data_V9N
#
_chem_comp.id V9N
_chem_comp.name "(3S)-N7,3-dimethyl-N5-[(1R,5S)-3-oxabicyclo[3.1.0]hexan-6-yl]-3-phenyl-2H-1-benzofuran-5,7-dicarboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H24 N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "rac-N5-((1R,5S)-3-oxabicyclo[3.1.0]hexan-6-yl)-N7,3-dimethyl-3-phenyl-2,3-dihydrobenzofuran-5,7-dicarboxamide"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-05-02
_chem_comp.pdbx_modified_date 2021-07-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 392.448
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code V9N
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7OE9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V9N N1 N1 N 0 1 N N N 45.830 16.725 9.442 2.932 0.135 -0.138 N1 V9N 1
V9N C4 C1 C 0 1 Y N N 43.620 17.705 9.332 0.499 -0.030 -0.336 C4 V9N 2
V9N C5 C2 C 0 1 Y N N 42.702 18.506 10.006 -0.725 0.599 -0.595 C5 V9N 3
V9N C6 C3 C 0 1 Y N N 41.361 18.468 9.648 -1.893 -0.120 -0.550 C6 V9N 4
V9N C7 C4 C 0 1 Y N N 40.943 17.645 8.627 -1.888 -1.479 -0.254 C7 V9N 5
V9N C8 C5 C 0 1 N N N 39.087 18.832 9.188 -4.098 -0.924 -0.161 C8 V9N 6
V9N C10 C6 C 0 1 N N N 40.367 20.662 10.404 -3.649 0.425 -2.260 C10 V9N 7
V9N C13 C7 C 0 1 Y N N 38.913 16.593 12.844 -5.237 3.252 0.584 C13 V9N 8
V9N C15 C8 C 0 1 Y N N 39.837 18.441 14.030 -2.988 3.352 1.398 C15 V9N 9
V9N C17 C9 C 0 1 N N N 45.057 17.777 9.747 1.756 0.743 -0.387 C17 V9N 10
V9N C20 C10 C 0 1 N N N 48.983 16.058 11.579 6.290 1.743 1.150 C20 V9N 11
V9N C21 C11 C 0 1 N N N 49.483 15.529 9.356 6.704 0.937 -0.959 C21 V9N 12
V9N C22 C12 C 0 1 N N S 47.968 15.398 9.489 5.469 0.133 -0.482 C22 V9N 13
V9N O2 O1 O 0 1 N N N 45.496 18.763 10.342 1.730 1.929 -0.655 O2 V9N 14
V9N C18 C13 C 0 1 N N N 47.239 16.657 9.802 4.179 0.902 -0.188 C18 V9N 15
V9N O3 O2 O 0 1 N N N 49.906 16.298 10.499 6.674 2.153 -0.180 O3 V9N 16
V9N C19 C14 C 0 1 N N R 47.645 15.752 10.913 5.192 0.678 0.937 C19 V9N 17
V9N C3 C15 C 0 1 Y N N 43.190 16.876 8.293 0.525 -1.387 -0.025 C3 V9N 18
V9N C9 C16 C 0 1 N N S 40.146 19.137 10.271 -3.340 0.280 -0.768 C9 V9N 19
V9N C11 C17 C 0 1 Y N N 39.806 18.470 11.616 -3.666 1.551 -0.027 C11 V9N 20
V9N C16 C18 C 0 1 Y N N 40.131 19.068 12.830 -2.688 2.189 0.714 C16 V9N 21
V9N C14 C19 C 0 1 Y N N 39.233 17.203 14.036 -4.263 3.883 1.334 C14 V9N 22
V9N C12 C20 C 0 1 Y N N 39.190 17.221 11.642 -4.939 2.086 -0.097 C12 V9N 23
