data_V8U
#
_chem_comp.id V8U
_chem_comp.name "3-[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-2-[[5-[(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H38 N4 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-02-27
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 586.678
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code V8U
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V8U O2A O1 O 0 1 N N N N N N ? ? ? -0.908 4.926 -0.457 O2A V8U 1
V8U C1A C1 C 0 1 Y N N N N N ? ? ? 1.009 0.317 0.373 C1A V8U 2
V8U C2A C2 C 0 1 Y N N N N N ? ? ? 1.228 1.372 -0.438 C2A V8U 3
V8U C3A C3 C 0 1 Y N N N N N ? ? ? 2.407 1.108 -1.163 C3A V8U 4
V8U C4A C4 C 0 1 Y N N N N N ? ? ? 2.863 -0.098 -0.768 C4A V8U 5
V8U C1B C5 C 0 1 N N N N N N ? ? ? 5.302 -0.297 -0.510 C1B V8U 6
V8U C2B C6 C 0 1 N N N N N N ? ? ? 6.629 -0.733 -0.729 C2B V8U 7
V8U C3B C7 C 0 1 N N N N N N ? ? ? 7.428 -0.067 0.157 C3B V8U 8
V8U C4B C8 C 0 1 N N N N N N ? ? ? 6.494 0.814 0.942 C4B V8U 9
V8U C1C C9 C 0 1 N N N N N N ? ? ? -6.804 -0.511 1.559 C1C V8U 10
V8U C2C C10 C 0 1 N N N N N N ? ? ? -7.788 -0.081 0.520 C2C V8U 11
V8U C3C C11 C 0 1 N N N N N N ? ? ? -7.078 0.101 -0.603 C3C V8U 12
V8U C4C C12 C 0 1 N N N N N N ? ? ? -5.670 -0.211 -0.270 C4C V8U 13
V8U C1D C13 C 0 1 Y N N N N N ? ? ? -3.243 -0.531 -0.518 C1D V8U 14
V8U C2D C14 C 0 1 Y N N N N N ? ? ? -2.792 -1.789 -0.337 C2D V8U 15
V8U C3D C15 C 0 1 Y N N N N N ? ? ? -1.579 -1.704 0.375 C3D V8U 16
V8U C4D C16 C 0 1 Y N N N N N ? ? ? -1.335 -0.397 0.602 C4D V8U 17
V8U O2D O2 O 0 1 N N N N N N ? ? ? 2.139 -4.778 -0.677 O2D V8U 18
V8U CGD C17 C 0 1 N N N N N N ? ? ? 1.170 -4.328 0.134 CGD V8U 19
V8U O1D O3 O 0 1 N N N N N N ? ? ? 0.990 -4.851 1.209 O1D V8U 20
V8U CBD C18 C 0 1 N N N N N N ? ? ? 0.304 -3.171 -0.295 CBD V8U 21
V8U CAD C19 C 0 1 N N N N N N ? ? ? -0.714 -2.861 0.804 CAD V8U 22
V8U CMD C20 C 0 1 N N N N N N ? ? ? -3.462 -3.054 -0.809 CMD V8U 23
V8U CHD C21 C 0 1 N N N N N N ? ? ? -4.512 -0.142 -1.232 CHD V8U 24
V8U CAC C22 C 0 1 N N N N N N ? ? ? -7.610 0.537 -1.944 CAC V8U 25
V8U CBC C23 C 0 1 N N N N N N ? ? ? -7.456 2.053 -2.085 CBC V8U 26
V8U CMC C24 C 0 1 N N N N N N ? ? ? -9.273 0.108 0.697 CMC V8U 27
V8U OC O4 O 0 1 N N N N N N ? ? ? -7.055 -0.778 2.711 OC V8U 28
V8U NC N1 N 0 1 N N N N N N ? ? ? -5.589 -0.553 0.983 NC V8U 29
V8U ND N2 N 0 1 Y N N N N N ? ? ? -2.356 0.327 0.061 ND V8U 30
V8U CHA C25 C 0 1 N N N N N N ? ? ? -0.143 0.165 1.333 CHA V8U 31
V8U CAA C26 C 0 1 N N N N N N ? ? ? 0.370 2.605 -0.549 CAA V8U 32
V8U CBA C27 C 0 1 N N N N N N ? ? ? 0.858 3.657 0.450 CBA V8U 33
V8U CGA C28 C 0 1 N N N N N N ? ? ? 0.000 4.891 0.339 CGA V8U 34
V8U O1A O5 O 0 1 N N N N N N ? ? ? 0.245 5.952 1.124 O1A V8U 35
V8U CMA C29 C 0 1 N N N N N N ? ? ? 3.042 2.008 -2.192 CMA V8U 36
V8U NA N3 N 0 1 Y N N N N N ? ? ? 2.006 -0.591 0.171 NA V8U 37
V8U CHB C30 C 0 1 N N N N N N ? ? ? 4.103 -0.785 -1.280 CHB V8U 38
V8U CMB C31 C 0 1 N N N N N N ? ? ? 7.079 -1.744 -1.752 CMB V8U 39
V8U CAB C32 C 0 1 N N N N N N ? ? ? 8.833 -0.179 0.303 CAB V8U 40
