data_VAD # _chem_comp.id VAD _chem_comp.name DEAMINOHYDROXYVALINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H10 O3" _chem_comp.mon_nstd_parent_comp_id VAL _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 118.131 _chem_comp.one_letter_code V _chem_comp.three_letter_code VAD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CWO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VAD CA CA C 0 1 N N R Y N N -3.963 63.781 50.900 -0.482 -0.436 0.101 CA VAD 1 VAD CB CB C 0 1 N N N N N N -5.409 64.391 50.971 0.230 0.380 1.180 CB VAD 2 VAD CG1 CG1 C 0 1 N N N N N N -6.434 63.327 51.356 -0.323 0.002 2.555 CG1 VAD 3 VAD CG2 CG2 C 0 1 N N N N N N -5.466 65.562 51.950 1.731 0.083 1.135 CG2 VAD 4 VAD C C C 0 1 N N N Y N Y -3.274 63.704 52.263 0.062 -0.064 -1.253 C VAD 5 VAD O O O 0 1 N N N Y N Y -2.617 64.653 52.680 -0.672 0.391 -2.096 O VAD 6 VAD OXT OXT O 0 1 N Y N Y N Y -3.417 62.571 52.945 1.366 -0.238 -1.523 OXT VAD 7 VAD OE OE O 0 1 N N N Y Y N -3.263 64.687 49.988 -1.884 -0.159 0.142 OE VAD 8 VAD HA HA H 0 1 N N N Y N N -3.972 62.721 50.552 -0.316 -1.498 0.280 HA VAD 9 VAD HB HB H 0 1 N N N N N N -5.662 64.772 49.954 0.065 1.442 1.001 HB VAD 10 VAD HG11 1HG1 H 0 0 N N N N N N -7.460 63.759 51.406 0.185 0.584 3.324 HG11 VAD 11 VAD HG12 2HG1 H 0 0 N N N N N N -6.391 62.448 50.670 -1.391 0.213 2.587 HG12 VAD 12 VAD HG13 3HG1 H 0 0 N N N N N N -6.157 62.814 52.306 -0.157 -1.060 2.734 HG13 VAD 13 VAD HG21 1HG2 H 0 0 N N N N N N -6.492 65.994 52.000 1.897 -0.978 1.314 HG21 VAD 14 VAD HG22 2HG2 H 0 0 N N N N N N -5.093 65.270 52.959 2.125 0.353 0.155 HG22 VAD 15 VAD HG23 3HG2 H 0 0 N N N N N N -4.704 66.338 51.705 2.239 0.665 1.904 HG23 VAD 16 VAD HXT HXT H 0 1 N Y N Y N Y -2.989 62.523 53.791 1.716 0.000 -2.392 HXT VAD 17 VAD HOE HOE H 0 1 N Y N Y Y N -2.388 64.318 49.945 -1.986 0.788 -0.020 HOE VAD 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VAD CA CB SING N N 1 VAD CA C SING N N 2 VAD CA OE SING N N 3 VAD CA HA SING N N 4 VAD CB CG1 SING N N 5 VAD CB CG2 SING N N 6 VAD CB HB SING N N 7 VAD CG1 HG11 SING N N 8 VAD CG1 HG12 SING N N 9 VAD CG1 HG13 SING N N 10 VAD CG2 HG21 SING N N 11 VAD CG2 HG22 SING N N 12 VAD CG2 HG23 SING N N 13 VAD C O DOUB N N 14 VAD C OXT SING N N 15 VAD OXT HXT SING N N 16 VAD OE HOE SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VAD SMILES ACDLabs 10.04 "O=C(O)C(O)C(C)C" VAD SMILES_CANONICAL CACTVS 3.341 "CC(C)[C@@H](O)C(O)=O" VAD SMILES CACTVS 3.341 "CC(C)[CH](O)C(O)=O" VAD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)[C@H](C(=O)O)O" VAD SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)C(C(=O)O)O" VAD InChI InChI 1.03 "InChI=1S/C5H10O3/c1-3(2)4(6)5(7)8/h3-4,6H,1-2H3,(H,7,8)/t4-/m1/s1" VAD InChIKey InChI 1.03 NGEWQZIDQIYUNV-SCSAIBSYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VAD "SYSTEMATIC NAME" ACDLabs 10.04 "(2R)-2-hydroxy-3-methylbutanoic acid" VAD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-hydroxy-3-methyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VAD "Create component" 1999-07-08 RCSB VAD "Modify descriptor" 2011-06-04 RCSB VAD "Modify backbone" 2023-11-03 PDBE VAD "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VAD _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #