data_V9M # _chem_comp.id V9M _chem_comp.name "(3R)-N-[(1S)-1-carboxy-2-methylpropyl]-N,3,5,5-tetramethylhexan-1-aminium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H32 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2020-07-21 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.420 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V9M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JFR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V9M C C C 0 1 N N N Y N Y 2.912 41.442 16.580 2.695 1.354 -0.089 C V9M 1 V9M CA CA C 0 1 N N S Y N N 2.448 40.340 17.542 2.735 -0.081 0.371 CA V9M 2 V9M CB CB C 0 1 N N N N N N 2.666 40.739 18.992 3.995 -0.756 -0.173 CB V9M 3 V9M CG1 CG1 C 0 1 N N N N N N 4.142 41.128 19.336 5.232 -0.107 0.451 CG1 V9M 4 V9M N N N 1 1 N N N Y Y N 3.009 39.062 17.160 1.547 -0.788 -0.126 N V9M 5 V9M C40 C40 C 0 1 N N N N N N 2.153 38.044 17.721 0.337 -0.089 0.327 C40 V9M 6 V9M C42 C42 C 0 1 N N N N N N 2.796 37.243 18.720 -0.900 -0.888 -0.092 C42 V9M 7 V9M C43 C43 C 0 1 N N R N N N 1.855 36.349 19.376 -2.160 -0.161 0.379 C43 V9M 8 V9M C44 C44 C 0 1 N N N N N N 0.939 37.081 20.248 -3.397 -0.892 -0.145 C44 V9M 9 V9M C45 C45 C 0 1 N N N N N N -0.515 37.095 20.105 -4.578 0.079 -0.203 C45 V9M 10 V9M C46 C46 C 0 1 N N N N N N -1.137 35.819 20.347 -4.253 1.220 -1.170 C46 V9M 11 V9M C47 C47 C 0 1 N N N N N N -1.033 37.666 18.893 -5.825 -0.662 -0.689 C47 V9M 12 V9M C48 C48 C 0 1 N N N N N N -0.968 37.953 21.165 -4.836 0.652 1.192 C48 V9M 13 V9M C49 C49 C 0 1 N N N N N N 1.201 35.432 18.482 -2.193 -0.136 1.909 C49 V9M 14 V9M O O O 0 1 N N N Y N Y 4.068 41.756 16.420 1.868 1.706 -0.897 O V9M 15 V9M C54 C54 C 0 1 N N N N N N 3.024 38.934 15.694 1.574 -0.820 -1.594 C54 V9M 16 V9M CG2 CG2 C 0 1 N N N N N N 1.835 41.865 19.313 3.968 -2.245 0.178 CG2 V9M 17 V9M OXT OXT O 0 1 N Y N Y N Y 1.843 42.077 15.847 3.574 2.241 0.401 OXT V9M 18 V9M HA HA H 0 1 N N N Y N N 1.359 40.263 17.408 2.748 -0.112 1.461 HA V9M 19 V9M HB HB H 0 1 N N N N N N 2.387 39.887 19.629 4.031 -0.639 -1.256 HB V9M 20 V9M HG13 HG13 H 0 0 N N N N N N 4.211 41.402 20.399 5.196 -0.224 1.534 HG13 V9M 21 V9M HG11 HG11 H 0 0 N N N N N N 4.803 40.272 19.134 6.130 -0.588 0.064 HG11 V9M 22 V9M HG12 HG12 H 0 0 N N N N N N 4.450 41.983 18.716 5.251 0.954 0.201 HG12 V9M 23 V9M H HN H 0 1 N N N Y Y N 3.938 38.971 17.519 1.544 -1.732 0.231 HN V9M 24 V9M H401 H401 H 0 0 N N N N N N 1.281 38.535 18.177 0.357 0.007 1.412 H401 V9M 25 V9M H402 H402 H 0 0 N N N N N N 1.818 37.384 16.908 0.299 0.902 -0.125 H402 V9M 26 V9M H422 H422 H 0 0 N N N N N N 3.585 36.643 18.243 -0.920 -0.984 -1.177 H422 V9M 27 V9M H421 H421 H 0 0 N N N N N N 3.244 37.906 19.475 -0.862 -1.879 0.360 H421 V9M 28 V9M H431 H431 H 0 0 N N N N N N 2.463 35.725 20.048 -2.154 0.861 -0.001 H431 V9M 29 V9M H442 H442 H 0 0 N N N N N N 1.131 36.701 21.262 -3.195 -1.277 -1.145 H442 V9M 30 V9M H441 H441 H 0 0 N N N N N N 1.251 38.134 20.185 -3.640 -1.720 0.521 H441 V9M 31 V9M H463 H463 H 0 0 N N N N N N -0.737 35.386 21.276 -4.069 0.812 -2.164 H463 V9M 32 V9M H462 H462 H 0 0 N N N N N N -2.224 35.954 20.444 -5.095 1.912 -1.211 H462 V9M 33 V9M H461 H461 H 0 0 N N N N N N -0.925 35.142 19.506 -3.365 1.748 -0.824 H461 V9M 34 V9M H472 H472 H 0 0 N N N N N N -2.132 37.618 18.905 -6.056 -1.474 -0.000 H472 V9M 35 V9M H473 H473 H 0 0 N N N N N N -0.713 38.716 18.816 -6.666 0.030 -0.730 H473 V9M 36 V9M H471 H471 H 0 0 N N N N N N -0.651 37.102 18.029 -5.641 -1.069 -1.683 H471 V9M 37 V9M H482 H482 H 0 0 N N N N N N -0.603 37.569 22.129 -4.022 1.323 1.466 H482 V9M 38 V9M H483 H483 H 0 0 N N N N N N -0.580 38.970 21.005 -5.777 1.203 1.190 H483 V9M 39 V9M H481 H481 H 0 0 N N N N N N -2.068 37.977 21.173 -4.894 -0.163 1.914 H481 V9M 40 V9M H493 H493 H 0 0 N N N N N N 0.509 34.794 19.052 -3.139 0.289 2.245 H493 V9M 41 V9M H491 H491 H 0 0 N N N N N N 0.638 35.997 17.724 -2.095 -1.152 2.291 H491 V9M 42 V9M H492 H492 H 0 0 N N N N N N 1.955 34.803 17.986 -1.369 0.474 2.280 H492 V9M 43 V9M H542 H542 H 0 0 N N N N N N 3.452 37.960 15.415 0.654 -1.271 -1.965 H542 V9M 44 V9M H543 H543 H 0 0 N N N N N N 1.996 39.007 15.309 1.661 0.197 -1.978 H543 V9M 45 V9M H541 H541 H 0 0 N N N N N N 3.635 39.740 15.262 2.428 -1.408 -1.929 H541 V9M 46 V9M HG21 HG21 H 0 0 N N N N N N 1.995 42.152 20.363 3.049 -2.691 -0.201 HG21 V9M 47 V9M HG23 HG23 H 0 0 N N N N N N 2.094 42.710 18.659 4.826 -2.741 -0.276 HG23 V9M 48 V9M HG22 HG22 H 0 0 N N N N N N 0.779 41.596 19.163 4.011 -2.364 1.261 HG22 V9M 49 V9M HXT HXT H 0 1 N Y N Y N Y 2.205 42.735 15.265 3.510 3.149 0.076 HXT V9M 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V9M C54 N SING N N 1 V9M O C DOUB N N 2 V9M C CA SING N N 3 V9M N CA SING N N 4 V9M N C40 SING N N 5 V9M CA CB SING N N 6 V9M C40 C42 SING N N 7 V9M C49 C43 SING N N 8 V9M C42 C43 SING N N 9 V9M C47 C45 SING N N 10 V9M CB CG2 SING N N 11 V9M CB CG1 SING N N 12 V9M C43 C44 SING N N 13 V9M C45 C44 SING N N 14 V9M C45 C46 SING N N 15 V9M C45 C48 SING N N 16 V9M C OXT SING N N 17 V9M CA HA SING N N 18 V9M CB HB SING N N 19 V9M CG1 HG13 SING N N 20 V9M CG1 HG11 SING N N 21 V9M CG1 HG12 SING N N 22 V9M N H SING N N 23 V9M C40 H401 SING N N 24 V9M C40 H402 SING N N 25 V9M C42 H422 SING N N 26 V9M C42 H421 SING N N 27 V9M C43 H431 SING N N 28 V9M C44 H442 SING N N 29 V9M C44 H441 SING N N 30 V9M C46 H463 SING N N 31 V9M C46 H462 SING N N 32 V9M C46 H461 SING N N 33 V9M C47 H472 SING N N 34 V9M C47 H473 SING N N 35 V9M C47 H471 SING N N 36 V9M C48 H482 SING N N 37 V9M C48 H483 SING N N 38 V9M C48 H481 SING N N 39 V9M C49 H493 SING N N 40 V9M C49 H491 SING N N 41 V9M C49 H492 SING N N 42 V9M C54 H542 SING N N 43 V9M C54 H543 SING N N 44 V9M C54 H541 SING N N 45 V9M CG2 HG21 SING N N 46 V9M CG2 HG23 SING N N 47 V9M CG2 HG22 SING N N 48 V9M OXT HXT SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V9M SMILES ACDLabs 12.01 "C(C(C(C)C)[NH+](CCC(CC(C)(C)C)C)C)(O)=O" V9M InChI InChI 1.03 "InChI=1S/C15H31NO2/c1-11(2)13(14(17)18)16(7)9-8-12(3)10-15(4,5)6/h11-13H,8-10H2,1-7H3,(H,17,18)/p+1/t12-,13-/m0/s1" V9M InChIKey InChI 1.03 OJDKVOGMPHTYGS-STQMWFEESA-O V9M SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H]([NH+](C)CC[C@H](C)CC(C)(C)C)C(O)=O" V9M SMILES CACTVS 3.385 "CC(C)[CH]([NH+](C)CC[CH](C)CC(C)(C)C)C(O)=O" V9M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](CC[NH+](C)[C@@H](C(C)C)C(=O)O)CC(C)(C)C" V9M SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)O)[NH+](C)CCC(C)CC(C)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V9M "SYSTEMATIC NAME" ACDLabs 12.01 "(3R)-N-[(1S)-1-carboxy-2-methylpropyl]-N,3,5,5-tetramethylhexan-1-aminium" V9M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl-[(2~{S})-3-methyl-1-oxidanyl-1-oxidanylidene-butan-2-yl]-[(3~{R})-3,5,5-trimethylhexyl]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V9M "Create component" 2020-07-21 RCSB V9M "Initial release" 2020-09-16 RCSB V9M "Modify backbone" 2023-11-03 PDBE #