data_V9Q
#
_chem_comp.id V9Q
_chem_comp.name "(3S)-3-(1H-indol-4-yl)-N7-methyl-N5-[(1R,5S)-3-oxabicyclo[3.1.0]hexan-6-yl]-2,3-dihydro-1-benzofuran-5,7-dicarboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H23 N3 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "N5-((1R,5S,6r)-3-oxabicyclo[3.1.0]hexan-6-yl)-3-(1H-indol-4-yl)-N7-methyl-2,3-dihydrobenzofuran-5,7-dicarboxamide"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-05-02
_chem_comp.pdbx_modified_date 2021-07-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 417.457
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code V9Q
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7OE8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V9Q C10 C1 C 0 1 N N S 40.296 19.699 9.839 2.845 0.240 -1.165 C10 V9Q 1
V9Q C13 C2 C 0 1 Y N N 40.967 17.908 8.433 1.203 1.781 -0.535 C13 V9Q 2
V9Q C15 C3 C 0 1 Y N N 40.179 21.017 11.995 3.603 0.238 1.207 C15 V9Q 3
V9Q C17 C4 C 0 1 Y N N 39.614 20.036 14.131 4.986 -1.502 2.121 C17 V9Q 4
V9Q C20 C5 C 0 1 Y N N 39.266 16.636 12.933 5.258 -3.489 -0.894 C20 V9Q 5
V9Q C21 C6 C 0 1 Y N N 39.583 17.230 11.790 4.496 -2.473 -1.329 C21 V9Q 6
V9Q C22 C7 C 0 1 Y N N 39.772 18.637 12.092 4.298 -1.570 -0.193 C22 V9Q 7
V9Q C26 C8 C 0 1 N N N 47.242 16.765 9.829 -4.432 -1.442 0.055 C26 V9Q 8
V9Q C28 C9 C 0 1 N N N 49.025 16.044 11.589 -6.586 -2.189 1.379 C28 V9Q 9
V9Q C01 C10 C 0 1 N N N 39.611 15.085 5.440 -1.746 5.542 0.696 C01 V9Q 10
V9Q N02 N1 N 0 1 N N N 40.148 16.024 6.418 -1.531 4.121 0.411 N02 V9Q 11
V9Q C03 C11 C 0 1 N N N 41.418 15.979 6.811 -0.300 3.676 0.089 C03 V9Q 12
V9Q O04 O1 O 0 1 N N N 42.218 15.157 6.360 0.632 4.455 0.035 O04 V9Q 13
V9Q C05 C12 C 0 1 Y N N 41.842 16.978 7.856 -0.084 2.245 -0.198 C05 V9Q 14
V9Q C06 C13 C 0 1 Y N N 43.177 16.946 8.268 -1.152 1.356 -0.136 C06 V9Q 15
V9Q C07 C14 C 0 1 Y N N 43.642 17.825 9.250 -0.950 0.004 -0.410 C07 V9Q 16
V9Q C08 C15 C 0 1 Y N N 42.764 18.753 9.800 0.329 -0.450 -0.751 C08 V9Q 17
V9Q C09 C16 C 0 1 Y N N 41.435 18.795 9.405 1.381 0.430 -0.814 C09 V9Q 18
V9Q C11 C17 C 0 1 N N N 39.108 19.082 9.085 3.305 1.696 -1.415 C11 V9Q 19
V9Q O12 O2 O 0 1 N N N 39.636 18.081 8.149 2.375 2.462 -0.632 O12 V9Q 20
V9Q C14 C18 C 0 1 Y N N 40.103 19.780 11.333 3.599 -0.374 -0.014 C14 V9Q 21
V9Q C16 C19 C 0 1 Y N N 39.886 21.151 13.363 4.295 -0.320 2.274 C16 V9Q 22
V9Q C18 C20 C 0 1 Y N N 39.529 18.780 13.484 4.992 -2.145 0.887 C18 V9Q 23
V9Q N19 N2 N 0 1 Y N N 39.226 17.539 13.969 5.564 -3.310 0.428 N19 V9Q 24
V9Q C23 C21 C 0 1 N N N 45.065 17.859 9.718 -2.080 -0.943 -0.342 C23 V9Q 25
V9Q O24 O3 O 0 1 N N N 45.498 18.839 10.330 -1.901 -2.121 -0.581 O24 V9Q 26
V9Q N25 N3 N 0 1 N N N 45.840 16.805 9.448 -3.311 -0.502 -0.013 N25 V9Q 27
V9Q C27 C22 C 0 1 N N R 47.681 15.821 10.908 -5.611 -1.068 0.955 C27 V9Q 28
V9Q O29 O4 O 0 1 N N N 49.918 16.398 10.529 -7.558 -2.256 0.313 O29 V9Q 29
V9Q C30 C23 C 0 1 N N N 49.527 15.625 9.387 -6.798 -2.100 -0.905 C30 V9Q 30
V9Q C31 C24 C 0 1 N N S 48.013 15.538 9.473 -5.754 -1.008 -0.582 C31 V9Q 31
V9Q H1 H1 H 0 1 N N N 40.475 20.711 9.446 2.954 -0.363 -2.066 H1 V9Q 32
V9Q H2 H2 H 0 1 N N N 40.472 21.893 11.435 3.066 1.165 1.344 H2 V9Q 33
V9Q H3 H3 H 0 1 N N N 39.470 20.120 15.198 5.522 -1.928 2.957 H3 V9Q 34
V9Q H4 H4 H 0 1 N N N 39.065 15.580 13.036 5.582 -4.324 -1.497 H4 V9Q 35
V9Q H5 H5 H 0 1 N N N 39.681 16.759 10.823 4.104 -2.346 -2.327 H5 V9Q 36
V9Q H6 H6 H 0 1 N N N 47.796 17.714 9.770 -4.165 -2.497 -0.011 H6 V9Q 37
V9Q H7 H7 H 0 1 N N N 49.363 15.125 12.090 -6.057 -3.138 1.470 H7 V9Q 38
V9Q H8 H8 H 0 1 N N N 48.956 16.858 12.325 -7.071 -1.935 2.321 H8 V9Q 39
V9Q H9 H9 H 0 1 N N N 38.547 15.305 5.265 -1.472 6.133 -0.178 H9 V9Q 40
V9Q H10 H10 H 0 1 N N N 40.166 15.183 4.495 -2.796 5.710 0.935 H10 V9Q 41
V9Q H11 H11 H 0 1 N N N 39.715 14.059 5.822 -1.128 5.839 1.544 H11 V9Q 42
V9Q H12 H12 H 0 1 N N N 39.544 16.722 6.804 -2.275 3.500 0.454 H12 V9Q 43
V9Q H13 H13 H 0 1 N N N 43.857 16.234 7.823 -2.137 1.712 0.124 H13 V9Q 44
V9Q H14 H14 H 0 1 N N N 43.121 19.450 10.544 0.489 -1.497 -0.966 H14 V9Q 45
V9Q H15 H15 H 0 1 N N N 38.570 19.865 8.530 4.324 1.845 -1.059 H15 V9Q 46
V9Q H16 H16 H 0 1 N N N 38.422 18.601 9.798 3.226 1.949 -2.472 H16 V9Q 47
V9Q H17 H17 H 0 1 N N N 39.874 22.131 13.816 4.291 0.177 3.232 H17 V9Q 48
V9Q H18 H18 H 0 1 N N N 39.011 17.323 14.921 6.104 -3.914 0.962 H18 V9Q 49
V9Q H19 H19 H 0 1 N N N 45.444 16.021 8.970 -3.454 0.438 0.178 H19 V9Q 50
V9Q H20 H20 H 0 1 N N N 46.928 15.201 11.416 -5.553 -0.180 1.585 H20 V9Q 51
V9Q H21 H21 H 0 1 N N N 49.975 14.621 9.427 -6.301 -3.035 -1.165 H21 V9Q 52
V9Q H22 H22 H 0 1 N N N 49.834 16.126 8.457 -7.447 -1.776 -1.719 H22 V9Q 53
V9Q H23 H23 H 0 1 N N N 47.501 14.712 8.958 -5.805 -0.073 -1.140 H23 V9Q 54
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V9Q C01 N02 SING N N 1
V9Q O04 C03 DOUB N N 2
V9Q N02 C03 SING N N 3
V9Q C03 C05 SING N N 4
V9Q C05 C06 DOUB Y N 5
V9Q C05 C13 SING Y N 6
V9Q O12 C13 SING N N 7
V9Q O12 C11 SING N N 8
V9Q C06 C07 SING Y N 9
