827 0.752 H3 V7N 48
V7N H4 H4 H 0 1 N N N 171.673 262.586 196.979 1.544 1.940 0.661 H4 V7N 49
V7N H5 H5 H 0 1 N N N 172.283 263.391 194.078 0.299 -0.156 -1.260 H5 V7N 50
V7N H6 H6 H 0 1 N N N 169.794 262.094 195.378 -0.856 2.050 0.569 H6 V7N 51
V7N H7 H7 H 0 1 N N N 170.544 263.030 192.549 -2.104 -0.047 -1.353 H7 V7N 52
V7N H9 H9 H 0 1 N N N 169.201 262.665 190.854 -4.508 0.060 -1.449 H9 V7N 53
V7N H10 H10 H 0 1 N N N 179.195 262.201 209.203 15.892 1.093 1.512 H10 V7N 54
V7N H11 H11 H 0 1 N N N 177.945 261.247 208.334 16.676 1.089 -0.085 H11 V7N 55
V7N H12 H12 H 0 1 N N N 166.451 261.366 191.210 -5.646 2.258 0.374 H12 V7N 56
V7N H13 H13 H 0 1 N N N 168.094 262.482 188.829 -6.909 0.156 -1.555 H13 V7N 57
V7N H14 H14 H 0 1 N N N 166.913 262.677 186.764 -10.046 1.860 -1.101 H14 V7N 58
V7N H15 H15 H 0 1 N N N 165.254 262.008 186.608 -9.191 0.558 -1.961 H15 V7N 59
V7N H16 H16 H 0 1 N N N 166.134 259.746 186.614 -9.252 -0.836 0.089 H16 V7N 60
V7N H17 H17 H 0 1 N N N 167.799 260.374 186.857 -10.108 0.466 0.949 H17 V7N 61
V7N H18 H18 H 0 1 N N N 168.114 260.321 184.596 -11.313 -0.893 -1.571 H18 V7N 62
V7N H19 H19 H 0 1 N N N 166.924 259.335 182.162 -13.718 -1.159 -1.395 H19 V7N 63
V7N H20 H20 H 0 1 N N N 166.047 262.398 181.768 -14.687 -0.515 1.449 H20 V7N 64
V7N H21 H21 H 0 1 N N N 166.333 261.858 179.353 -16.079 -1.493 -1.160 H21 V7N 65
V7N H22 H22 H 0 1 N N N 180.300 262.737 207.115 14.773 -0.547 -0.878 H22 V7N 66
V7N H23 H23 H 0 1 N N N 179.808 258.109 208.139 18.754 0.262 1.131 H23 V7N 67
V7N H24 H24 H 0 1 N N N 178.196 258.891 208.009 17.857 0.178 2.666 H24 V7N 68
V7N H25 H25 H 0 1 N N N 179.483 259.284 206.819 18.682 -1.268 2.037 H25 V7N 69
V7N H26 H26 H 0 1 N N N 181.598 261.179 209.246 16.538 -2.546 2.164 H26 V7N 70
V7N H27 H27 H 0 1 N N N 181.773 259.428 208.883 15.714 -1.099 2.793 H27 V7N 71
V7N H28 H28 H 0 1 N N N 181.483 260.597 207.551 15.083 -1.926 1.348 H28 V7N 72
V7N H29 H29 H 0 1 N N N 181.021 263.023 205.312 12.284 -1.747 -1.010 H29 V7N 73
V7N H30 H30 H 0 1 N N N 180.865 262.592 203.575 11.495 -0.480 -1.980 H30 V7N 74
V7N H31 H31 H 0 1 N N N 180.250 264.172 204.167 13.271 -0.578 -1.919 H31 V7N 75
V7N H32 H32 H 0 1 N N N 179.079 263.959 200.082 6.569 -1.135 -1.586 H32 V7N 76
V7N H33 H33 H 0 1 N N N 175.542 263.771 195.638 2.631 -1.537 -0.913 H33 V7N 77
V7N H34 H34 H 0 1 N N N 174.535 262.818 194.496 1.833 -0.484 -2.106 H34 V7N 78
V7N H35 H35 H 0 1 N N N 174.118 264.529 194.847 3.610 -0.570 -2.042 H35 V7N 79
V7N H36 H36 H 0 1 N N N 168.142 261.432 194.764 -3.185 3.428 0.220 H36 V7N 80
