data_V8C # _chem_comp.id V8C _chem_comp.name "5-aminocarbonyl-2-[3-(dimethylamino)-6-dimethylazaniumylidene-xanthen-9-yl]benzoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H23 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-10 _chem_comp.pdbx_modified_date 2024-05-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 429.468 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V8C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8JY0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V8C C1 C1 C 0 1 N N N N N N 24.832 41.628 46.347 4.512 4.615 0.202 C1 V8C 1 V8C C2 C2 C 0 1 N N N N N N 25.896 43.070 44.658 2.334 3.594 -0.051 C2 V8C 2 V8C C3 C3 C 0 1 N N N N N N 27.177 42.689 45.098 2.972 2.335 -0.074 C3 V8C 3 V8C C4 C4 C 0 1 N N N N N N 28.288 43.246 44.531 2.225 1.195 -0.146 C4 V8C 4 V8C C5 C5 C 0 1 N N N N N N 28.240 44.215 43.513 0.766 1.292 -0.197 C5 V8C 5 V8C C6 C6 C 0 1 N N N N N N 26.938 44.578 43.076 0.132 2.553 -0.173 C6 V8C 6 V8C C7 C7 C 0 1 N N N N N N 25.815 44.048 43.622 0.875 3.681 -0.096 C7 V8C 7 V8C O1 O1 O -1 1 N N N N N N 28.169 46.945 44.125 -2.212 -0.882 3.050 O1 V8C 8 V8C N N1 N 1 1 N N N N N N 24.759 42.544 45.225 3.061 4.701 0.019 N V8C 9 V8C C C8 C 0 1 N N N N N N 23.440 42.905 44.747 2.412 6.010 -0.089 C V8C 10 V8C O O2 O 0 1 N N N N N N 29.481 42.786 45.020 2.832 -0.010 -0.169 O V8C 11 V8C C10 C9 C 0 1 Y N N N N N 31.940 44.824 43.218 0.029 -2.377 -0.362 C10 V8C 12 V8C C11 C10 C 0 1 Y N N N N N 33.077 44.364 43.804 0.710 -3.558 -0.380 C11 V8C 13 V8C C12 C11 C 0 1 Y N N N N N 33.036 43.355 44.819 2.106 -3.567 -0.327 C12 V8C 14 V8C C13 C12 C 0 1 N N N N N N 34.237 41.679 46.209 4.253 -4.793 -0.291 C13 V8C 15 V8C C14 C13 C 0 1 N N N N N N 35.443 43.605 45.240 2.045 -6.037 -0.420 C14 V8C 16 V8C C15 C14 C 0 1 Y N N N N N 31.773 42.839 45.164 2.816 -2.377 -0.260 C15 V8C 17 V8C C16 C15 C 0 1 Y N N N N N 30.649 43.327 44.560 2.139 -1.166 -0.239 C16 V8C 18 V8C C17 C16 C 0 1 Y N N N N N 29.368 45.710 41.845 -1.466 0.153 -0.324 C17 V8C 19 V8C C18 C17 C 0 1 Y N N N N N 30.017 45.282 40.690 -2.112 0.529 -1.502 C18 V8C 20 V8C C19 C18 C 0 1 Y N N N N N 29.934 46.019 39.528 -3.489 0.569 -1.553 C19 V8C 21 V8C C20 C19 C 0 1 Y N N N N N 29.196 47.193 39.478 -4.247 0.234 -0.428 C20 V8C 22 V8C C21 C20 C 0 1 Y N N N N N 28.469 47.578 40.599 -3.615 -0.145 0.756 C21 V8C 23 V8C C22 C21 C 0 1 Y N N N N N 28.547 46.851 41.779 -2.226 -0.193 0.814 C22 V8C 24 V8C C23 C22 C 0 1 N N N N N N 27.819 47.379 42.999 -1.551 -0.592 2.063 C23 V8C 25 V8C C24 C23 C 0 1 N N N N N N 29.184 47.964 38.190 -5.724 0.280 -0.493 C24 V8C 26 V8C C8 C24 C 0 1 N N N N N N 29.435 44.758 43.005 0.007 0.111 -0.270 C8 V8C 27 V8C C9 C25 C 0 1 Y N N N N N 30.659 44.318 43.556 0.731 -1.166 -0.291 C9 V8C 28 V8C N1 N2 N 0 1 N N N N N N 34.192 42.890 45.410 2.789 -4.777 -0.346 N1 V8C 29 V8C N25 N3 N 0 1 N N N N N N 30.265 47.797 37.413 -6.337 0.646 -1.637 N25 V8C 30 V8C O2 O3 O 0 1 N N N N N N 27.038 48.346 42.857 -0.329 -0.634 2.112 O2 V8C 31 V8C O26 O4 O 0 1 N N N N N N 28.283 48.758 37.921 -6.385 -0.011 0.484 O26 V8C 32 V8C H1 H1 H 0 1 N N N N N N 23.816 41.330 46.644 4.999 4.574 -0.772 H1 V8C 33 V8C H2 H2 H 0 1 N N N N N N 25.405 40.736 46.055 4.862 5.492 0.747 H2 V8C 34 V8C H3 H3 H 0 1 N N N N N N 25.331 42.124 47.193 4.754 3.716 0.768 H3 V8C 35 V8C H4 H4 H 0 1 N N N N N N 27.282 41.956 45.884 4.049 2.273 -0.037 H4 V8C 36 V8C H5 H5 H 0 1 N N N N N N 26.839 45.302 42.281 -0.945 2.618 -0.211 H5 V8C 37 V8C H6 H6 H 0 1 N N N N N N 24.847 44.370 43.268 0.391 4.646 -0.077 H6 V8C 38 V8C H8 H8 H 0 1 N N N N N N 22.678 42.374 45.336 1.750 6.159 0.764 H8 V8C 39 V8C H9 H9 H 0 1 N N N N N N 23.296 43.990 44.854 3.172 6.792 -0.099 H9 V8C 40 V8C H10 H10 H 0 1 N N N N N N 23.345 42.625 43.687 1.833 6.055 -1.011 H10 V8C 41 V8C H11 H11 H 0 1 N N N N N N 32.015 45.600 42.471 -1.050 -2.375 -0.403 H11 V8C 42 V8C H12 H12 H 0 1 N N N N N N 34.031 44.768 43.498 0.168 -4.490 -0.435 H12 V8C 43 V8C H13 H13 H 0 1 N N N N N N 35.263 41.516 46.571 4.577 -4.835 0.749 H13 V8C 44 V8C H14 H14 H 0 1 N N N N N N 33.557 41.781 47.068 4.627 -5.668 -0.824 H14 V8C 45 V8C H15 H15 H 0 1 N N N N N N 33.925 40.822 45.594 4.644 -3.889 -0.758 H15 V8C 46 V8C H16 H16 H 0 1 N N N N N N 36.243 43.080 45.784 1.899 -6.312 -1.465 H16 V8C 47 V8C H17 H17 H 0 1 N N N N N N 35.696 43.651 44.171 2.607 -6.821 0.087 H17 V8C 48 V8C H18 H18 H 0 1 N N N N N N 35.339 44.626 45.637 1.075 -5.915 0.062 H18 V8C 49 V8C H19 H19 H 0 1 N N N N N N 31.692 42.058 45.906 3.895 -2.393 -0.220 H19 V8C 50 V8C H20 H20 H 0 1 N N N N N N 30.589 44.366 40.705 -1.533 0.789 -2.375 H20 V8C 51 V8C H21 H21 H 0 1 N N N N N N 30.451 45.678 38.643 -3.985 0.861 -2.467 H21 V8C 52 V8C H22 H22 H 0 1 N N N N N N 27.837 48.452 40.551 -4.203 -0.404 1.624 H22 V8C 53 V8C H23 H23 H 0 1 N N N N N N 30.364 48.331 36.573 -5.809 0.878 -2.417 H23 V8C 54 V8C H24 H24 H 0 1 N N N N N N 30.971 47.139 37.674 -7.306 0.677 -1.680 H24 V8C 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V8C N25 C24 SING N N 1 V8C O26 C24 DOUB N N 2 V8C C24 C20 SING N N 3 V8C C20 C19 DOUB Y N 4 V8C C20 C21 SING Y N 5 V8C C19 C18 SING Y N 6 V8C C21 C22 DOUB Y N 7 V8C C18 C17 DOUB Y N 8 V8C C22 C17 SING Y N 9 V8C C22 C23 SING N N 10 V8C C17 C8 SING N N 11 V8C O2 C23 DOUB N N 12 V8C C23 O1 SING N N 13 V8C C8 C5 DOUB N N 14 V8C C8 C9 SING N N 15 V8C C6 C5 SING N N 16 V8C C6 C7 DOUB N N 17 V8C C10 C9 SING Y N 18 V8C C10 C11 DOUB Y N 19 V8C C5 C4 SING N N 20 V8C C9 C16 DOUB Y N 21 V8C C7 C2 SING N N 22 V8C C11 C12 SING Y N 23 V8C C4 O SING N N 24 V8C C4 C3 DOUB N N 25 V8C C16 O SING N N 26 V8C C16 C15 SING Y N 27 V8C C2 C3 SING N N 28 V8C C2 N DOUB N N 29 V8C C N SING N N 30 V8C C12 C15 DOUB Y N 31 V8C C12 N1 SING N N 32 V8C N C1 SING N N 33 V8C C14 N1 SING N N 34 V8C N1 C13 SING N N 35 V8C C1 H1 SING N N 36 V8C C1 H2 SING N N 37 V8C C1 H3 SING N N 38 V8C C3 H4 SING N N 39 V8C C6 H5 SING N N 40 V8C C7 H6 SING N N 41 V8C C H8 SING N N 42 V8C C H9 SING N N 43 V8C C H10 SING N N 44 V8C C10 H11 SING N N 45 V8C C11 H12 SING N N 46 V8C C13 H13 SING N N 47 V8C C13 H14 SING N N 48 V8C C13 H15 SING N N 49 V8C C14 H16 SING N N 50 V8C C14 H17 SING N N 51 V8C C14 H18 SING N N 52 V8C C15 H19 SING N N 53 V8C C18 H20 SING N N 54 V8C C19 H21 SING N N 55 V8C C21 H22 SING N N 56 V8C N25 H23 SING N N 57 V8C N25 H24 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V8C InChI InChI 1.06 "InChI=1S/C25H23N3O4/c1-27(2)15-6-9-18-21(12-15)32-22-13-16(28(3)4)7-10-19(22)23(18)17-8-5-14(24(26)29)11-20(17)25(30)31/h5-13H,1-4H3,(H2-,26,29,30,31)" V8C InChIKey InChI 1.06 TZKHAYIVKGBSEZ-UHFFFAOYSA-N V8C SMILES_CANONICAL CACTVS 3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4ccc(cc4C([O-])=O)C(N)=O)=[N+](C)C)c1" V8C SMILES CACTVS 3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4ccc(cc4C([O-])=O)C(N)=O)=[N+](C)C)c1" V8C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4ccc(cc4C(=O)[O-])C(=O)N" V8C SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4ccc(cc4C(=O)[O-])C(=O)N" # _pdbx_chem_comp_identifier.comp_id V8C _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-aminocarbonyl-2-[3-(dimethylamino)-6-dimethylazaniumylidene-xanthen-9-yl]benzoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V8C "Create component" 2023-07-10 PDBJ V8C "Initial release" 2024-05-29 RCSB #