data_V8R # _chem_comp.id V8R _chem_comp.name "(5~{S},6~{R},7~{S},8~{S})-6,7,8-tris(oxidanyl)-2-[2-(3-phenoxyphenyl)ethyl]-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H22 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-10 _chem_comp.pdbx_modified_date 2023-09-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 410.420 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V8R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8JYG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V8R O30 O1 O 0 1 N N N -14.737 6.450 20.813 -2.973 -2.817 1.798 O30 V8R 1 V8R C25 C1 C 0 1 N N N -15.419 5.565 20.206 -3.847 -2.451 0.847 C25 V8R 2 V8R O29 O2 O 0 1 N N N -16.666 5.441 20.300 -4.236 -3.262 0.041 O29 V8R 3 V8R C6 C2 C 0 1 N N S -14.676 4.585 19.362 -4.342 -1.029 0.786 C6 V8R 4 V8R C1 C3 C 0 1 N N R -14.744 4.997 17.904 -5.317 -0.875 -0.387 C1 V8R 5 V8R O27 O3 O 0 1 N N N -13.967 6.193 17.817 -6.527 -1.579 -0.096 O27 V8R 6 V8R N5 N1 N 0 1 Y N N -15.179 3.197 19.532 -3.210 -0.123 0.583 N5 V8R 7 V8R C9 C4 C 0 1 Y N N -15.587 2.575 20.659 -1.990 -0.161 1.191 C9 V8R 8 V8R C8 C5 C 0 1 Y N N -15.955 1.296 20.323 -1.275 0.866 0.690 C8 V8R 9 V8R N7 N2 N 0 1 Y N N -15.757 1.140 19.003 -2.043 1.513 -0.201 N7 V8R 10 V8R C4 C6 C 0 1 Y N N -15.276 2.324 18.529 -3.203 0.928 -0.271 C4 V8R 11 V8R C3 C7 C 0 1 N N S -14.917 2.625 17.129 -4.376 1.316 -1.140 C3 V8R 12 V8R O28 O4 O 0 1 N N N -14.239 1.487 16.595 -4.563 2.732 -1.093 O28 V8R 13 V8R C2 C8 C 0 1 N N S -14.093 3.921 17.046 -5.629 0.609 -0.601 C2 V8R 14 V8R O26 O5 O 0 1 N N N -13.987 4.349 15.663 -6.698 0.741 -1.541 O26 V8R 15 V8R C10 C9 C 0 1 N N N -16.498 0.244 21.244 0.139 1.227 1.066 C10 V8R 16 V8R C11 C10 C 0 1 N N N -18.014 0.185 21.132 1.003 1.283 -0.196 C11 V8R 17 V8R C12 C11 C 0 1 Y N N -18.538 -0.791 22.176 2.418 1.643 0.180 C12 V8R 18 V8R C17 C12 C 0 1 Y N N -19.059 -2.033 21.872 2.803 2.970 0.229 C17 V8R 19 V8R C16 C13 C 0 1 Y N N -19.545 -2.856 22.900 4.099 3.304 0.574 C16 V8R 20 V8R C15 C14 C 0 1 Y N N -19.483 -2.454 24.229 5.014 2.312 0.869 C15 V8R 21 V8R C14 C15 C 0 1 Y N N -18.933 -1.214 24.520 4.631 0.979 0.820 C14 V8R 22 V8R C13 C16 C 0 1 Y N N -18.481 -0.405 23.509 3.327 0.647 0.480 C13 V8R 23 V8R O18 O6 O 0 1 N N N -18.811 -0.708 25.787 5.529 0.002 1.110 O18 V8R 24 V8R C19 C17 C 0 1 Y N N -19.765 -0.825 26.759 5.921 -0.822 0.104 C19 V8R 25 V8R C24 C18 C 0 1 Y N N -21.100 -1.085 26.462 5.512 -0.573 -1.198 C24 V8R 26 V8R C23 C19 C 0 1 Y N N -22.029 -1.207 27.499 5.913 -1.413 -2.220 C23 V8R 27 V8R C22 C20 C 0 1 Y N N -21.647 -1.056 28.824 6.720 -2.501 -1.945 C22 V8R 28 V8R C21 C21 C 0 1 Y N N -20.304 -0.775 29.118 7.129 -2.752 -0.648 C21 V8R 29 V8R C20 C22 C 0 1 Y N N -19.373 -0.656 28.077 6.737 -1.912 0.376 C20 V8R 30 V8R H4 H1 H 0 1 N N N -15.315 6.991 21.338 -2.683 -3.739 1.797 H4 V8R 31 V8R H6 H2 H 0 1 N N N -13.619 4.605 19.667 -4.849 -0.778 1.717 H6 V8R 32 V8R H1 H3 H 0 1 N N N -15.787 5.160 17.595 -4.867 -1.286 -1.290 H1 V8R 33 V8R HO27 H4 H 0 0 N N N -14.367 6.870 18.350 -7.191 -1.525 -0.796 HO27 V8R 34 V8R H9 H5 H 0 1 N N N -15.618 3.007 21.648 -1.661 -0.876 1.930 H9 V8R 35 V8R H3 H6 H 0 1 N N N -15.845 2.786 16.562 -4.191 1.005 -2.168 H3 V8R 36 V8R HO28 H7 H 0 0 N N N -14.795 0.721 16.674 -3.801 3.241 -1.402 HO28 V8R 37 V8R H2 H8 H 0 1 N N N -13.088 3.718 17.444 -5.920 1.060 0.348 H2 V8R 38 V8R HO26 H9 H 0 0 N N N -13.579 3.662 15.149 -6.948 1.656 -1.725 HO26 V8R 39 V8R H102 H10 H 0 0 N N N -16.074 -0.734 20.970 0.148 2.200 1.556 H102 V8R 40 V8R H101 H11 H 0 0 N N N -16.219 0.487 22.280 0.538 0.474 1.746 H101 V8R 41 V8R H111 H12 H 0 0 N N N -18.438 1.184 21.312 0.994 0.309 -0.686 H111 V8R 42 V8R H112 H13 H 0 0 N N N -18.299 -0.159 20.127 0.605 2.035 -0.876 H112 V8R 43 V8R H17 H14 H 0 1 N N N -19.092 -2.370 20.847 2.089 3.747 -0.002 H17 V8R 44 V8R H16 H15 H 0 1 N N N -19.974 -3.816 22.654 4.397 4.341 0.612 H16 V8R 45 V8R H15 H16 H 0 1 N N N -19.854 -3.092 25.017 6.027 2.573 1.138 H15 V8R 46 V8R H13 H17 H 0 1 N N N -18.068 0.562 23.757 3.025 -0.389 0.445 H13 V8R 47 V8R H24 H18 H 0 1 N N N -21.416 -1.192 25.435 4.881 0.276 -1.413 H24 V8R 48 V8R H23 H19 H 0 1 N N N -23.061 -1.422 27.265 5.595 -1.219 -3.233 H23 V8R 49 V8R H22 H20 H 0 1 N N N -22.373 -1.153 29.618 7.032 -3.156 -2.745 H22 V8R 50 V8R H21 H21 H 0 1 N N N -19.989 -0.651 30.143 7.760 -3.603 -0.436 H21 V8R 51 V8R H20 H22 H 0 1 N N N -18.341 -0.431 28.304 7.060 -2.106 1.388 H20 V8R 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V8R C1 C2 SING N N 1 V8R C1 C6 SING N N 2 V8R O27 C1 SING N N 3 V8R C2 C3 SING N N 4 V8R O26 C2 SING N N 5 V8R C3 C4 SING N N 6 V8R O28 C3 SING N N 7 V8R C4 N5 SING Y N 8 V8R C4 N7 DOUB Y N 9 V8R N5 C6 SING N N 10 V8R C9 N5 SING Y N 11 V8R C6 C25 SING N N 12 V8R N7 C8 SING Y N 13 V8R C8 C9 DOUB Y N 14 V8R C10 C8 SING N N 15 V8R C11 C10 SING N N 16 V8R C12 C11 SING N N 17 V8R C12 C13 DOUB Y N 18 V8R C17 C12 SING Y N 19 V8R C13 C14 SING Y N 20 V8R C14 C15 DOUB Y N 21 V8R O18 C14 SING N N 22 V8R C15 C16 SING Y N 23 V8R C16 C17 DOUB Y N 24 V8R C19 O18 SING N N 25 V8R C19 C20 DOUB Y N 26 V8R C24 C19 SING Y N 27 V8R C20 C21 SING Y N 28 V8R C21 C22 DOUB Y N 29 V8R C22 C23 SING Y N 30 V8R C23 C24 DOUB Y N 31 V8R O29 C25 DOUB N N 32 V8R C25 O30 SING N N 33 V8R O30 H4 SING N N 34 V8R C6 H6 SING N N 35 V8R C1 H1 SING N N 36 V8R O27 HO27 SING N N 37 V8R C9 H9 SING N N 38 V8R C3 H3 SING N N 39 V8R O28 HO28 SING N N 40 V8R C2 H2 SING N N 41 V8R O26 HO26 SING N N 42 V8R C10 H102 SING N N 43 V8R C10 H101 SING N N 44 V8R C11 H111 SING N N 45 V8R C11 H112 SING N N 46 V8R C17 H17 SING N N 47 V8R C16 H16 SING N N 48 V8R C15 H15 SING N N 49 V8R C13 H13 SING N N 50 V8R C24 H24 SING N N 51 V8R C23 H23 SING N N 52 V8R C22 H22 SING N N 53 V8R C21 H21 SING N N 54 V8R C20 H20 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V8R InChI InChI 1.06 "InChI=1S/C22H22N2O6/c25-18-17(22(28)29)24-12-14(23-21(24)20(27)19(18)26)10-9-13-5-4-8-16(11-13)30-15-6-2-1-3-7-15/h1-8,11-12,17-20,25-27H,9-10H2,(H,28,29)/t17-,18+,19-,20+/m0/s1" V8R InChIKey InChI 1.06 FCQUVPLCJSCNPK-ZGXWSNOMSA-N V8R SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@H](O)[C@H](n2cc(CCc3cccc(Oc4ccccc4)c3)nc2[C@@H]1O)C(O)=O" V8R SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](n2cc(CCc3cccc(Oc4ccccc4)c3)nc2[CH]1O)C(O)=O" V8R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Oc2cccc(c2)CCc3cn4c(n3)[C@@H]([C@H]([C@@H]([C@H]4C(=O)O)O)O)O" V8R SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Oc2cccc(c2)CCc3cn4c(n3)C(C(C(C4C(=O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id V8R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(5~{S},6~{R},7~{S},8~{S})-6,7,8-tris(oxidanyl)-2-[2-(3-phenoxyphenyl)ethyl]-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V8R "Create component" 2023-07-10 PDBJ V8R "Initial release" 2023-09-20 RCSB #