data_V9V # _chem_comp.id V9V _chem_comp.name "N-(5-{3-[(1S,7R,8R,9S)-4-amino-2-oxo-7lambda~4~-thia-3,5-diazatetracyclo[4.3.0.0~1,7~.0~7,9~]nona-3,5-dien-8-yl]propyl}thiophene-2-carbonyl)-L-glutamic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 N4 O6 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-21 _chem_comp.pdbx_modified_date 2021-03-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 464.515 _chem_comp.one_letter_code ? _chem_comp.three_letter_code V9V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7JG4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal V9V C8 C1 C 0 1 Y N N -25.309 12.680 27.447 ? ? ? C8 V9V 1 V9V C6 C2 C 0 1 Y N N -27.120 13.039 28.717 ? ? ? C6 V9V 2 V9V N1 N1 N 0 1 N N N -25.595 10.398 26.806 ? ? ? N1 V9V 3 V9V C2 C3 C 0 1 N N N -24.433 10.481 26.101 ? ? ? C2 V9V 4 V9V N3 N2 N 0 1 N N N -23.700 11.579 26.032 ? ? ? N3 V9V 5 V9V C4 C4 C 0 1 N N N -24.065 12.710 26.672 ? ? ? C4 V9V 6 V9V C7 C5 C 0 1 Y N N -26.023 13.663 28.250 ? ? ? C7 V9V 7 V9V C13 C6 C 0 1 Y N N -25.077 11.186 33.846 ? ? ? C13 V9V 8 V9V C14 C7 C 0 1 Y N N -24.049 12.050 33.586 ? ? ? C14 V9V 9 V9V C15 C8 C 0 1 Y N N -24.404 13.037 32.699 ? ? ? C15 V9V 10 V9V C16 C9 C 0 1 Y N N -25.668 12.970 32.255 ? ? ? C16 V9V 11 V9V C17 C10 C 0 1 N N N -25.041 10.025 34.728 ? ? ? C17 V9V 12 V9V C20 C11 C 0 1 N N S -26.262 8.077 35.672 ? ? ? C20 V9V 13 V9V C21 C12 C 0 1 N N N -27.266 8.356 36.798 ? ? ? C21 V9V 14 V9V C22 C13 C 0 1 N N N -28.326 7.258 36.889 ? ? ? C22 V9V 15 V9V C23 C14 C 0 1 N N N -29.675 7.891 37.122 ? ? ? C23 V9V 16 V9V C26 C15 C 0 1 N N N -26.707 6.902 34.828 ? ? ? C26 V9V 17 V9V C29 C16 C 0 1 N N N -28.150 13.693 29.602 ? ? ? C29 V9V 18 V9V C30 C17 C 0 1 N N N -27.754 13.493 31.068 ? ? ? C30 V9V 19 V9V C31 C18 C 0 1 N N N -26.301 13.922 31.280 ? ? ? C31 V9V 20 V9V C9 C19 C 0 1 Y N N -26.061 11.498 27.490 ? ? ? C9 V9V 21 V9V N11 N3 N 0 1 N N N -23.998 9.371 25.432 ? ? ? N11 V9V 22 V9V N19 N4 N 0 1 N N N -26.163 9.275 34.827 ? ? ? N19 V9V 23 V9V O10 O1 O 0 1 N N N -23.386 13.730 26.614 ? ? ? O10 V9V 24 V9V O18 O2 O 0 1 N N N -24.019 9.749 35.329 ? ? ? O18 V9V 25 V9V O24 O3 O 0 1 N N N -30.666 7.390 36.639 ? ? ? O24 V9V 26 V9V O25 O4 O 0 1 N N N -29.772 9.011 37.860 ? ? ? O25 V9V 27 V9V O27 O5 O 0 1 N N N -27.666 6.995 34.096 ? ? ? O27 V9V 28 V9V O28 O6 O 0 1 N N N -26.036 5.741 34.871 ? ? ? O28 V9V 29 V9V S12 S1 S 0 1 Y N N -26.505 11.650 32.941 ? ? ? S12 V9V 30 V9V S5 S2 S 0 1 Y N N -27.154 11.738 28.261 ? ? ? S5 V9V 31 V9V H2 H2 H 0 1 N N N -25.731 14.686 28.434 ? ? ? H2 V9V 32 V9V H3 H3 H 0 1 N N N -23.068 11.966 34.029 ? ? ? H3 V9V 33 V9V H4 H4 H 0 1 N N N -23.717 13.808 32.383 ? ? ? H4 V9V 34 V9V H5 H5 H 0 1 N N N -25.281 7.852 36.116 ? ? ? H5 V9V 35 V9V H6 H6 H 0 1 N N N -26.725 8.410 37.754 ? ? ? H6 V9V 36 V9V H7 H7 H 0 1 N N N -27.763 9.318 36.603 ? ? ? H7 V9V 37 V9V H8 H8 H 0 1 N N N -28.345 6.686 35.950 ? ? ? H8 V9V 38 V9V H9 H9 H 0 1 N N N -28.087 6.583 37.724 ? ? ? H9 V9V 39 V9V H10 H10 H 0 1 N N N -28.198 14.769 29.377 ? ? ? H10 V9V 40 V9V H11 H11 H 0 1 N N N -29.134 13.236 29.421 ? ? ? H11 V9V 41 V9V H12 H12 H 0 1 N N N -28.410 14.100 31.709 ? ? ? H12 V9V 42 V9V H13 H13 H 0 1 N N N -27.863 12.431 31.333 ? ? ? H13 V9V 43 V9V H14 H14 H 0 1 N N N -26.270 14.945 31.684 ? ? ? H14 V9V 44 V9V H15 H15 H 0 1 N N N -25.760 13.889 30.323 ? ? ? H15 V9V 45 V9V H16 H16 H 0 1 N N N -24.530 8.525 25.468 ? ? ? H16 V9V 46 V9V H17 H17 H 0 1 N N N -23.148 9.405 24.907 ? ? ? H17 V9V 47 V9V H18 H18 H 0 1 N N N -26.966 9.550 34.298 ? ? ? H18 V9V 48 V9V H19 H19 H 0 1 N N N -30.681 9.282 37.907 ? ? ? H19 V9V 49 V9V H20 H20 H 0 1 N N N -26.441 5.119 34.279 ? ? ? H20 V9V 50 V9V H1 H1 H 0 1 N N N -22.857 11.572 25.494 ? ? ? H1 V9V 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal V9V C8 C4 SING N N 1 V9V C8 C7 SING Y N 2 V9V C8 C9 DOUB Y N 3 V9V C6 C7 DOUB Y N 4 V9V C6 C29 SING N N 5 V9V C6 S5 SING Y N 6 V9V N1 C2 DOUB N N 7 V9V N1 C9 SING N N 8 V9V C2 N3 SING N N 9 V9V C2 N11 SING N N 10 V9V N3 C4 SING N N 11 V9V C4 O10 DOUB N N 12 V9V C13 C14 DOUB Y N 13 V9V C13 C17 SING N N 14 V9V C13 S12 SING Y N 15 V9V C14 C15 SING Y N 16 V9V C15 C16 DOUB Y N 17 V9V C16 C31 SING N N 18 V9V C16 S12 SING Y N 19 V9V C17 N19 SING N N 20 V9V C17 O18 DOUB N N 21 V9V C20 C21 SING N N 22 V9V C20 C26 SING N N 23 V9V C20 N19 SING N N 24 V9V C21 C22 SING N N 25 V9V C22 C23 SING N N 26 V9V C23 O24 DOUB N N 27 V9V C23 O25 SING N N 28 V9V C26 O27 DOUB N N 29 V9V C26 O28 SING N N 30 V9V C29 C30 SING N N 31 V9V C30 C31 SING N N 32 V9V C9 S5 SING Y N 33 V9V C7 H2 SING N N 34 V9V C14 H3 SING N N 35 V9V C15 H4 SING N N 36 V9V C20 H5 SING N N 37 V9V C21 H6 SING N N 38 V9V C21 H7 SING N N 39 V9V C22 H8 SING N N 40 V9V C22 H9 SING N N 41 V9V C29 H10 SING N N 42 V9V C29 H11 SING N N 43 V9V C30 H12 SING N N 44 V9V C30 H13 SING N N 45 V9V C31 H14 SING N N 46 V9V C31 H15 SING N N 47 V9V N11 H16 SING N N 48 V9V N11 H17 SING N N 49 V9V N19 H18 SING N N 50 V9V O25 H19 SING N N 51 V9V O28 H20 SING N N 52 V9V N3 H1 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor V9V SMILES ACDLabs 12.01 "c21C(NC(=Nc1sc(c2)CCCc3ccc(C(NC(CCC(=O)O)C(=O)O)=O)s3)N)=O" V9V InChI InChI 1.03 "InChI=1S/C19H20N4O6S2/c20-19-22-15(26)11-8-10(31-17(11)23-19)3-1-2-9-4-6-13(30-9)16(27)21-12(18(28)29)5-7-14(24)25/h4,6,8,12H,1-3,5,7H2,(H,21,27)(H,24,25)(H,28,29)(H3,20,22,23,26)/t12-/m0/s1" V9V InChIKey InChI 1.03 VCNJYHGDMDELAI-LBPRGKRZSA-N V9V SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2sc(CCCc3sc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cc2C(=O)N1" V9V SMILES CACTVS 3.385 "NC1=Nc2sc(CCCc3sc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)cc2C(=O)N1" V9V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(sc1CCCc2cc3c(s2)N=C(NC3=O)N)C(=O)N[C@@H](CCC(=O)O)C(=O)O" V9V SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(sc1CCCc2cc3c(s2)N=C(NC3=O)N)C(=O)NC(CCC(=O)O)C(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier V9V "SYSTEMATIC NAME" ACDLabs 12.01 "N-{5-[3-(2-amino-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-6-yl)propyl]thiophene-2-carbonyl}-L-glutamic acid" V9V "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[5-[3-(2-azanyl-4-oxidanylidene-3~{H}-thieno[2,3-d]pyrimidin-6-yl)propyl]thiophen-2-yl]carbonylamino]pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site V9V "Create component" 2020-07-21 RCSB V9V "Modify aromatic_flag" 2020-07-21 RCSB V9V "Initial release" 2021-03-31 RCSB ##