data_V8X # _chem_comp.id V8X _chem_comp.name "N-[(2S)-3-cyclopropyl-1-({(1E,2R)-1-imino-3-[(3R)-2-oxo-2,3-dihydropyridin-3-yl]propan-2-yl}amino)-1-oxopropan-2-yl]-5,7-difluoro-1H-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H23 F2 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-11 _chem_comp.pdbx_modified_date 2025-03-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 455.457 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V8X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8U40 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V8X C14 C1 C 0 1 Y N N N N N 15.549 15.723 -43.212 3.893 -1.041 1.058 C14 V8X 1 V8X C10 C2 C 0 1 N N N N N N 12.473 11.232 -45.337 -1.615 4.089 1.659 C10 V8X 2 V8X C12 C3 C 0 1 N N N N N N 13.599 14.257 -42.262 1.471 -0.370 1.163 C12 V8X 3 V8X C13 C4 C 0 1 Y N N N N N 14.311 15.575 -42.565 2.844 -0.283 0.643 C13 V8X 4 V8X C15 C5 C 0 1 Y N N N N N 15.755 17.140 -43.318 5.032 -0.645 0.316 C15 V8X 5 V8X C16 C6 C 0 1 Y N N N N N 16.787 17.969 -43.837 6.370 -1.065 0.310 C16 V8X 6 V8X C17 C7 C 0 1 Y N N N N N 16.627 19.360 -43.760 7.262 -0.479 -0.542 C17 V8X 7 V8X F18 F1 F 0 1 N N N N N N 17.592 20.167 -44.266 8.550 -0.886 -0.546 F18 V8X 8 V8X C02 C8 C 0 1 N N N N N N 11.826 9.237 -39.297 -3.152 -3.546 0.401 C02 V8X 9 V8X C03 C9 C 0 1 N N R N N N 11.860 10.798 -39.224 -3.454 -2.214 -0.236 C03 V8X 10 V8X C05 C10 C 0 1 N N N N N N 13.660 11.425 -41.152 -1.531 -0.820 0.309 C05 V8X 11 V8X C06 C11 C 0 1 N N S N N N 13.641 11.802 -42.642 -0.877 0.278 1.107 C06 V8X 12 V8X C07 C12 C 0 1 N N N N N N 14.411 10.787 -43.526 -1.635 1.589 0.888 C07 V8X 13 V8X C08 C13 C 0 1 N N N N N N 13.561 10.305 -44.756 -1.060 2.670 1.805 C08 V8X 14 V8X C09 C14 C 0 1 N N N N N N 13.831 11.101 -46.030 -1.980 3.247 2.883 C09 V8X 15 V8X C19 C15 C 0 1 Y N N N N N 15.490 19.953 -43.189 6.857 0.534 -1.405 C19 V8X 16 V8X C20 C16 C 0 1 Y N N N N N 14.485 19.141 -42.672 5.547 0.964 -1.416 C20 V8X 17 V8X C22 C17 C 0 1 Y N N N N N 14.641 17.726 -42.744 4.619 0.380 -0.556 C22 V8X 18 V8X C26 C18 C 0 1 N N N N N N 12.781 11.572 -38.324 -4.967 -1.992 -0.264 C26 V8X 19 V8X C27 C19 C 0 1 N N N N N N 12.191 12.851 -37.634 -5.275 -0.720 -1.010 C27 V8X 20 V8X C28 C20 C 0 1 N N N N N N 13.220 13.539 -36.979 -5.584 -0.765 -2.309 C28 V8X 21 V8X C29 C21 C 0 1 N N N N N N 12.950 14.692 -36.263 -5.884 0.548 -3.001 C29 V8X 22 V8X C30 C22 C 0 1 N N N N N N 11.649 15.146 -36.197 -5.811 1.811 -2.172 C30 V8X 23 V8X C32 C23 C 0 1 N N N N N N 10.859 13.393 -37.524 -5.241 0.569 -0.308 C32 V8X 24 V8X F21 F2 F 0 1 N N N N N N 13.332 19.649 -42.103 5.164 1.949 -2.258 F21 V8X 25 V8X N01 N1 N 0 1 N N N N N N 12.079 8.572 -38.254 -2.436 -3.601 1.460 N01 V8X 26 V8X N04 N2 N 0 1 N N N N N N 12.280 11.232 -40.582 -2.818 -1.146 0.540 