V8U CBB C33 C 0 1 N N N N N N ? ? ? 9.473 0.556 1.227 CBB V8U 41
V8U OB O6 O 0 1 N N N N N N ? ? ? 6.795 1.575 1.836 OB V8U 42
V8U NB N4 N 0 1 N N N N N N ? ? ? 5.257 0.587 0.458 NB V8U 43
V8U H1 H1 H 0 1 N N N N N N ? ? ? 2.668 -5.522 -0.359 H1 V8U 44
V8U H2 H2 H 0 1 N N N N N N ? ? ? 0.929 -2.296 -0.470 H2 V8U 45
V8U H3 H3 H 0 1 N N N N N N ? ? ? -0.221 -3.432 -1.214 H3 V8U 46
V8U H4 H4 H 0 1 N N N N N N ? ? ? -0.188 -2.600 1.723 H4 V8U 47
V8U H5 H5 H 0 1 N N N N N N ? ? ? -1.339 -3.737 0.979 H5 V8U 48
V8U H6 H6 H 0 1 N N N N N N ? ? ? -3.108 -3.301 -1.810 H6 V8U 49
V8U H7 H7 H 0 1 N N N N N N ? ? ? -3.222 -3.869 -0.126 H7 V8U 50
V8U H8 H8 H 0 1 N N N N N N ? ? ? -4.542 -2.905 -0.833 H8 V8U 51
V8U H9 H9 H 0 1 N N N N N N ? ? ? -4.687 -0.827 -2.061 H9 V8U 52
V8U H10 H10 H 0 1 N N N N N N ? ? ? -4.417 0.875 -1.613 H10 V8U 53
V8U H11 H11 H 0 1 N N N N N N ? ? ? -7.051 0.040 -2.736 H11 V8U 54
V8U H12 H12 H 0 1 N N N N N N ? ? ? -8.664 0.271 -2.021 H12 V8U 55
V8U H13 H13 H 0 1 N N N N N N ? ? ? -7.840 2.369 -3.055 H13 V8U 56
V8U H14 H14 H 0 1 N N N N N N ? ? ? -8.015 2.551 -1.293 H14 V8U 57
V8U H15 H15 H 0 1 N N N N N N ? ? ? -6.401 2.319 -2.008 H15 V8U 58
V8U H16 H16 H 0 1 N N N N N N ? ? ? -9.548 -0.118 1.727 H16 V8U 59
V8U H17 H17 H 0 1 N N N N N N ? ? ? -9.537 1.141 0.469 H17 V8U 60
V8U H18 H18 H 0 1 N N N N N N ? ? ? -9.808 -0.561 0.023 H18 V8U 61
V8U H19 H19 H 0 1 N N N N N N ? ? ? -2.435 1.294 0.080 H19 V8U 62
V8U H20 H20 H 0 1 N N N N N N ? ? ? 0.142 -0.512 2.138 H20 V8U 63
V8U H21 H21 H 0 1 N N N N N N ? ? ? -0.399 1.139 1.750 H21 V8U 64
V8U H22 H22 H 0 1 N N N N N N ? ? ? 0.438 3.006 -1.560 H22 V8U 65
V8U H23 H23 H 0 1 N N N N N N ? ? ? -0.666 2.348 -0.328 H23 V8U 66
V8U H24 H24 H 0 1 N N N N N N ? ? ? 0.791 3.257 1.461 H24 V8U 67
V8U H25 H25 H 0 1 N N N N N N ? ? ? 1.894 3.914 0.229 H25 V8U 68
V8U H26 H26 H 0 1 N N N N N N ? ? ? -0.332 6.720 1.017 H26 V8U 69
V8U H27 H27 H 0 1 N N N N N N ? ? ? 3.750 2.677 -1.702 H27 V8U 70
V8U H28 H28 H 0 1 N N N N N N ? ? ? 3.566 1.402 -2.931 H28 V8U 71
V8U H29 H29 H 0 1 N N N N N N ? ? ? 2.269 2.595 -2.687 H29 V8U 72
V8U H30 H30 H 0 1 N N N N N N ? ? ? 2.094 -1.444 0.625 H30 V8U 73
V8U H31 H31 H 0 1 N N N N N N ? ? ? 4.001 -1.863 -1.149 H31 V8U 74
V8U H32 H32 H 0 1 N N N N N N ? ? ? 4.233 -0.559 -2.338 H32 V8U 75
V8U H33 H33 H 0 1 N N N N N N ? ? ? 7.321 -1.235 -2.685 H33 V8U 76
V8U H34 H34 H 0 1 N N N N N N ? ? ? 7.962 -2.266 -1.383 H34 V8U 77
V8U H35 H35 H 0 1 N N N N N N ? ? ? 6.279 -2.464 -1.927 H35 V8U 78
V8U H36 H36 H 0 1 N N N N N N ? ? ? 9.390 -0.855 -0.329 H36 V8U 79
V8U H37 H37 H 0 1 N N N N N N ? ? ? 10.544 0.470 1.338 H37 V8U 80
V8U H38 H38 H 0 1 N N N N N N ? ? ? 8.917 1.232 1.859 H38 V8U 81
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V8U CBB CAB DOUB N N 1
V8U CAB C3B SING N N 2
V8U OB C4B DOUB N N 3
V8U C3B C4B SING N N 4
V8U C3B C2B DOUB N N 5
V8U C4B NB SING N N 6
V8U CMB C2B SING N N 7
V8U C2B C1B SING N N 8
V8U NB C1B DOUB N N 9
V8U C1B CHB SING N N 10
V8U CHB C4A SING N N 11
V8U CMA C3A SING N N 12
V8U OC C1C DOUB N N 13
V8U C4A C3A DOUB Y N 14
V8U C4A NA SING Y N 15
V8U C3A C2A SING Y N 16
V8U O2A CGA DOUB N N 17
V8U O1A CGA SING N N 18
V8U C1C C2C SING N N 19
V8U C1C NC SING N N 20
V8U NA C1A SING Y N 21
V8U CMC C2C SING N N 22
V8U CGA CBA SING N N 23
V8U C2C C3C DOUB N N 24
V8U C2A C1A DOUB Y N 25
V8U C2A CAA SING N N 26
V8U NC C4C DOUB N N 27
V8U C1A CHA SING N N 28
V8U CBA CAA SING N N 29
V8U C4C C3C SING N N 30
V8U C4C CHD SING N N 31
V8U C3C CAC SING N N 32
V8U ND C4D SING Y N 33
V8U ND C1D SING Y N 34
V8U CHA C4D SING N N 35
V8U C4D C3D DOUB Y N 36
V8U CAC CBC SING N N 37
V8U CHD C1D SING N N 38
V8U C1D C2D DOUB Y N 39
V8U C3D C2D SING Y N 40
V8U C3D CAD SING N N 41
V8U C2D CMD SING N N 42
V8U CBD CAD SING N N 43
V8U CBD CGD SING N N 44
V8U CGD O1D DOUB N N 45
V8U CGD O2D SING N N 46
V8U O2D H1 SING N N 47
V8U CBD H2 SING N N 48
V8U CBD H3 SING N N 49
V8U CAD H4 SING N N 50
V8U CAD H5 SING N N 51
V8U CMD H6 SING N N 52
V8U CMD H7 SING N N 53
V8U CMD H8 SING N N 54
V8U CHD H9 SING N N 55
V8U CHD H10 SING N N 56
V8U CAC H11 SING N N 57
V8U CAC H12 SING N N 58
V8U CBC H13 SING N N 59
V8U CBC H14 SING N N 60
V8U CBC H15 SING N N 61
V8U CMC H16 SING N N 62
V8U CMC H17 SING N N 63
V8U CMC H18 SING N N 64
V8U ND H19 SING N N 65
V8U CHA H20 SING N N 66
V8U CHA H21 SING N N 67
V8U CAA H22 SING N N 68
V8U CAA H23 SING N N 69
V8U CBA H24 SING N N 70
V8U CBA H25 SING N N 71
V8U O1A H26 SING N N 72
V8U CMA H27 SING N N 73
V8U CMA H28 SING N N 74
V8U CMA H29 SING N N 75
V8U NA H30 SING N N 76
V8U CHB H31 SING N N 77
V8U CHB H32 SING N N 78
V8U CMB H33 SING N N 79
V8U CMB H34 SING N N 80
V8U CMB H35 SING N N 81
V8U CAB H36 SING N N 82
V8U CBB H37 SING N N 83
V8U CBB H38 SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V8U InChI InChI 1.06 "InChI=1S/C33H38N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h8,34-35H,2,7,9-15H2,1,3-6H3,(H,38,39)(H,40,41)"
V8U InChIKey InChI 1.06 UETWWFBMDBJSDH-UHFFFAOYSA-N
V8U SMILES_CANONICAL CACTVS 3.385 "CCC1=C(C)C(=O)N=C1Cc2[nH]c(Cc3[nH]c(CC4=NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C"
V8U SMILES CACTVS 3.385 "CCC1=C(C)C(=O)N=C1Cc2[nH]c(Cc3[nH]c(CC4=NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C"
V8U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC1=C(C(=O)N=C1Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)CC4=NC(=O)C(=C4C)C=C)C)CCC(=O)O)CCC(=O)O)C)C"
V8U SMILES "OpenEye OEToolkits" 2.0.7 "CCC1=C(C(=O)N=C1Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)CC4=NC(=O)C(=C4C)C=C)C)CCC(=O)O)CCC(=O)O)C)C"
#
_pdbx_chem_comp_identifier.comp_id V8U
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "3-[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-2-[[5-[(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V8U "Create component" 2023-02-27 PDBE
V8U "Initial release" 2024-02-28 RCSB
V8U "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id V8U
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom CBC
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#