V9N O1 O3 O 0 1 N N N 39.583 17.694 8.413 -3.145 -1.993 -0.279 O1 V9N 24
V9N C2 C21 C 0 1 Y N N 41.837 16.832 7.925 -0.660 -2.115 0.014 C2 V9N 25
V9N C1 C22 C 0 1 N N N 41.432 15.895 6.823 -0.631 -3.552 0.349 C1 V9N 26
V9N O O4 O 0 1 N N N 42.225 15.080 6.356 -1.666 -4.189 0.383 O V9N 27
V9N N N2 N 0 1 N N N 40.167 15.971 6.407 0.542 -4.159 0.616 N V9N 28
V9N C C23 C 0 1 N N N 39.630 15.055 5.416 0.571 -5.585 0.947 C V9N 29
V9N H1 H1 H 0 1 N N N 45.423 15.957 8.948 2.953 -0.810 0.080 H1 V9N 30
V9N H2 H2 H 0 1 N N N 43.032 19.154 10.804 -0.749 1.653 -0.831 H2 V9N 31
V9N H3 H3 H 0 1 N N N 38.954 19.706 8.533 -4.343 -0.738 0.885 H3 V9N 32
V9N H4 H4 H 0 1 N N N 38.126 18.578 9.660 -5.000 -1.141 -0.734 H4 V9N 33
V9N H5 H5 H 0 1 N N N 41.123 20.857 11.179 -3.469 -0.525 -2.762 H5 V9N 34
V9N H6 H6 H 0 1 N N N 40.715 21.067 9.442 -4.693 0.712 -2.389 H6 V9N 35
V9N H7 H7 H 0 1 N N N 39.420 21.146 10.685 -3.005 1.192 -2.691 H7 V9N 36
V9N H8 H8 H 0 1 N N N 38.444 15.620 12.847 -6.233 3.666 0.533 H8 V9N 37
V9N H9 H9 H 0 1 N N N 40.082 18.925 14.964 -2.227 3.845 1.984 H9 V9N 38
V9N H10 H10 H 0 1 N N N 49.315 15.202 12.185 7.142 1.310 1.675 H10 V9N 39
V9N H11 H11 H 0 1 N N N 48.899 16.949 12.218 5.893 2.591 1.709 H11 V9N 40
V9N H12 H12 H 0 1 N N N 49.957 14.536 9.364 7.620 0.380 -0.758 H12 V9N 41
V9N H13 H13 H 0 1 N N N 49.743 16.052 8.424 6.622 1.164 -2.022 H13 V9N 42
V9N H14 H14 H 0 1 N N N 47.450 14.562 8.997 5.422 -0.926 -0.736 H14 V9N 43
V9N H15 H15 H 0 1 N N N 47.818 17.587 9.702 4.094 1.911 -0.591 H15 V9N 44
V9N H16 H16 H 0 1 N N N 46.886 15.176 11.463 4.938 0.027 1.773 H16 V9N 45
V9N H17 H17 H 0 1 N N N 43.907 16.262 7.768 1.465 -1.876 0.183 H17 V9N 46
V9N H18 H18 H 0 1 N N N 40.618 20.032 12.837 -1.691 1.776 0.761 H18 V9N 47
V9N H19 H19 H 0 1 N N N 39.011 16.713 14.972 -4.497 4.791 1.869 H19 V9N 48
V9N H20 H20 H 0 1 N N N 38.925 16.737 10.714 -5.700 1.592 -0.683 H20 V9N 49
V9N H21 H21 H 0 1 N N N 39.572 16.678 6.788 1.368 -3.651 0.588 H21 V9N 50
V9N H22 H22 H 0 1 N N N 38.575 15.299 5.224 -0.027 -5.762 1.842 H22 V9N 51
V9N H23 H23 H 0 1 N N N 40.203 15.148 4.482 0.160 -6.160 0.117 H23 V9N 52
V9N H24 H24 H 0 1 N N N 39.705 14.024 5.791 1.599 -5.895 1.131 H24 V9N 53
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V9N C N SING N N 1
V9N O C1 DOUB N N 2
V9N N C1 SING N N 3
V9N C1 C2 SING N N 4
V9N C2 C3 DOUB Y N 5
V9N C2 C7 SING Y N 6
V9N C3 C4 SING Y N 7
V9N O1 C7 SING N N 8