N04 V8X 27 V8X N11 N3 N 0 1 N N N N N N 14.243 13.092 -42.838 0.512 0.439 0.670 N11 V8X 28 V8X N23 N4 N 0 1 Y N N N N N 13.792 16.754 -42.307 3.274 0.583 -0.343 N23 V8X 29 V8X N31 N5 N 0 1 N N N N N N 10.666 14.509 -36.812 -5.500 1.732 -0.919 N31 V8X 30 V8X O24 O1 O 0 1 N N N N N N 12.539 14.194 -41.700 1.202 -1.172 2.037 O24 V8X 31 V8X O25 O2 O 0 1 N N N N N N 14.717 11.330 -40.566 -0.899 -1.411 -0.541 O25 V8X 32 V8X O33 O3 O 0 1 N N N N N N 9.851 12.967 -38.003 -4.961 0.581 0.876 O33 V8X 33 V8X H141 H1 H 0 0 N N N N N N 16.206 14.938 -43.556 3.864 -1.806 1.819 H141 V8X 34 V8X H102 H2 H 0 0 N N N N N N 12.207 12.164 -44.817 -0.922 4.918 1.807 H102 V8X 35 V8X H101 H3 H 0 0 N N N N N N 11.573 10.802 -45.802 -2.389 4.251 0.910 H101 V8X 36 V8X H161 H4 H 0 0 N N N N N N 17.673 17.538 -44.280 6.694 -1.851 0.976 H161 V8X 37 V8X H1 H5 H 0 1 N N N N N N 11.590 8.736 -40.224 -3.541 -4.454 -0.036 H1 V8X 38 V8X H031 H6 H 0 0 N N N N N N 10.831 11.145 -39.048 -3.066 -2.203 -1.255 H031 V8X 39 V8X H061 H7 H 0 0 N N N N N N 12.594 11.827 -42.980 -0.897 0.019 2.166 H061 V8X 40 V8X H072 H8 H 0 0 N N N N N N 14.675 9.912 -42.913 -1.531 1.900 -0.151 H072 V8X 41 V8X H071 H9 H 0 0 N N N N N N 15.330 11.266 -43.896 -2.690 1.441 1.119 H071 V8X 42 V8X H081 H10 H 0 0 N N N N N N 13.405 9.221 -44.856 -0.002 2.566 2.049 H081 V8X 43 V8X H092 H11 H 0 0 N N N N N N 13.905 10.581 -46.996 -1.529 3.521 3.836 H092 V8X 44 V8X H091 H12 H 0 0 N N N N N N 14.540 11.942 -46.011 -2.996 2.855 2.939 H091 V8X 45 V8X H191 H13 H 0 0 N N N N N N 15.396 21.028 -43.151 7.575 0.988 -2.072 H191 V8X 46 V8X H262 H14 H 0 0 N N N N N N 13.118 10.891 -37.529 -5.448 -2.833 -0.765 H262 V8X 47 V8X H261 H15 H 0 0 N N N N N N 13.645 11.888 -38.926 -5.342 -1.915 0.757 H261 V8X 48 V8X H281 H17 H 0 0 N N N N N N 14.232 13.167 -37.033 -5.619 -1.702 -2.844 H281 V8X 49 V8X H291 H18 H 0 0 N N N N N N 13.283 14.516 -35.230 -5.186 0.654 -3.832 H291 V8X 50 V8X H301 H19 H 0 0 N N N N N N 11.428 16.040 -35.632 -6.016 2.770 -2.623 H301 V8X 51 V8X H011 H20 H 0 0 N N N N N N 12.029 7.587 -38.417 -2.242 -4.458 1.870 H011 V8X 52 V8X H041 H21 H 0 0 N N N N N N 11.530 11.426 -41.215 -3.323 -0.674 1.220 H041 V8X 53 V8X H111 H22 H 0 0 N N N N N N 15.090 13.185 -43.362 0.742 1.127 0.027 H111 V8X 54 V8X H3 H23 H 0 1 N N N N N N 12.912 16.913 -41.860 2.720 1.231 -0.806 H3 V8X 55 V8X H2 H24 H 0 1 N N N N N N 13.551 15.498 -36.710 -6.888 0.483 -3.421 H2 V8X 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V8X C09 C10 SING N N 1 V8X C09 C08 SING N N 2 V8X C10 C08 SING N N 3 V8X C08 C07 SING N N 4 V8X F18 C17 SING N N 5 V8X C16 C17 DOUB Y N 6 V8X C16 C15 SING Y N 7 V8X C17 C19 SING Y N 8 V8X C07 C06 SING N N 9 V8X C15 C14 SING Y N 10 V8X C15 C22 DOUB Y N 11 V8X C14 C13 DOUB Y N 12 V8X C19 C20 