V9Q C13 C09 DOUB Y N 10
V9Q C11 C10 SING N N 11
V9Q C07 C23 SING N N 12
V9Q C07 C08 DOUB Y N 13
V9Q C30 C31 SING N N 14
V9Q C30 O29 SING N N 15
V9Q C09 C08 SING Y N 16
V9Q C09 C10 SING N N 17
V9Q N25 C23 SING N N 18
V9Q N25 C26 SING N N 19
V9Q C31 C26 SING N N 20
V9Q C31 C27 SING N N 21
V9Q C23 O24 DOUB N N 22
V9Q C26 C27 SING N N 23
V9Q C10 C14 SING N N 24
V9Q O29 C28 SING N N 25
V9Q C27 C28 SING N N 26
V9Q C14 C15 DOUB Y N 27
V9Q C14 C22 SING Y N 28
V9Q C21 C22 SING Y N 29
V9Q C21 C20 DOUB Y N 30
V9Q C15 C16 SING Y N 31
V9Q C22 C18 DOUB Y N 32
V9Q C20 N19 SING Y N 33
V9Q C16 C17 DOUB Y N 34
V9Q C18 N19 SING Y N 35
V9Q C18 C17 SING Y N 36
V9Q C10 H1 SING N N 37
V9Q C15 H2 SING N N 38
V9Q C17 H3 SING N N 39
V9Q C20 H4 SING N N 40
V9Q C21 H5 SING N N 41
V9Q C26 H6 SING N N 42
V9Q C28 H7 SING N N 43
V9Q C28 H8 SING N N 44
V9Q C01 H9 SING N N 45
V9Q C01 H10 SING N N 46
V9Q C01 H11 SING N N 47
V9Q N02 H12 SING N N 48
V9Q C06 H13 SING N N 49
V9Q C08 H14 SING N N 50
V9Q C11 H15 SING N N 51
V9Q C11 H16 SING N N 52
V9Q C16 H17 SING N N 53
V9Q N19 H18 SING N N 54
V9Q N25 H19 SING N N 55
V9Q C27 H20 SING N N 56
V9Q C30 H21 SING N N 57
V9Q C30 H22 SING N N 58
V9Q C31 H23 SING N N 59
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V9Q InChI InChI 1.03 "InChI=1S/C24H23N3O4/c1-25-24(29)16-8-12(23(28)27-21-18-9-30-10-19(18)21)7-15-17(11-31-22(15)16)13-3-2-4-20-14(13)5-6-26-20/h2-8,17-19,21,26H,9-11H2,1H3,(H,25,29)(H,27,28)/t17-,18-,19+,21+/m0/s1"
V9Q InChIKey InChI 1.03 MXVFNUYYLNWAFZ-CTAFRAEOSA-N
V9Q SMILES_CANONICAL CACTVS 3.385 "CNC(=O)c1cc(cc2[C@@H](COc12)c3cccc4[nH]ccc34)C(=O)NC5[C@@H]6COC[C@H]56"
V9Q SMILES CACTVS 3.385 "CNC(=O)c1cc(cc2[CH](COc12)c3cccc4[nH]ccc34)C(=O)NC5[CH]6COC[CH]56"
V9Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1cc(cc2c1OC[C@H]2c3cccc4c3cc[nH]4)C(=O)NC5[C@H]6[C@@H]5COC6"
V9Q SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1cc(cc2c1OCC2c3cccc4c3cc[nH]4)C(=O)NC5C6C5COC6"
#
_pdbx_chem_comp_identifier.comp_id V9Q
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(3~{S})-3-(1~{H}-indol-4-yl)-~{N}7-methyl-~{N}5-[(1~{R},5~{S})-3-oxabicyclo[3.1.0]hexan-6-yl]-2,3-dihydro-1-benzofuran-5,7-dicarboxamide"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id V9Q
_pdbx_chem_comp_synonyms.name "N5-((1R,5S,6r)-3-oxabicyclo[3.1.0]hexan-6-yl)-3-(1H-indol-4-yl)-N7-methyl-2,3-dihydrobenzofuran-5,7-dicarboxamide"
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V9Q "Create component" 2021-05-02 PDBE
V9Q "Initial release" 2021-07-28 RCSB
##