V7N H37 H37 H 0 1 N N N 166.770 261.967 193.736 -4.164 2.461 1.349 H37 V7N 81
V7N H38 H38 H 0 1 N N N 167.550 260.377 193.436 -2.388 2.374 1.413 H38 V7N 82
V7N H39 H39 H 0 1 N N N 165.080 260.856 190.095 -7.956 3.613 0.007 H39 V7N 83
V7N H40 H40 H 0 1 N N N 164.111 261.540 188.746 -8.936 2.647 1.135 H40 V7N 84
V7N H41 H41 H 0 1 N N N 164.913 259.944 188.557 -7.159 2.560 1.200 H41 V7N 85
V7N H42 H42 H 0 1 N N N 164.548 260.891 185.219 -12.289 1.040 1.703 H42 V7N 86
V7N H43 H43 H 0 1 N N N 164.402 261.637 183.592 -13.083 -0.472 2.205 H43 V7N 87
V7N H44 H44 H 0 1 N N N 164.153 259.870 183.796 -11.310 -0.403 2.062 H44 V7N 88
V7N H45 H45 H 0 1 N N N 177.906 261.243 205.980 13.637 1.243 1.322 H45 V7N 89
V7N H46 H46 H 0 1 N N N 177.913 259.628 211.520 18.184 -3.166 -0.880 H46 V7N 90
V7N H47 H47 H 0 1 N N N 177.530 260.757 210.177 18.877 -2.442 0.591 H47 V7N 91
V7N H48 H48 H 0 1 N N N 177.597 258.988 209.872 17.350 -3.352 0.681 H48 V7N 92
V7N H49 H49 H 0 1 N N N 167.886 258.881 181.057 -17.162 0.351 2.164 H49 V7N 93
V7N H50 H50 H 0 1 N N N 167.515 257.981 179.548 -17.791 -1.234 2.677 H50 V7N 94
V7N H51 H51 H 0 1 N N N 169.067 258.872 179.704 -16.038 -0.992 2.483 H51 V7N 95
V7N H52 H52 H 0 1 N N N 177.136 261.997 203.969 11.201 1.344 1.198 H52 V7N 96
V7N H53 H53 H 0 1 N N N 179.018 263.582 202.114 9.964 -0.338 -1.113 H53 V7N 97
V7N H54 H54 H 0 1 N N N 176.274 262.219 201.867 8.813 1.542 1.024 H54 V7N 98
V7N H56 H56 H 0 1 N N N 166.980 261.007 176.342 -20.288 -1.757 0.422 H56 V7N 99
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V7N O45 C40 DOUB N N 1
V7N O44 C40 SING N N 2
V7N C40 C39 SING N N 3
V7N C39 C43 SING N N 4
V7N C39 C29 DOUB N E 5
V7N C29 C28 SING N N 6
V7N C28 C27 DOUB N E 7
V7N C27 C26 SING N N 8
V7N C26 C38 SING N N 9
V7N C26 C25 DOUB N E 10
V7N C25 C24 SING N N 11
V7N C24 C23 SING N N 12
V7N C23 C22 SING N N 13
V7N C22 C37 SING N N 14
V7N C22 C21 DOUB N E 15
V7N C21 C20 SING N N 16
V7N C20 C19 DOUB N E 17
V7N C19 C18 SING N N 18
V7N C18 C17 DOUB N E 19
V7N C18 C36 SING N N 20
V7N C17 C16 SING N N 21
V7N C16 C15 DOUB N E 22
V7N C15 C14 SING N N 23
V7N C35 C13 SING N N 24
V7N C14 C13 DOUB N E 25
V7N C13 C12 SING N N 26
V7N C12 C11 DOUB N E 27
V7N C11 C10 SING N N 28
V7N O42 C34 DOUB N N 29
V7N C10 C9 DOUB N Z 30
V7N C34 C9 SING N N 31
V7N C9 C8 SING N N 32
V7N C8 C7 DOUB N E 33
V7N C7 C6 SING N N 34
V7N C6 C5 DOUB N E 35
V7N C33 C5 SING N N 36
V7N C5 C4 SING N N 37
V7N C4 C3 DOUB N E 38
V7N C3 C2 SING N N 39
V7N C30 C1 SING N N 40
V7N C2 C1 SING N N 41
V7N C31 C1 SING N N 42
V7N C1 O32 SING N N 43
V7N O32 C41 SING N N 44
V7N C10 H1 SING N N 45
V7N C11 H2 SING N N 46
V7N C12 H3 SING N N 47
V7N C14 H4 SING N N 48
V7N C15 H5 SING N N 49
V7N C16 H6 SING N N 50
V7N C17 H7 SING N N 51
V7N C19 H9 SING N N 52
V7N C2 H10 SING N N 53
V7N C2 H11 SING N N 54
V7N C20 H12 SING N N 55
V7N C21 H13 SING N N 56
V7N C23 H14 SING N N 57
V7N C23 H15 SING N N 58
V7N C24 H16 SING N N 59
V7N C24 H17 SING N N 60
V7N C25 H18 SING N N 61
V7N C27 H19 SING N N 62
V7N C28 H20 SING N N 63
V7N C29 H21 SING N N 64
V7N C3 H22 SING N N 65
V7N C30 H23 SING N N 66
V7N C30 H24 SING N N 67
V7N C30 H25 SING N N 68
V7N C31 H26 SING N N 69
V7N C31 H27 SING N N 70
V7N C31 H28 SING N N 71
V7N C33 H29 SING N N 72
V7N C33 H30 SING N N 73
V7N C33 H31 SING N N 74
V7N C34 H32 SING N N 75
V7N C35 H33 SING N N 76
V7N C35 H34 SING N N 77
V7N C35 H35 SING N N 78
V7N C36 H36 SING N N 79
V7N C36 H37 SING N N 80
V7N C36 H38 SING N N 81
V7N C37 H39 SING N N 82
V7N C37 H40 SING N N 83
V7N C37 H41 SING N N 84
V7N C38 H42 SING N N 85
V7N C38 H43 SING N N 86
V7N C38 H44 SING N N 87
V7N C4 H45 SING N N 88
V7N C41 H46 SING N N 89
V7N C41 H47 SING N N 90
V7N C41 H48 SING N N 91
V7N C43 H49 SING N N 92
V7N C43 H50 SING N N 93
V7N C43 H51 SING N N 94
V7N C6 H52 SING N N 95
V7N C7 H53 SING N N 96
V7N C8 H54 SING N N 97
V7N O44 H56 SING N N 98
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V7N InChI InChI 1.03 "InChI=1S/C41H54O4/c1-33(20-12-21-35(3)22-13-23-36(4)24-14-28-38(6)40(43)44)18-10-11-19-34(2)25-15-29-39(32-42)30-16-26-37(5)27-17-31-41(7,8)45-9/h10-12,14-21,23-30,32H,13,22,31H2,1-9H3,(H,43,44)/b11-10+,20-12+,24-14+,25-15+,27-17+,30-16+,33-18+,34-19+,35-21+,36-23+,37-26+,38-28+,39-29-"
V7N InChIKey InChI 1.03 XLPMAXZHNMJTID-YBNWOPDJSA-N
V7N SMILES_CANONICAL CACTVS 3.385 "COC(C)(C)C/C=C/C(C)=C/C=C/C(C=O)=C/C=C/C(C)=C/C=C/C=C(C)/C=C/C=C(C)/CC/C=C(C)/C=C/C=C(C)/C(O)=O"
V7N SMILES CACTVS 3.385 "COC(C)(C)CC=CC(C)=CC=CC(C=O)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)CCC=C(C)C=CC=C(C)C(O)=O"
V7N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C(=C\C=C\C(=C\C=C\C=C(/C)\C=C\C=C(\C=C\C=C(/C)\C=C\CC(C)(C)OC)/C=O)\C)/CC/C=C(\C)/C=C/C=C(\C)/C(=O)O"
V7N SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CC=CC(=CC=CC=C(C)C=CC=C(C=CC=C(C)C=CCC(C)(C)OC)C=O)C)CCC=C(C)C=CC=C(C)C(=O)O"
#
_pdbx_chem_comp_identifier.comp_id V7N
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{E},4~{E},6~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{Z},24~{E},26~{E},28~{E})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V7N "Create component" 2021-04-23 PDBE
V7N "Other modification" 2021-06-09 EBI
V7N "Initial release" 2022-03-02 RCSB
##