data_V9G # _chem_comp.id V9G _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H32 N10 O17 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-21 _chem_comp.pdbx_modified_date 2020-08-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 801.468 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V9G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7JHE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V9G C1 C1 C 0 1 N N N 85.091 -31.660 41.804 ? ? ? C1 V9G 1 V9G N2 N1 N 0 1 Y N N 84.040 -29.596 40.943 ? ? ? N2 V9G 2 V9G C3 C2 C 0 1 N N N 83.302 -30.003 39.723 ? ? ? C3 V9G 3 V9G C4 C3 C 0 1 Y N N 83.935 -28.179 41.243 ? ? ? C4 V9G 4 V9G C5 C4 C 0 1 Y N N 85.263 -29.433 42.758 ? ? ? C5 V9G 5 V9G C6 C5 C 0 1 N N N 86.333 -31.214 43.749 ? ? ? C6 V9G 6 V9G C8 C6 C 0 1 N N R 86.332 -26.386 42.873 ? ? ? C8 V9G 7 V9G C9 C7 C 0 1 N N S 86.060 -25.337 41.818 ? ? ? C9 V9G 8 V9G C10 C8 C 0 1 N N R 84.681 -24.841 42.215 ? ? ? C10 V9G 9 V9G C11 C9 C 0 1 N N N 83.938 -24.210 41.046 ? ? ? C11 V9G 10 V9G C12 C10 C 0 1 N N N 86.403 -25.579 33.371 ? ? ? C12 V9G 11 V9G C13 C11 C 0 1 N N R 86.538 -24.506 32.320 ? ? ? C13 V9G 12 V9G C14 C12 C 0 1 N N R 87.987 -24.256 31.965 ? ? ? C14 V9G 13 V9G C15 C13 C 0 1 N N R 87.941 -22.844 31.447 ? ? ? C15 V9G 14 V9G C16 C14 C 0 1 N N R 86.835 -22.213 32.281 ? ? ? C16 V9G 15 V9G C17 C15 C 0 1 Y N N 87.866 -22.050 34.558 ? ? ? C17 V9G 16 V9G C18 C16 C 0 1 Y N N 88.530 -19.968 34.562 ? ? ? C18 V9G 17 V9G C19 C17 C 0 1 Y N N 89.032 -18.687 34.792 ? ? ? C19 V9G 18 V9G C2 C18 C 0 1 Y N N 84.785 -30.309 41.790 ? ? ? C2 V9G 19 V9G C20 C19 C 0 1 Y N N 88.317 -18.012 32.661 ? ? ? C20 V9G 20 V9G C21 C20 C 0 1 Y N N 87.921 -20.234 33.353 ? ? ? C21 V9G 21 V9G C22 C21 C 0 1 N N N 88.740 -22.210 29.270 ? ? ? C22 V9G 22 V9G C7 C22 C 0 1 N N R 84.954 -26.961 43.153 ? ? ? C7 V9G 23 V9G N1 N2 N 0 1 N N N 87.118 -31.677 44.738 ? ? ? N1 V9G 24 V9G N3 N3 N 0 1 Y N N 84.769 -28.247 42.432 ? ? ? N3 V9G 25 V9G N4 N4 N 0 1 N N N 86.040 -29.894 43.745 ? ? ? N4 V9G 26 V9G N5 N5 N 0 1 N N N 85.877 -32.089 42.802 ? ? ? N5 V9G 27 V9G N6 N6 N 0 1 Y N N 87.512 -21.509 33.386 ? ? ? N6 V9G 28 V9G O1 O1 O 0 1 N N N 84.679 -32.455 40.946 ? ? ? O1 V9G 29 V9G O2 O2 O 0 1 N N N 87.038 -24.300 41.799 ? ? ? O2 V9G 30 V9G O3 O3 O 0 1 N N N 83.987 -25.982 42.749 ? ? ? O3 V9G 31 V9G O4 O4 O 0 1 N N N 86.866 -25.805 44.071 ? ? ? O4 V9G 32 V9G O13 O5 O 0 1 N N N 87.508 -27.493 35.613 ? ? ? O13 V9G 33 V9G P3 P1 P 0 1 N N N 87.190 -26.035 35.819 ? ? ? P3 V9G 34 V9G O12 O6 O 0 1 N N N 88.194 -25.386 36.728 ? ? ? O12 V9G 35 V9G O14 O7 O 0 1 N N N 87.275 -25.250 34.435 ? ? ? O14 V9G 36 V9G O16 O8 O 0 1 N N N 88.480 -25.204 31.025 ? ? ? O16 V9G 37 V9G O17 O9 O 0 1 N N N 87.657 -22.768 30.042 ? ? ? O17 V9G 38 V9G N7 N7 N 0 1 Y N N 88.491 -21.106 35.291 ? ? ? N7 V9G 39 V9G N8 N8 N 0 1 N N N 89.635 -18.399 35.970 ? ? ? N8 V9G 40 V9G N9 N9 N 0 1 Y N N 88.914 -17.730 33.831 ? ? ? N9 V9G 41 V9G N10 N10 N 0 1 Y N N 87.826 -19.243 32.424 ? ? ? N10 V9G 42 V9G O15 O10 O 0 1 N N N 86.021 -23.259 32.796 ? ? ? O15 V9G 43 V9G O11 O11 O 0 1 N N N 85.685 -25.916 36.362 ? ? ? O11 V9G 44 V9G P2 P2 P 0 1 N N N 85.068 -26.858 37.501 ? ? ? P2 V9G 45 V9G O9 O12 O 0 1 N N N 85.931 -26.753 38.718 ? ? ? O9 V9G 46 V9G O10 O13 O 0 1 N N N 84.935 -28.299 37.064 ? ? ? O10 V9G 47 V9G O7 O14 O 0 1 N N N 83.608 -26.254 37.782 ? ? ? O7 V9G 48 V9G P1 P3 P 0 1 N N N 83.362 -24.867 38.567 ? ? ? P1 V9G 49 V9G O5 O15 O 0 1 N N N 84.387 -23.815 38.247 ? ? ? O5 V9G 50 V9G O6 O16 O 0 1 N N N 81.962 -24.392 38.257 ? ? ? O6 V9G 51 V9G O8 O17 O 0 1 N N N 83.496 -25.209 40.130 ? ? ? O8 V9G 52 V9G H1 H1 H 0 1 N N N 83.428 -31.084 39.561 ? ? ? H1 V9G 53 V9G H2 H2 H 0 1 N N N 82.234 -29.773 39.847 ? ? ? H2 V9G 54 V9G H3 H3 H 0 1 N N N 83.697 -29.454 38.855 ? ? ? H3 V9G 55 V9G H4 H4 H 0 1 N N N 83.420 -27.364 40.756 ? ? ? H4 V9G 56 V9G H5 H5 H 0 1 N N N 86.996 -27.167 42.473 ? ? ? H5 V9G 57 V9G H6 H6 H 0 1 N N N 85.998 -25.823 40.833 ? ? ? H6 V9G 58 V9G H7 H7 H 0 1 N N N 84.798 -24.081 43.002 ? ? ? H7 V9G 59 V9G H8 H8 H 0 1 N N N 84.611 -23.514 40.524 ? ? ? H8 V9G 60 V9G H9 H9 H 0 1 N N N 83.066 -23.659 41.428 ? ? ? H9 V9G 61 V9G H10 H10 H 0 1 N N N 85.366 -25.619 33.735 ? ? ? H10 V9G 62 V9G H11 H11 H 0 1 N N N 86.680 -26.556 32.947 ? ? ? H11 V9G 63 V9G H12 H12 H 0 1 N N N 85.997 -24.819 31.415 ? ? ? H12 V9G 64 V9G H13 H13 H 0 1 N N N 88.590 -24.283 32.884 ? ? ? H13 V9G 65 V9G H14 H14 H 0 1 N N N 88.893 -22.342 31.672 ? ? ? H14 V9G 66 V9G H15 H15 H 0 1 N N N 86.252 -21.510 31.668 ? ? ? H15 V9G 67 V9G H16 H16 H 0 1 N N N 87.682 -23.069 34.865 ? ? ? H16 V9G 68 V9G H17 H17 H 0 1 N N N 88.230 -17.246 31.905 ? ? ? H17 V9G 69 V9G H18 H18 H 0 1 N N N 88.457 -22.181 28.207 ? ? ? H18 V9G 70 V9G H19 H19 H 0 1 N N N 88.952 -21.189 29.621 ? ? ? H19 V9G 71 V9G H20 H20 H 0 1 N N N 89.637 -22.834 29.393 ? ? ? H20 V9G 72 V9G H21 H21 H 0 1 N N N 84.865 -27.143 44.234 ? ? ? H21 V9G 73 V9G H22 H22 H 0 1 N N N 87.463 -31.051 45.437 ? ? ? H22 V9G 74 V9G H23 H23 H 0 1 N N N 87.356 -32.647 44.774 ? ? ? H23 V9G 75 V9G H24 H24 H 0 1 N N N 86.131 -33.055 42.854 ? ? ? H24 V9G 76 V9G H25 H25 H 0 1 N N N 87.879 -24.662 41.546 ? ? ? H25 V9G 77 V9G H26 H26 H 0 1 N N N 87.025 -26.489 44.711 ? ? ? H26 V9G 78 V9G H27 H27 H 0 1 N N N 88.840 -26.029 36.998 ? ? ? H27 V9G 79 V9G H28 H28 H 0 1 N N N 88.481 -26.069 31.418 ? ? ? H28 V9G 80 V9G H29 H29 H 0 1 N N N 89.933 -17.445 35.968 ? ? ? H29 V9G 81 V9G H30 H30 H 0 1 N N N 88.989 -18.544 36.719 ? ? ? H30 V9G 82 V9G H31 H31 H 0 1 N N N 86.225 -27.619 38.974 ? ? ? H31 V9G 83 V9G H32 H32 H 0 1 N N N 81.996 -23.507 37.914 ? ? ? H32 V9G 84 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V9G C22 O17 SING N N 1 V9G O17 C15 SING N N 2 V9G O16 C14 SING N N 3 V9G C15 C14 SING N N 4 V9G C15 C16 SING N N 5 V9G C14 C13 SING N N 6 V9G C16 O15 SING N N 7 V9G C16 N6 SING N N 8 V9G C13 O15 SING N N 9 V9G C13 C12 SING N N 10 V9G N10 C20 DOUB Y N 11 V9G N10 C21 SING Y N 12 V9G C20 N9 SING Y N 13 V9G C21 N6 SING Y N 14 V9G C21 C18 DOUB Y N 15 V9G C12 O14 SING N N 16 V9G N6 C17 SING Y N 17 V9G N9 C19 DOUB Y N 18 V9G O14 P3 SING N N 19 V9G C17 N7 DOUB Y N 20 V9G C18 C19 SING Y N 21 V9G C18 N7 SING Y N 22 V9G C19 N8 SING N N 23 V9G O13 P3 DOUB N N 24 V9G P3 O11 SING N N 25 V9G P3 O12 SING N N 26 V9G O11 P2 SING N N 27 V9G O10 P2 DOUB N N 28 V9G P2 O7 SING N N 29 V9G P2 O9 SING N N 30 V9G O7 P1 SING N N 31 V9G O5 P1 DOUB N N 32 V9G O6 P1 SING N N 33 V9G P1 O8 SING N N 34 V9G C3 N2 SING N N 35 V9G O8 C11 SING N N 36 V9G N2 C4 SING Y N 37 V9G N2 C2 SING Y N 38 V9G O1 C1 DOUB N N 39 V9G C11 C10 SING N N 40 V9G C4 N3 DOUB Y N 41 V9G C2 C1 SING N N 42 V9G C2 C5 DOUB Y N 43 V9G O2 C9 SING N N 44 V9G C1 N5 SING N N 45 V9G C9 C10 SING N N 46 V9G C9 C8 SING N N 47 V9G C10 O3 SING N N 48 V9G N3 C5 SING Y N 49 V9G N3 C7 SING N N 50 V9G O3 C7 SING N N 51 V9G C5 N4 SING N N 52 V9G N5 C6 SING N N 53 V9G C8 C7 SING N N 54 V9G C8 O4 SING N N 55 V9G N4 C6 DOUB N N 56 V9G C6 N1 SING N N 57 V9G C3 H1 SING N N 58 V9G C3 H2 SING N N 59 V9G C3 H3 SING N N 60 V9G C4 H4 SING N N 61 V9G C8 H5 SING N N 62 V9G C9 H6 SING N N 63 V9G C10 H7 SING N N 64 V9G C11 H8 SING N N 65 V9G C11 H9 SING N N 66 V9G C12 H10 SING N N 67 V9G C12 H11 SING N N 68 V9G C13 H12 SING N N 69 V9G C14 H13 SING N N 70 V9G C15 H14 SING N N 71 V9G C16 H15 SING N N 72 V9G C17 H16 SING N N 73 V9G C20 H17 SING N N 74 V9G C22 H18 SING N N 75 V9G C22 H19 SING N N 76 V9G C22 H20 SING N N 77 V9G C7 H21 SING N N 78 V9G N1 H22 SING N N 79 V9G N1 H23 SING N N 80 V9G N5 H24 SING N N 81 V9G O2 H25 SING N N 82 V9G O4 H26 SING N N 83 V9G O12 H27 SING N N 84 V9G O16 H28 SING N N 85 V9G N8 H29 SING N N 86 V9G N8 H30 SING N N 87 V9G O9 H31 SING N N 88 V9G O6 H32 SING N N 89 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V9G InChI InChI 1.03 "InChI=1S/C22H32N10O17P3/c1-30-7-32(18-11(30)19(36)29-22(24)28-18)20-14(35)12(33)8(46-20)3-44-50(37,38)48-52(41,42)49-51(39,40)45-4-9-13(34)15(43-2)21(47-9)31-6-27-10-16(23)25-5-26-17(10)31/h5-9,12-15,20-21,33-35H,3-4H2,1-2H3,(H,37,38)(H,39,40)(H,41,42)(H2,23,25,26)(H3,24,28,29,36)/t8-,9-,12-,13-,14-,15-,20-,21-/m1/s1" V9G InChIKey InChI 1.03 WZAAWBDISKLAIE-NAGRZYTCSA-N V9G SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)[n]3cn(C)c4C(=O)NC(=Nc34)N)O[C@H]1n5cnc6c(N)ncnc56" V9G SMILES CACTVS 3.385 "CO[CH]1[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)[n]3cn(C)c4C(=O)NC(=Nc34)N)O[CH]1n5cnc6c(N)ncnc56" V9G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C=[N](C2=C1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)OC)O)O)O" V9G SMILES "OpenEye OEToolkits" 2.0.7 "CN1C=[N](C2=C1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)OC)O)O)O" # _pdbx_chem_comp_identifier.comp_id V9G _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id V9G _pdbx_chem_comp_synonyms.name "[[(2~{R},3~{R},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V9G "Create component" 2020-07-21 RCSB V9G "Initial release" 2020-08-26 RCSB ##