DOUB Y N 13 V8X N11 C06 SING N N 14 V8X N11 C12 SING N N 15 V8X C22 C20 SING Y N 16 V8X C22 N23 SING Y N 17 V8X C20 F21 SING N N 18 V8X C06 C05 SING N N 19 V8X C13 N23 SING Y N 20 V8X C13 C12 SING N N 21 V8X C12 O24 DOUB N N 22 V8X C05 N04 SING N N 23 V8X C05 O25 DOUB N N 24 V8X N04 C03 SING N N 25 V8X C02 C03 SING N N 26 V8X C02 N01 DOUB N N 27 V8X C03 C26 SING N N 28 V8X C26 C27 SING N N 29 V8X O33 C32 DOUB N N 30 V8X C27 C32 SING N N 31 V8X C27 C28 DOUB N N 32 V8X C32 N31 SING N N 33 V8X C28 C29 SING N N 34 V8X N31 C30 DOUB N N 35 V8X C29 C30 SING N N 36 V8X C14 H141 SING N N 37 V8X C10 H102 SING N N 38 V8X C10 H101 SING N N 39 V8X C16 H161 SING N N 40 V8X C02 H1 SING N N 41 V8X C03 H031 SING N N 42 V8X C06 H061 SING N N 43 V8X C07 H072 SING N N 44 V8X C07 H071 SING N N 45 V8X C08 H081 SING N N 46 V8X C09 H092 SING N N 47 V8X C09 H091 SING N N 48 V8X C19 H191 SING N N 49 V8X C26 H262 SING N N 50 V8X C26 H261 SING N N 51 V8X C28 H281 SING N N 52 V8X C29 H291 SING N N 53 V8X C30 H301 SING N N 54 V8X N01 H011 SING N N 55 V8X N04 H041 SING N N 56 V8X N11 H111 SING N N 57 V8X N23 H3 SING N N 58 V8X C29 H2 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V8X SMILES ACDLabs 12.01 "O=C1N=CCC=C1CC(C=N)NC(=O)C(CC1CC1)NC(=O)c1cc2cc(F)cc(F)c2[NH]1" V8X InChI InChI 1.06 "InChI=1S/C23H23F2N5O3/c24-15-7-14-9-19(29-20(14)17(25)10-15)23(33)30-18(6-12-3-4-12)22(32)28-16(11-26)8-13-2-1-5-27-21(13)31/h2,5,7,9-12,16,18,26,29H,1,3-4,6,8H2,(H,28,32)(H,30,33)/b26-11+/t16-,18+/m1/s1" V8X InChIKey InChI 1.06 BPEXUOKHFCNFEQ-JVXBGGSJSA-N V8X SMILES_CANONICAL CACTVS 3.385 "Fc1cc(F)c2[nH]c(cc2c1)C(=O)N[C@@H](CC3CC3)C(=O)N[C@H](CC4=CCC=NC4=O)C=N" V8X SMILES CACTVS 3.385 "Fc1cc(F)c2[nH]c(cc2c1)C(=O)N[CH](CC3CC3)C(=O)N[CH](CC4=CCC=NC4=O)C=N" V8X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/[C@@H](CC1=CCC=NC1=O)NC(=O)[C@H](CC2CC2)NC(=O)c3cc4cc(cc(c4[nH]3)F)F" V8X SMILES "OpenEye OEToolkits" 2.0.7 "c1c2cc([nH]c2c(cc1F)F)C(=O)NC(CC3CC3)C(=O)NC(CC4=CCC=NC4=O)C=N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V8X "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2S)-3-cyclopropyl-1-{[(1E,2R)-1-imino-3-(2-oxo-2,5-dihydropyridin-3-yl)propan-2-yl]amino}-1-oxopropan-2-yl]-5,7-difluoro-1H-indole-2-carboxamide" V8X "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-[[(2~{R})-1-azanylidene-3-(6-oxidanylidene-3~{H}-pyridin-5-yl)propan-2-yl]amino]-3-cyclopropyl-1-oxidanylidene-propan-2-yl]-5,7-bis(fluoranyl)-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V8X "Create component" 2023-09-11 RCSB V8X "Modify PCM" 2024-09-27 PDBE V8X "Initial release" 2025-03-12 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id V8X _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C02 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #