data_V95
#
_chem_comp.id V95
_chem_comp.name "methyl N-(6-benzoyl-1H-benzimidazol-2-yl)carbamate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H13 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Mebendazole; 4030"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-04-30
_chem_comp.pdbx_modified_date 2022-04-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 295.293
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code V95
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7ODN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V95 C11 C1 C 0 1 Y N N 16.586 10.928 27.119 0.755 -0.370 0.322 C11 V95 1
V95 C12 C2 C 0 1 Y N N 16.317 11.565 25.912 1.746 -1.340 0.148 C12 V95 2
V95 C01 C3 C 0 1 N N N 17.431 10.251 34.678 -6.186 2.378 0.391 C01 V95 3
V95 C03 C4 C 0 1 N N N 16.797 11.227 32.615 -4.508 0.709 0.080 C03 V95 4
V95 C06 C5 C 0 1 Y N N 16.348 12.349 30.414 -2.754 -0.853 -0.192 C06 V95 5
V95 C08 C6 C 0 1 Y N N 16.034 12.939 28.335 -0.908 -1.997 -0.333 C08 V95 6
V95 C09 C7 C 0 1 Y N N 16.436 11.636 28.348 -0.566 -0.696 0.086 C09 V95 7
V95 C13 C8 C 0 1 Y N N 15.901 12.899 25.906 1.398 -2.635 -0.263 C13 V95 8
V95 C14 C9 C 0 1 Y N N 15.760 13.591 27.102 0.097 -2.959 -0.497 C14 V95 9
V95 C15 C10 C 0 1 N N N 16.476 10.791 24.600 3.159 -1.001 0.397 C15 V95 10
V95 C17 C11 C 0 1 Y N N 16.746 11.501 23.267 3.657 0.357 0.094 C17 V95 11
V95 C18 C12 C 0 1 Y N N 16.236 10.957 22.095 4.948 0.731 0.473 C18 V95 12
V95 C19 C13 C 0 1 Y N N 16.465 11.575 20.877 5.407 2.000 0.186 C19 V95 13
V95 C20 C14 C 0 1 Y N N 17.211 12.742 20.824 4.592 2.901 -0.475 C20 V95 14
V95 C21 C15 C 0 1 Y N N 17.722 13.290 21.992 3.312 2.537 -0.854 C21 V95 15
V95 C22 C16 C 0 1 Y N N 17.492 12.670 23.213 2.842 1.270 -0.579 C22 V95 16
V95 N05 N1 N 0 1 N N N 16.412 12.398 31.861 -4.098 -0.534 -0.242 N05 V95 17
V95 N07 N2 N 0 1 Y N N 15.984 13.361 29.625 -2.248 -2.026 -0.484 N07 V95 18
V95 N10 N3 N 0 1 Y N N 16.622 11.293 29.648 -1.758 0.007 0.166 N10 V95 19
V95 O02 O1 O 0 1 N N N 16.822 11.311 34.009 -5.817 1.020 0.032 O02 V95 20
V95 O04 O2 O 0 1 N N N 17.070 10.222 32.046 -3.696 1.549 0.412 O04 V95 21
V95 O16 O3 O 0 1 N N N 16.387 9.612 24.617 3.914 -1.839 0.852 O16 V95 22
V95 H111 H1 H 0 0 N N N 16.908 9.897 27.125 1.020 0.626 0.642 H111 V95 23
V95 H012 H2 H 0 0 N N N 17.389 10.429 35.763 -7.266 2.494 0.310 H012 V95 24
V95 H011 H3 H 0 0 N N N 16.904 9.316 34.440 -5.874 2.580 1.416 H011 V95 25
V95 H013 H4 H 0 0 N N N 18.481 10.171 34.360 -5.693 3.079 -0.283 H013 V95 26
V95 H131 H5 H 0 0 N N N 15.689 13.393 24.969 2.169 -3.380 -0.396 H131 V95 27
V95 H141 H6 H 0 0 N N N 15.443 14.623 27.095 -0.161 -3.959 -0.814 H141 V95 28
V95 H181 H7 H 0 0 N N N 15.657 10.046 22.134 5.585 0.028 0.990 H181 V95 29
V95 H191 H8 H 0 0 N N N 16.063 11.148 19.970 6.405 2.290 0.480 H191 V95 30
V95 H201 H9 H 0 0 N N N 17.394 13.224 19.875 4.957 3.893 -0.697 H201 V95 31
V95 H211 H10 H 0 0 N N N 18.300 14.201 21.951 2.681 3.246 -1.369 H211 V95 32
V95 H221 H11 H 0 0 N N N 17.893 13.097 24.120 1.843 0.987 -0.875 H221 V95 33
V95 H051 H12 H 0 0 N N N 16.189 13.247 32.340 -4.747 -1.205 -0.507 H051 V95 34
V95 H101 H14 H 0 0 N N N 16.916 10.396 29.977 -1.863 0.935 0.427 H101 V95 35
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V95 C20 C19 DOUB Y N 1
V95 C20 C21 SING Y N 2
V95 C19 C18 SING Y N 3
V95 C21 C22 DOUB Y N 4
V95 C18 C17 DOUB Y N 5
V95 C22 C17 SING Y N 6
V95 C17 C15 SING N N 7
V95 C15 O16 DOUB N N 8
V95 C15 C12 SING N N 9
V95 C13 C12 DOUB Y N 10
V95 C13 C14 SING Y N 11
V95 C12 C11 SING Y N 12
V95 C14 C08 DOUB Y N 13
V95 C11 C09 DOUB Y N 14
V95 C08 C09 SING Y N 15
V95 C08 N07 SING Y N 16
V95 C09 N10 SING Y N 17
V95 N07 C06 DOUB Y N 18
V95 N10 C06 SING Y N 19
V95 C06 N05 SING N N 20
V95 N05 C03 SING N N 21
V95 O04 C03 DOUB N N 22
V95 C03 O02 SING N N 23
V95 O02 C01 SING N N 24
V95 C11 H111 SING N N 25
V95 C01 H012 SING N N 26
V95 C01 H011 SING N N 27
V95 C01 H013 SING N N 28
V95 C13 H131 SING N N 29
V95 C14 H141 SING N N 30
V95 C18 H181 SING N N 31
V95 C19 H191 SING N N 32
V95 C20 H201 SING N N 33
V95 C21 H211 SING N N 34
V95 C22 H221 SING N N 35
V95 N05 H051 SING N N 36
V95 N10 H101 SING N N 37
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V95 InChI InChI 1.03 "InChI=1S/C16H13N3O3/c1-22-16(21)19-15-17-12-8-7-11(9-13(12)18-15)14(20)10-5-3-2-4-6-10/h2-9H,1H3,(H2,17,18,19,21)"
V95 InChIKey InChI 1.03 OPXLLQIJSORQAM-UHFFFAOYSA-N
V95 SMILES_CANONICAL CACTVS 3.385 "COC(=O)Nc1[nH]c2cc(ccc2n1)C(=O)c3ccccc3"
V95 SMILES CACTVS 3.385 "COC(=O)Nc1[nH]c2cc(ccc2n1)C(=O)c3ccccc3"
V95 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)Nc1[nH]c2cc(ccc2n1)C(=O)c3ccccc3"
V95 SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)Nc1[nH]c2cc(ccc2n1)C(=O)c3ccccc3"
#
_pdbx_chem_comp_identifier.comp_id V95
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "methyl ~{N}-[6-(phenylcarbonyl)-1~{H}-benzimidazol-2-yl]carbamate"
# #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 V95 Mebendazole PUBCHEM ?
2 V95 4030 PUBCHEM ?
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V95 "Create component" 2021-04-30 PDBE
V95 "Initial release" 2022-04-06 RCSB
##