data_VA9 # _chem_comp.id VA9 _chem_comp.name "7-[5-(2-acetamidoethyl)-2-oxidanyl-phenyl]-3,5,6,8-tetrakis(oxidanyl)-9,10-bis(oxidanylidene)anthracene-1,2-dicarboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H19 N O12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-11 _chem_comp.pdbx_modified_date 2023-08-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 537.429 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VA9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8JYJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VA9 CAA C1 C 0 1 Y N N 10.169 15.231 3.386 -5.253 1.119 -0.273 CAA VA9 1 VA9 CAB C2 C 0 1 Y N N 10.285 14.670 4.650 -5.647 0.015 -1.039 CAB VA9 2 VA9 CAC C3 C 0 1 Y N N 11.459 14.183 5.155 -4.781 -1.060 -1.217 CAC VA9 3 VA9 CAD C4 C 0 1 Y N N 12.594 14.251 4.388 -3.520 -1.046 -0.635 CAD VA9 4 VA9 CAE C5 C 0 1 Y N N 12.573 14.789 3.087 -3.112 0.057 0.139 CAE VA9 5 VA9 CAF C6 C 0 1 Y N N 11.346 15.360 2.570 -3.978 1.141 0.320 CAF VA9 6 VA9 CAG C7 C 0 1 N N N 13.729 13.728 5.001 -2.595 -2.189 -0.823 CAG VA9 7 VA9 CAH C8 C 0 1 Y N N 14.935 13.733 4.343 -1.176 -2.031 -0.468 CAH VA9 8 VA9 CAI C9 C 0 1 Y N N 14.975 14.262 3.085 -0.768 -0.922 0.310 CAI VA9 9 VA9 CAJ C10 C 0 1 N N N 13.852 14.789 2.462 -1.768 0.062 0.755 CAJ VA9 10 VA9 CAK C11 C 0 1 Y N N 16.110 13.230 4.881 -0.231 -2.967 -0.895 CAK VA9 11 VA9 CAL C12 C 0 1 Y N N 17.321 13.310 4.199 1.114 -2.806 -0.552 CAL VA9 12 VA9 CAM C13 C 0 1 Y N N 17.379 13.706 2.858 1.519 -1.715 0.216 CAM VA9 13 VA9 CAN C14 C 0 1 Y N N 16.181 14.284 2.405 0.576 -0.768 0.649 CAN VA9 14 VA9 CAQ C15 C 0 1 N N N 11.255 15.887 1.248 -3.555 2.305 1.132 CAQ VA9 15 VA9 CAT C16 C 0 1 N N N 8.829 15.642 3.172 -6.172 2.260 -0.094 CAT VA9 16 VA9 CBA C17 C 0 1 Y N N 18.549 13.899 2.092 2.946 -1.555 0.575 CBA VA9 17 VA9 CBB C18 C 0 1 Y N N 19.812 14.017 2.665 3.803 -0.838 -0.260 CBB VA9 18 VA9 CBC C19 C 0 1 Y N N 20.957 14.152 1.882 5.131 -0.691 0.080 CBC VA9 19 VA9 CBD C20 C 0 1 Y N N 20.896 14.014 0.505 5.619 -1.253 1.248 CBD VA9 20 VA9 CBE C21 C 0 1 Y N N 19.674 13.781 -0.090 4.779 -1.965 2.083 CBE VA9 21 VA9 CBF C22 C 0 1 Y N N 18.542 13.682 0.701 3.441 -2.116 1.758 CBF VA9 22 VA9 CBG C23 C 0 1 N N N 22.186 14.413 2.465 6.056 0.083 -0.823 CBG VA9 23 VA9 CBH C24 C 0 1 N N N 22.289 15.945 2.617 6.052 1.557 -0.414 CBH VA9 24 VA9 CBJ C25 C 0 1 N N N 21.137 17.395 0.957 7.108 3.637 -1.118 CBJ VA9 25 VA9 CBL C26 C 0 1 N N N 20.052 17.562 2.023 8.033 4.412 -2.022 CBL VA9 26 VA9 NBI N1 N 0 1 N N N 22.178 16.611 1.302 6.951 2.310 -1.292 NBI VA9 27 VA9 OAO O1 O 0 1 N N N 16.132 14.827 1.160 0.972 0.292 1.395 OAO VA9 28 VA9 OAP O2 O 0 1 N N N 14.071 15.227 1.341 -1.490 0.872 1.620 OAP VA9 29 VA9 OAR O3 O 0 1 N N N 10.271 16.502 0.821 -3.799 2.326 2.456 OAR VA9 30 VA9 OAS O4 O 0 1 N N N 12.023 15.538 0.338 -2.989 3.240 0.603 OAS VA9 31 VA9 OAU O5 O 0 1 N N N 8.406 16.247 2.172 -6.948 2.274 0.840 OAU VA9 32 VA9 OAV O6 O 0 1 N N N 7.972 15.363 4.035 -6.151 3.286 -0.967 OAV VA9 33 VA9 OAW O7 O 0 1 N N N 9.158 14.603 5.398 -6.875 -0.006 -1.610 OAW VA9 34 VA9 OAX O8 O 0 1 N N N 13.654 13.257 6.128 -3.005 -3.245 -1.265 OAX VA9 35 VA9 OAY O9 O 0 1 N N N 16.087 12.700 6.134 -0.619 -4.031 -1.641 OAY VA9 36 VA9 OAZ O10 O 0 1 N N N 18.402 12.736 4.796 2.031 -3.717 -0.968 OAZ VA9 37 VA9 OBK O11 O 0 1 N N N 21.027 17.949 -0.137 6.505 4.208 -0.234 OBK VA9 38 VA9 OBM O12 O 0 1 N N N 17.351 13.452 0.093 2.615 -2.816 2.578 OBM VA9 39 VA9 H1 H1 H 0 1 N N N 11.492 13.751 6.144 -5.091 -1.909 -1.809 H1 VA9 40 VA9 H2 H2 H 0 1 N N N 19.907 14.004 3.741 3.426 -0.400 -1.172 H2 VA9 41 VA9 H3 H3 H 0 1 N N N 21.792 14.088 -0.094 6.660 -1.134 1.508 H3 VA9 42 VA9 H4 H4 H 0 1 N N N 19.601 13.677 -1.162 5.166 -2.401 2.992 H4 VA9 43 VA9 H5 H5 H 0 1 N N N 22.248 13.929 3.451 7.067 -0.315 -0.736 H5 VA9 44 VA9 H6 H6 H 0 1 N N N 22.997 14.041 1.822 5.717 -0.009 -1.855 H6 VA9 45 VA9 H7 H7 H 0 1 N N N 23.259 16.198 3.069 5.041 1.956 -0.501 H7 VA9 46 VA9 H8 H8 H 0 1 N N N 21.477 16.298 3.270 6.391 1.649 0.618 H8 VA9 47 VA9 H9 H9 H 0 1 N N N 19.252 18.210 1.635 7.477 4.775 -2.885 H9 VA9 48 VA9 H10 H10 H 0 1 N N N 19.634 16.577 2.278 8.450 5.258 -1.475 H10 VA9 49 VA9 H11 H11 H 0 1 N N N 20.489 18.019 2.923 8.841 3.762 -2.357 H11 VA9 50 VA9 H12 H12 H 0 1 N N N 22.911 16.473 0.636 7.433 1.853 -1.999 H12 VA9 51 VA9 H13 H13 H 0 1 N N N 15.245 15.112 0.973 1.220 1.068 0.876 H13 VA9 52 VA9 H14 H14 H 0 1 N N N 10.326 16.570 -0.125 -3.504 3.107 2.944 H14 VA9 53 VA9 H15 H15 H 0 1 N N N 7.122 15.680 3.752 -6.771 4.011 -0.808 H15 VA9 54 VA9 H16 H16 H 0 1 N N N 9.357 14.204 6.237 -6.903 0.373 -2.500 H16 VA9 55 VA9 H17 H17 H 0 1 N N N 15.205 12.751 6.484 -0.600 -3.870 -2.595 H17 VA9 56 VA9 H18 H18 H 0 1 N N N 18.193 12.530 5.700 2.428 -3.511 -1.825 H18 VA9 57 VA9 H19 H19 H 0 1 N N N 16.664 13.407 0.748 2.185 -2.277 3.256 H19 VA9 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VA9 OBK CBJ DOUB N N 1 VA9 CBE CBD DOUB Y N 2 VA9 CBE CBF SING Y N 3 VA9 OBM CBF SING N N 4 VA9 OAS CAQ DOUB N N 5 VA9 CBD CBC SING Y N 6 VA9 CBF CBA DOUB Y N 7 VA9 OAR CAQ SING N N 8 VA9 CBJ NBI SING N N 9 VA9 CBJ CBL SING N N 10 VA9 OAO CAN SING N N 11 VA9 CAQ CAF SING N N 12 VA9 NBI CBH SING N N 13 VA9 OAP CAJ DOUB N N 14 VA9 CBC CBG SING N N 15 VA9 CBC CBB DOUB Y N 16 VA9 CBA CBB SING Y N 17 VA9 CBA CAM SING N N 18 VA9 OAU CAT DOUB N N 19 VA9 CAN CAM DOUB Y N 20 VA9 CAN CAI SING Y N 21 VA9 CAJ CAI SING N N 22 VA9 CAJ CAE SING N N 23 VA9 CBG CBH SING N N 24 VA9 CAF CAE DOUB Y N 25 VA9 CAF CAA SING Y N 26 VA9 CAM CAL SING Y N 27 VA9 CAI CAH DOUB Y N 28 VA9 CAE CAD SING Y N 29 VA9 CAT CAA SING N N 30 VA9 CAT OAV SING N N 31 VA9 CAA CAB DOUB Y N 32 VA9 CAL OAZ SING N N 33 VA9 CAL CAK DOUB Y N 34 VA9 CAH CAK SING Y N 35 VA9 CAH CAG SING N N 36 VA9 CAD CAG SING N N 37 VA9 CAD CAC DOUB Y N 38 VA9 CAB CAC SING Y N 39 VA9 CAB OAW SING N N 40 VA9 CAK OAY SING N N 41 VA9 CAG OAX DOUB N N 42 VA9 CAC H1 SING N N 43 VA9 CBB H2 SING N N 44 VA9 CBD H3 SING N N 45 VA9 CBE H4 SING N N 46 VA9 CBG H5 SING N N 47 VA9 CBG H6 SING N N 48 VA9 CBH H7 SING N N 49 VA9 CBH H8 SING N N 50 VA9 CBL H9 SING N N 51 VA9 CBL H10 SING N N 52 VA9 CBL H11 SING N N 53 VA9 NBI H12 SING N N 54 VA9 OAO H13 SING N N 55 VA9 OAR H14 SING N N 56 VA9 OAV H15 SING N N 57 VA9 OAW H16 SING N N 58 VA9 OAY H17 SING N N 59 VA9 OAZ H18 SING N N 60 VA9 OBM H19 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VA9 InChI InChI 1.06 "InChI=1S/C26H19NO12/c1-8(28)27-5-4-9-2-3-12(29)10(6-9)15-22(33)19-18(24(35)23(15)34)20(31)11-7-13(30)16(25(36)37)17(26(38)39)14(11)21(19)32/h2-3,6-7,29-30,33-35H,4-5H2,1H3,(H,27,28)(H,36,37)(H,38,39)" VA9 InChIKey InChI 1.06 IHLWXZNPOVMUFQ-UHFFFAOYSA-N VA9 SMILES_CANONICAL CACTVS 3.385 "CC(=O)NCCc1ccc(O)c(c1)c2c(O)c(O)c3C(=O)c4cc(O)c(C(O)=O)c(C(O)=O)c4C(=O)c3c2O" VA9 SMILES CACTVS 3.385 "CC(=O)NCCc1ccc(O)c(c1)c2c(O)c(O)c3C(=O)c4cc(O)c(C(O)=O)c(C(O)=O)c4C(=O)c3c2O" VA9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCc1ccc(c(c1)c2c(c3c(c(c2O)O)C(=O)c4cc(c(c(c4C3=O)C(=O)O)C(=O)O)O)O)O" VA9 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NCCc1ccc(c(c1)c2c(c3c(c(c2O)O)C(=O)c4cc(c(c(c4C3=O)C(=O)O)C(=O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id VA9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "7-[5-(2-acetamidoethyl)-2-oxidanyl-phenyl]-3,5,6,8-tetrakis(oxidanyl)-9,10-bis(oxidanylidene)anthracene-1,2-dicarboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VA9 "Create component" 2023-07-11 PDBJ VA9 "Initial release" 2023-08-16 RCSB #