data_V9A # _chem_comp.id V9A _chem_comp.name "N-{5-[4-(2-amino-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]furan-2-carbonyl}-L-glutamic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 N4 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-20 _chem_comp.pdbx_modified_date 2021-03-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 462.476 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V9A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JG3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V9A O25 O1 O 0 1 N N N -30.458 9.461 37.800 6.907 -3.823 2.385 O25 V9A 1 V9A C26 C1 C 0 1 N N N -26.960 6.276 33.877 6.560 0.479 -2.069 C26 V9A 2 V9A C30 C2 C 0 1 N N N -28.422 13.888 29.108 -3.103 0.963 -0.879 C30 V9A 3 V9A C32 C3 C 0 1 N N N -26.799 13.446 30.925 -0.884 1.379 0.192 C32 V9A 4 V9A C31 C4 C 0 1 N N N -27.808 14.443 30.383 -2.273 0.771 0.392 C31 V9A 5 V9A C33 C5 C 0 1 N N N -27.026 13.272 32.408 -0.054 1.186 1.463 C33 V9A 6 V9A C20 C6 C 0 1 N N S -26.997 7.269 35.035 6.420 0.091 -0.620 C20 V9A 7 V9A C16 C7 C 0 1 Y N N -25.991 12.357 33.036 1.314 1.785 1.266 C16 V9A 8 V9A C17 C8 C 0 1 N N N -25.382 9.179 34.557 4.789 1.660 0.284 C17 V9A 9 V9A C22 C9 C 0 1 N N N -28.607 8.414 36.639 6.643 -1.786 1.015 C22 V9A 10 V9A C21 C10 C 0 1 N N N -28.405 7.283 35.627 6.662 -1.413 -0.469 C21 V9A 11 V9A C13 C11 C 0 1 Y N N -25.264 10.578 33.974 3.437 1.986 0.749 C13 V9A 12 V9A C8 C12 C 0 1 Y N N -25.425 12.543 27.069 -6.729 0.242 -0.099 C8 V9A 13 V9A C9 C13 C 0 1 Y N N -26.032 11.287 27.071 -6.551 -1.069 -0.535 C9 V9A 14 V9A C4 C14 C 0 1 N N N -24.185 12.678 26.404 -8.024 0.624 0.363 C4 V9A 15 V9A C14 C15 C 0 1 Y N N -24.136 11.405 33.866 3.021 3.199 1.217 C14 V9A 16 V9A C15 C16 C 0 1 Y N N -24.623 12.604 33.236 1.663 3.060 1.547 C15 V9A 17 V9A C2 C17 C 0 1 N N N -24.271 10.439 25.851 -8.772 -1.562 -0.072 C2 V9A 18 V9A C23 C18 C 0 1 N N N -30.034 8.440 37.192 6.881 -3.266 1.163 C23 V9A 19 V9A C6 C19 C 0 1 Y N N -27.396 13.080 28.323 -4.471 0.364 -0.681 C6 V9A 20 V9A C7 C20 C 0 1 Y N N -26.195 13.564 27.776 -5.509 1.022 -0.203 C7 V9A 21 V9A N1 N1 N 0 1 N N N -25.440 10.258 26.462 -7.590 -1.928 -0.504 N1 V9A 22 V9A N11 N2 N 0 1 N N N -23.648 9.308 25.200 -9.794 -2.478 -0.062 N11 V9A 23 V9A N19 N3 N 0 1 N N N -26.708 8.590 34.526 5.069 0.417 -0.156 N19 V9A 24 V9A N3 N4 N 0 1 N N N -23.644 11.618 25.817 -9.013 -0.291 0.358 N3 V9A 25 V9A O10 O2 O 0 1 N N N -23.547 13.927 26.362 -8.232 1.760 0.755 O10 V9A 26 V9A O12 O3 O 0 1 Y N N -26.293 11.182 33.476 2.386 1.140 0.788 O12 V9A 27 V9A O18 O4 O 0 1 N N N -24.449 8.610 35.012 5.659 2.511 0.296 O18 V9A 28 V9A O24 O5 O 0 1 N N N -30.785 7.440 37.033 7.049 -3.953 0.183 O24 V9A 29 V9A O27 O6 O 0 1 N N N -27.129 4.919 34.160 7.721 0.272 -2.710 O27 V9A 30 V9A O28 O7 O 0 1 N N N -27.245 6.718 32.580 5.628 0.977 -2.654 O28 V9A 31 V9A S5 S1 S 0 1 Y N N -27.503 11.440 27.937 -4.888 -1.297 -1.058 S5 V9A 32 V9A H1 H1 H 0 1 N N N -31.356 9.317 38.073 7.063 -4.776 2.430 H1 V9A 33 V9A H2 H2 H 0 1 N N N -28.777 14.722 28.485 -3.199 2.028 -1.092 H2 V9A 34 V9A H3 H3 H 0 1 N N N -29.270 13.238 29.369 -2.607 0.469 -1.714 H3 V9A 35 V9A H4 H4 H 0 1 N N N -26.927 12.479 30.417 -0.388 0.885 -0.644 H4 V9A 36 V9A H5 H5 H 0 1 N N N -25.780 13.821 30.750 -0.980 2.444 -0.021 H5 V9A 37 V9A H6 H6 H 0 1 N N N -27.303 15.396 30.164 -2.769 1.265 1.228 H6 V9A 38 V9A H7 H7 H 0 1 N N N -28.598 14.610 31.130 -2.177 -0.294 0.605 H7 V9A 39 V9A H8 H8 H 0 1 N N N -26.971 14.257 32.894 -0.550 1.680 2.299 H8 V9A 40 V9A H9 H9 H 0 1 N N N -28.025 12.840 32.566 0.042 0.122 1.676 H9 V9A 41 V9A H10 H10 H 0 1 N N N -26.270 6.974 35.806 7.150 0.638 -0.025 H10 V9A 42 V9A H11 H11 H 0 1 N N N -27.905 8.273 37.474 7.426 -1.237 1.538 H11 V9A 43 V9A H12 H12 H 0 1 N N N -28.400 9.374 36.144 5.673 -1.529 1.441 H12 V9A 44 V9A H13 H13 H 0 1 N N N -29.130 7.408 34.809 5.878 -1.961 -0.992 H13 V9A 45 V9A H14 H14 H 0 1 N N N -28.584 6.322 36.132 7.631 -1.669 -0.896 H14 V9A 46 V9A H15 H15 H 0 1 N N N -23.127 11.190 34.185 3.620 4.092 1.316 H15 V9A 47 V9A H16 H16 H 0 1 N N N -24.064 13.491 32.976 1.019 3.828 1.949 H16 V9A 48 V9A H17 H17 H 0 1 N N N -25.873 14.591 27.869 -5.456 2.060 0.089 H17 V9A 49 V9A H18 H18 H 0 1 N N N -24.095 8.414 25.215 -9.637 -3.383 -0.372 H18 V9A 50 V9A H19 H19 H 0 1 N N N -22.770 9.420 24.735 -10.674 -2.219 0.255 H19 V9A 51 V9A H20 H20 H 0 1 N N N -27.457 9.124 34.134 4.376 -0.262 -0.165 H20 V9A 52 V9A H21 H21 H 0 1 N N N -22.765 11.702 25.348 -9.898 -0.047 0.673 H21 V9A 53 V9A H22 H22 H 0 1 N N N -27.432 4.468 33.381 7.763 0.537 -3.639 H22 V9A 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V9A N11 C2 SING N N 1 V9A N3 C2 SING N N 2 V9A N3 C4 SING N N 3 V9A C2 N1 DOUB N N 4 V9A O10 C4 DOUB N N 5 V9A C4 C8 SING N N 6 V9A N1 C9 SING N N 7 V9A C8 C9 DOUB Y N 8 V9A C8 C7 SING Y N 9 V9A C9 S5 SING Y N 10 V9A C7 C6 DOUB Y N 11 V9A S5 C6 SING Y N 12 V9A C6 C30 SING N N 13 V9A C30 C31 SING N N 14 V9A C31 C32 SING N N 15 V9A C32 C33 SING N N 16 V9A C33 C16 SING N N 17 V9A O28 C26 DOUB N N 18 V9A C16 C15 DOUB Y N 19 V9A C16 O12 SING Y N 20 V9A C15 C14 SING Y N 21 V9A O12 C13 SING Y N 22 V9A C14 C13 DOUB Y N 23 V9A C26 O27 SING N N 24 V9A C26 C20 SING N N 25 V9A C13 C17 SING N N 26 V9A N19 C17 SING N N 27 V9A N19 C20 SING N N 28 V9A C17 O18 DOUB N N 29 V9A C20 C21 SING N N 30 V9A C21 C22 SING N N 31 V9A C22 C23 SING N N 32 V9A O24 C23 DOUB N N 33 V9A C23 O25 SING N N 34 V9A O25 H1 SING N N 35 V9A C30 H2 SING N N 36 V9A C30 H3 SING N N 37 V9A C32 H4 SING N N 38 V9A C32 H5 SING N N 39 V9A C31 H6 SING N N 40 V9A C31 H7 SING N N 41 V9A C33 H8 SING N N 42 V9A C33 H9 SING N N 43 V9A C20 H10 SING N N 44 V9A C22 H11 SING N N 45 V9A C22 H12 SING N N 46 V9A C21 H13 SING N N 47 V9A C21 H14 SING N N 48 V9A C14 H15 SING N N 49 V9A C15 H16 SING N N 50 V9A C7 H17 SING N N 51 V9A N11 H18 SING N N 52 V9A N11 H19 SING N N 53 V9A N19 H20 SING N N 54 V9A N3 H21 SING N N 55 V9A O27 H22 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V9A SMILES ACDLabs 12.01 "OC(CCC(C(O)=O)NC(=O)c3ccc(CCCCc1cc2c(s1)N=C(N)NC2=O)o3)=O" V9A InChI InChI 1.03 "InChI=1S/C20H22N4O7S/c21-20-23-16(27)12-9-11(32-18(12)24-20)4-2-1-3-10-5-7-14(31-10)17(28)22-13(19(29)30)6-8-15(25)26/h5,7,9,13H,1-4,6,8H2,(H,22,28)(H,25,26)(H,29,30)(H3,21,23,24,27)/t13-/m0/s1" V9A InChIKey InChI 1.03 LYDGQYDYRQVOBF-ZDUSSCGKSA-N V9A SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2sc(CCCCc3oc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cc2C(=O)N1" V9A SMILES CACTVS 3.385 "NC1=Nc2sc(CCCCc3oc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)cc2C(=O)N1" V9A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(oc1CCCCc2cc3c(s2)N=C(NC3=O)N)C(=O)N[C@@H](CCC(=O)O)C(=O)O" V9A SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(oc1CCCCc2cc3c(s2)N=C(NC3=O)N)C(=O)NC(CCC(=O)O)C(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V9A "SYSTEMATIC NAME" ACDLabs 12.01 "N-{5-[4-(2-amino-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-6-yl)butyl]furan-2-carbonyl}-L-glutamic acid" V9A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[5-[4-(2-azanyl-4-oxidanylidene-3~{H}-thieno[2,3-d]pyrimidin-6-yl)butyl]furan-2-yl]carbonylamino]pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V9A "Create component" 2020-07-20 RCSB V9A "Initial release" 2021-03-31 RCSB ##