data_V7T # _chem_comp.id V7T _chem_comp.name "(2R)-6-azanyl-2-carbamimidamido-hexanoic acid" _chem_comp.type peptide-like _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H16 N4 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-23 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 188.228 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V7T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OBV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V7T N1 N1 N 0 1 N N N N N N 6.240 -9.972 4.880 2.573 -1.359 1.255 N1 V7T 1 V7T N2 N2 N 0 1 N N N N N N 4.685 -10.195 3.111 2.341 -2.810 -0.540 N2 V7T 2 V7T CA CA C 0 1 N N R Y N N 3.503 -12.375 4.534 0.770 0.473 0.243 C1 V7T 3 V7T CD CD C 0 1 N N N N N N 0.827 -14.459 6.421 -3.057 0.376 -0.174 C5 V7T 4 V7T CE CE C 0 1 N N N N N N -0.320 -15.344 5.964 -4.101 -0.644 0.287 C6 V7T 5 V7T NZ NZ N 0 1 N N N N N N -1.246 -14.640 5.087 -5.436 -0.201 -0.134 N3 V7T 6 V7T CG CG C 0 1 N N N N N N 1.647 -13.958 5.253 -1.665 -0.085 0.265 C4 V7T 7 V7T CB CB C 0 1 N N N N N N 2.779 -13.056 5.694 -0.622 0.934 -0.195 C3 V7T 8 V7T C2 C2 C 0 1 N N N N N N 5.138 -10.524 4.289 2.019 -1.642 0.110 C2 V7T 9 V7T N N N 0 1 N N N Y Y N 4.544 -11.517 5.068 1.112 -0.772 -0.449 N V7T 10 V7T C C C 0 1 N N N Y N Y 4.145 -13.411 3.612 1.783 1.535 -0.101 C V7T 11 V7T O O O 0 1 N N N Y N Y 5.094 -14.079 4.013 2.697 1.278 -0.848 O V7T 12 V7T H1 H1 H 0 1 N N N N N N 6.429 -10.379 5.774 2.346 -0.535 1.713 H1 V7T 13 V7T H4 H2 H 0 1 N N N N N N 3.883 -10.660 2.736 2.980 -3.424 -0.146 H2 V7T 14 V7T H3 H3 H 0 1 N N N N N N 5.139 -9.477 2.583 1.928 -3.020 -1.392 H3 V7T 15 V7T HA HA H 0 1 N N N Y N N 2.779 -11.780 3.958 0.774 0.303 1.320 H4 V7T 16 V7T HD2 HD2 H 0 1 N N N N N N 0.416 -13.595 6.965 -3.086 0.460 -1.260 H5 V7T 17 V7T HD3 HD3 H 0 1 N N N N N N 1.479 -15.038 7.092 -3.275 1.346 0.272 H6 V7T 18 V7T HE2 HE2 H 0 1 N N N N N N 0.094 -16.207 5.422 -3.882 -1.614 -0.159 H7 V7T 19 V7T HE3 HE3 H 0 1 N N N N N N -0.870 -15.696 6.849 -4.071 -0.728 1.373 H8 V7T 20 V7T HZ1 HZ1 H 0 1 N N N N N N -1.982 -15.259 4.812 -5.470 -0.053 -1.132 H9 V7T 21 V7T HZ2 HZ2 H 0 1 N Y N N N N -1.634 -13.856 5.572 -6.144 -0.859 0.158 H10 V7T 22 V7T HG2 HG2 H 0 1 N N N N N N 2.070 -14.823 4.720 -1.636 -0.170 1.351 H12 V7T 23 V7T HG3 HG3 H 0 1 N N N N N N 0.989 -13.395 4.574 -1.447 -1.056 -0.181 H13 V7T 24 V7T HB2 HB2 H 0 1 N N N N N N 3.508 -13.661 6.253 -0.840 1.905 0.251 H14 V7T 25 V7T HB3 HB3 H 0 1 N N N N N N 2.367 -12.277 6.353 -0.651 1.019 -1.282 H15 V7T 26 V7T H H H 0 1 N Y N Y Y N 4.842 -11.640 6.015 0.700 -0.982 -1.301 H16 V7T 27 V7T OXT OXT O 0 1 N Y N Y N Y 3.629 -13.547 2.388 1.669 2.766 0.422 O1 V7T 28 V7T HXT HXT H 0 1 N Y N Y N Y 4.107 -14.218 1.915 2.342 3.413 0.172 H11 V7T 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V7T N1 C2 DOUB N N 1 V7T N2 C2 SING N N 2 V7T CA CB SING N N 3 V7T CA N SING N N 4 V7T CA C SING N N 5 V7T CD CE SING N N 6 V7T CD CG SING N N 7 V7T CE NZ SING N N 8 V7T CG CB SING N N 9 V7T C2 N SING N N 10 V7T C O DOUB N N 11 V7T N1 H1 SING N N 12 V7T N2 H4 SING N N 13 V7T N2 H3 SING N N 14 V7T CA HA SING N N 15 V7T CD HD2 SING N N 16 V7T CD HD3 SING N N 17 V7T CE HE2 SING N N 18 V7T CE HE3 SING N N 19 V7T NZ HZ1 SING N N 20 V7T NZ HZ2 SING N N 21 V7T CG HG2 SING N N 22 V7T CG HG3 SING N N 23 V7T CB HB2 SING N N 24 V7T CB HB3 SING N N 25 V7T N H SING N N 26 V7T C OXT SING N N 27 V7T OXT HXT SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V7T InChI InChI 1.03 "InChI=1S/C7H16N4O2/c8-4-2-1-3-5(6(12)13)11-7(9)10/h5H,1-4,8H2,(H,12,13)(H4,9,10,11)/t5-/m1/s1" V7T InChIKey InChI 1.03 FCYNCKFWUCHGHB-RXMQYKEDSA-N V7T SMILES_CANONICAL CACTVS 3.385 "NCCCC[C@@H](NC(N)=N)C(O)=O" V7T SMILES CACTVS 3.385 "NCCCC[CH](NC(N)=N)C(O)=O" V7T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N[C@H](CCCCN)C(=O)O" V7T SMILES "OpenEye OEToolkits" 2.0.7 "C(CCN)CC(C(=O)O)NC(=N)N" # _pdbx_chem_comp_identifier.comp_id V7T _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-6-azanyl-2-carbamimidamido-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V7T "Create component" 2021-04-23 PDBE V7T "Modify coordinates" 2021-04-23 PDBE V7T "Modify linking type" 2021-04-28 PDBE V7T "Modify internal type" 2021-04-29 PDBE V7T "Initial release" 2022-04-06 RCSB V7T "Modify backbone" 2023-11-03 PDBE #