V9N O1 C8 SING N N 9
V9N C7 C6 DOUB Y N 10
V9N C8 C9 SING N N 11
V9N C4 C17 SING N N 12
V9N C4 C5 DOUB Y N 13
V9N C21 C22 SING N N 14
V9N C21 O3 SING N N 15
V9N N1 C17 SING N N 16
V9N N1 C18 SING N N 17
V9N C22 C18 SING N N 18
V9N C22 C19 SING N N 19
V9N C6 C5 SING Y N 20
V9N C6 C9 SING N N 21
V9N C17 O2 DOUB N N 22
V9N C18 C19 SING N N 23
V9N C9 C10 SING N N 24
V9N C9 C11 SING N N 25
V9N O3 C20 SING N N 26
V9N C19 C20 SING N N 27
V9N C11 C12 DOUB Y N 28
V9N C11 C16 SING Y N 29
V9N C12 C13 SING Y N 30
V9N C16 C15 DOUB Y N 31
V9N C13 C14 DOUB Y N 32
V9N C15 C14 SING Y N 33
V9N N1 H1 SING N N 34
V9N C5 H2 SING N N 35
V9N C8 H3 SING N N 36
V9N C8 H4 SING N N 37
V9N C10 H5 SING N N 38
V9N C10 H6 SING N N 39
V9N C10 H7 SING N N 40
V9N C13 H8 SING N N 41
V9N C15 H9 SING N N 42
V9N C20 H10 SING N N 43
V9N C20 H11 SING N N 44
V9N C21 H12 SING N N 45
V9N C21 H13 SING N N 46
V9N C22 H14 SING N N 47
V9N C18 H15 SING N N 48
V9N C19 H16 SING N N 49
V9N C3 H17 SING N N 50
V9N C16 H18 SING N N 51
V9N C14 H19 SING N N 52
V9N C12 H20 SING N N 53
V9N N H21 SING N N 54
V9N C H22 SING N N 55
V9N C H23 SING N N 56
V9N C H24 SING N N 57
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V9N InChI InChI 1.03 "InChI=1S/C23H24N2O4/c1-23(14-6-4-3-5-7-14)12-29-20-15(22(27)24-2)8-13(9-18(20)23)21(26)25-19-16-10-28-11-17(16)19/h3-9,16-17,19H,10-12H2,1-2H3,(H,24,27)(H,25,26)/t16-,17+,19+,23-/m0/s1"
V9N InChIKey InChI 1.03 RDGLEZJKVBSRJX-MUCNXURCSA-N
V9N SMILES_CANONICAL CACTVS 3.385 "CNC(=O)c1cc(cc2c1OC[C@@]2(C)c3ccccc3)C(=O)NC4[C@@H]5COC[C@H]45"
V9N SMILES CACTVS 3.385 "CNC(=O)c1cc(cc2c1OC[C]2(C)c3ccccc3)C(=O)NC4[CH]5COC[CH]45"
V9N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]1(COc2c1cc(cc2C(=O)NC)C(=O)NC3[C@H]4[C@@H]3COC4)c5ccccc5"
V9N SMILES "OpenEye OEToolkits" 2.0.7 "CC1(COc2c1cc(cc2C(=O)NC)C(=O)NC3C4C3COC4)c5ccccc5"
#
_pdbx_chem_comp_identifier.comp_id V9N
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(3~{S})-~{N}7,3-dimethyl-~{N}5-[(1~{R},5~{S})-3-oxabicyclo[3.1.0]hexan-6-yl]-3-phenyl-2~{H}-1-benzofuran-5,7-dicarboxamide"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id V9N
_pdbx_chem_comp_synonyms.name "rac-N5-((1R,5S)-3-oxabicyclo[3.1.0]hexan-6-yl)-N7,3-dimethyl-3-phenyl-2,3-dihydrobenzofuran-5,7-dicarboxamide"
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V9N "Create component" 2021-05-02 PDBE
V9N "Initial release" 2021-07-28 RCSB
##