data_VAQ # _chem_comp.id VAQ _chem_comp.name "4-[[(3S)-3-cyclopropyl-2-azaspiro[3.3]heptan-2-yl]methyl]-2-oxidanyl-N-[[(3R)-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H42 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-04 _chem_comp.pdbx_modified_date 2021-10-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 582.736 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VAQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OEK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VAQ C10 C1 C 0 1 N N N 43.417 -28.530 21.264 -6.859 0.465 0.780 C10 VAQ 1 VAQ C13 C2 C 0 1 N N N 41.274 -25.995 20.744 -8.769 -0.648 -1.882 C13 VAQ 2 VAQ C15 C3 C 0 1 N N N 40.669 -26.346 19.380 -8.804 0.797 -2.386 C15 VAQ 3 VAQ C17 C4 C 0 1 N N N 42.150 -24.919 23.602 -8.258 -3.437 -1.049 C17 VAQ 4 VAQ C20 C5 C 0 1 N N N 43.738 -26.795 22.952 -7.229 -1.936 0.897 C20 VAQ 5 VAQ C21 C6 C 0 1 Y N N 42.778 -30.407 22.820 -4.732 0.134 2.050 C21 VAQ 6 VAQ C22 C7 C 0 1 Y N N 43.082 -31.382 23.791 -3.367 0.318 2.214 C22 VAQ 7 VAQ C26 C8 C 0 1 N N N 45.033 -37.197 24.624 1.764 0.935 -1.884 C26 VAQ 8 VAQ C28 C9 C 0 1 N N N 42.777 -35.873 25.964 2.995 3.096 -0.399 C28 VAQ 9 VAQ C02 C10 C 0 1 N N R 44.256 -35.739 26.521 1.472 2.991 -0.500 C02 VAQ 10 VAQ C03 C11 C 0 1 N N N 44.405 -34.304 27.192 0.938 2.162 0.669 C03 VAQ 11 VAQ C05 C12 C 0 1 N N N 44.872 -32.589 25.314 -1.194 1.255 1.425 C05 VAQ 12 VAQ C06 C13 C 0 1 Y N N 44.458 -31.534 24.257 -2.646 1.053 1.262 C06 VAQ 13 VAQ C07 C14 C 0 1 Y N N 45.441 -30.698 23.684 -3.311 1.592 0.158 C07 VAQ 14 VAQ C08 C15 C 0 1 Y N N 45.143 -29.728 22.710 -4.668 1.400 0.012 C08 VAQ 15 VAQ C09 C16 C 0 1 Y N N 43.808 -29.594 22.277 -5.375 0.668 0.951 C09 VAQ 16 VAQ C12 C17 C 0 1 N N S 42.667 -26.180 21.226 -8.523 -0.869 -0.389 C12 VAQ 17 VAQ C14 C18 C 0 1 N N N 40.864 -24.900 19.784 -10.100 -0.013 -2.292 C14 VAQ 18 VAQ C16 C19 C 0 1 N N N 43.083 -25.484 22.531 -8.404 -2.342 0.006 C16 VAQ 19 VAQ C18 C20 C 0 1 N N N 42.831 -23.544 23.402 -9.756 -3.722 -0.838 C18 VAQ 20 VAQ C19 C21 C 0 1 N N N 43.850 -24.151 22.405 -9.598 -3.112 0.569 C19 VAQ 21 VAQ C25 C22 C 0 1 N N N 45.212 -35.869 25.350 1.098 2.312 -1.821 C25 VAQ 22 VAQ C27 C23 C 0 1 N N N 43.531 -37.493 24.204 3.279 1.099 -1.742 C27 VAQ 23 VAQ C30 C24 C 0 1 Y N N 41.468 -38.199 25.832 4.952 1.799 -0.243 C30 VAQ 24 VAQ C32 C25 C 0 1 Y N N 40.120 -39.069 27.545 6.860 3.015 0.198 C32 VAQ 25 VAQ C34 C26 C 0 1 Y N N 39.898 -40.111 25.426 7.077 0.731 -0.018 C34 VAQ 26 VAQ C36 C27 C 0 1 N N N 39.698 -41.484 23.092 7.277 -1.719 -0.254 C36 VAQ 27 VAQ C37 C28 C 0 1 Y N N 41.107 -42.364 22.837 8.350 -2.776 -0.197 C37 VAQ 28 VAQ C38 C29 C 0 1 Y N N 41.900 -42.772 23.945 8.653 -3.389 1.004 C38 VAQ 29 VAQ C39 C30 C 0 1 Y N N 43.096 -43.522 23.793 9.637 -4.358 1.056 C39 VAQ 30 VAQ C40 C31 C 0 1 Y N N 43.526 -43.893 22.508 10.319 -4.714 -0.092 C40 VAQ 31 VAQ C41 C32 C 0 1 Y N N 42.762 -43.523 21.385 10.016 -4.100 -1.293 C41 VAQ 32 VAQ C42 C33 C 0 1 Y N N 41.578 -42.769 21.554 9.028 -3.136 -1.347 C42 VAQ 33 VAQ C43 C34 C 0 1 Y N N 40.881 -39.161 24.947 5.709 0.631 -0.249 C43 VAQ 34 VAQ N04 N1 N 0 1 N N N 43.976 -33.261 26.223 -0.505 1.962 0.508 N04 VAQ 35 VAQ N11 N2 N 0 1 N N N 42.728 -27.477 22.037 -7.098 -0.760 0.005 N11 VAQ 36 VAQ N29 N3 N 0 1 N N N 42.493 -37.202 25.306 3.585 1.753 -0.463 N29 VAQ 37 VAQ N31 N4 N 0 1 Y N N 41.061 -38.169 27.132 5.561 2.962 -0.017 N31 VAQ 38 VAQ N33 N5 N 0 1 Y N N 39.539 -40.018 26.746 7.610 1.932 0.200 N33 VAQ 39 VAQ N35 N6 N 0 1 N N N 39.318 -41.107 24.530 7.874 -0.403 -0.014 N35 VAQ 40 VAQ O01 O1 O 0 1 N N N 44.531 -36.750 27.421 0.900 4.300 -0.457 O01 VAQ 41 VAQ O23 O2 O 0 1 N N N 42.095 -32.201 24.338 -2.733 -0.210 3.290 O23 VAQ 42 VAQ O24 O3 O 0 1 N N N 46.065 -32.907 25.420 -0.619 0.783 2.387 O24 VAQ 43 VAQ H1 H1 H 0 1 N N N 42.742 -28.952 20.505 -7.328 0.373 1.759 H1 VAQ 44 VAQ H2 H2 H 0 1 N N N 44.312 -28.121 20.772 -7.284 1.318 0.252 H2 VAQ 45 VAQ H3 H3 H 0 1 N N N 40.538 -26.121 21.552 -8.346 -1.402 -2.546 H3 VAQ 46 VAQ H4 H4 H 0 1 N N N 39.656 -26.769 19.319 -8.651 1.589 -1.654 H4 VAQ 47 VAQ H5 H5 H 0 1 N N N 41.299 -26.789 18.595 -8.404 0.992 -3.381 H5 VAQ 48 VAQ H6 H6 H 0 1 N N N 41.083 -24.942 23.336 -8.021 -3.058 -2.043 H6 VAQ 49 VAQ H7 H7 H 0 1 N N N 42.288 -25.355 24.603 -7.609 -4.257 -0.742 H7 VAQ 50 VAQ H8 H8 H 0 1 N N N 43.637 -27.042 24.019 -7.517 -1.684 1.918 H8 VAQ 51 VAQ H9 H9 H 0 1 N N N 44.789 -26.907 22.647 -6.383 -2.622 0.850 H9 VAQ 52 VAQ H10 H10 H 0 1 N N N 41.759 -30.278 22.488 -5.291 -0.431 2.781 H10 VAQ 53 VAQ H11 H11 H 0 1 N N N 45.374 -38.005 25.288 1.388 0.312 -1.072 H11 VAQ 54 VAQ H12 H12 H 0 1 N N N 45.652 -37.183 23.715 1.536 0.464 -2.840 H12 VAQ 55 VAQ H13 H13 H 0 1 N N N 42.612 -35.077 25.223 3.373 3.698 -1.224 H13 VAQ 56 VAQ H14 H14 H 0 1 N N N 42.077 -35.745 26.803 3.265 3.566 0.547 H14 VAQ 57 VAQ H15 H15 H 0 1 N N N 45.456 -34.136 27.471 1.439 1.194 0.688 H15 VAQ 58 VAQ H16 H16 H 0 1 N N N 43.774 -34.252 28.091 1.128 2.688 1.605 H16 VAQ 59 VAQ H17 H17 H 0 1 N N N 46.466 -30.808 24.007 -2.762 2.159 -0.579 H17 VAQ 60 VAQ H18 H18 H 0 1 N N N 45.921 -29.099 22.302 -5.181 1.817 -0.842 H18 VAQ 61 VAQ H19 H19 H 0 1 N N N 43.430 -26.120 20.436 -9.200 -0.295 0.244 H19 VAQ 62 VAQ H20 H20 H 0 1 N N N 41.634 -24.291 19.287 -10.552 -0.349 -3.225 H20 VAQ 63 VAQ H21 H21 H 0 1 N N N 39.990 -24.272 20.011 -10.799 0.248 -1.498 H21 VAQ 64 VAQ H22 H22 H 0 1 N N N 43.291 -23.140 24.316 -10.407 -3.144 -1.493 H22 VAQ 65 VAQ H23 H23 H 0 1 N N N 42.173 -22.784 22.956 -10.001 -4.785 -0.829 H23 VAQ 66 VAQ H24 H24 H 0 1 N N N 44.887 -24.182 22.772 -9.327 -3.841 1.333 H24 VAQ 67 VAQ H25 H25 H 0 1 N N N 43.830 -23.704 21.400 -10.429 -2.473 0.866 H25 VAQ 68 VAQ H26 H26 H 0 1 N N N 46.245 -35.803 25.723 1.445 2.923 -2.655 H26 VAQ 69 VAQ H27 H27 H 0 1 N N N 45.024 -35.048 24.643 0.016 2.197 -1.878 H27 VAQ 70 VAQ H28 H28 H 0 1 N N N 43.289 -36.870 23.330 3.755 0.119 -1.772 H28 VAQ 71 VAQ H29 H29 H 0 1 N N N 43.453 -38.555 23.930 3.656 1.711 -2.562 H29 VAQ 72 VAQ H30 H30 H 0 1 N N N 39.811 -39.029 28.579 7.323 3.974 0.377 H30 VAQ 73 VAQ H31 H31 H 0 1 N N N 39.794 -40.546 22.526 6.808 -1.731 -1.238 H31 VAQ 74 VAQ H32 H32 H 0 1 N N N 38.867 -42.076 22.682 6.526 -1.923 0.509 H32 VAQ 75 VAQ H33 H33 H 0 1 N N N 41.580 -42.501 24.940 8.120 -3.112 1.902 H33 VAQ 76 VAQ H34 H34 H 0 1 N N N 43.672 -43.806 24.661 9.874 -4.838 1.995 H34 VAQ 77 VAQ H35 H35 H 0 1 N N N 44.437 -44.459 22.382 11.089 -5.470 -0.051 H35 VAQ 78 VAQ H36 H36 H 0 1 N N N 43.080 -43.815 20.395 10.546 -4.381 -2.192 H36 VAQ 79 VAQ H37 H37 H 0 1 N N N 41.010 -42.490 20.679 8.791 -2.656 -2.286 H37 VAQ 80 VAQ H38 H38 H 0 1 N N N 41.176 -39.178 23.908 5.246 -0.328 -0.429 H38 VAQ 81 VAQ H39 H39 H 0 1 N N N 43.008 -33.010 26.200 -0.964 2.338 -0.260 H39 VAQ 82 VAQ H41 H41 H 0 1 N N N 38.355 -40.846 24.467 8.827 -0.326 0.149 H41 VAQ 83 VAQ H42 H42 H 0 1 N N N 43.941 -36.684 28.162 -0.065 4.310 -0.517 H42 VAQ 84 VAQ H43 H43 H 0 1 N N N 42.487 -32.791 24.971 -2.394 -1.104 3.148 H43 VAQ 85 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VAQ C15 C14 SING N N 1 VAQ C15 C13 SING N N 2 VAQ C14 C13 SING N N 3 VAQ C13 C12 SING N N 4 VAQ C12 N11 SING N N 5 VAQ C12 C16 SING N N 6 VAQ C10 N11 SING N N 7 VAQ C10 C09 SING N N 8 VAQ C41 C42 DOUB Y N 9 VAQ C41 C40 SING Y N 10 VAQ C42 C37 SING Y N 11 VAQ N11 C20 SING N N 12 VAQ C09 C08 DOUB Y N 13 VAQ C09 C21 SING Y N 14 VAQ C19 C16 SING N N 15 VAQ C19 C18 SING N N 16 VAQ C40 C39 DOUB Y N 17 VAQ C16 C20 SING N N 18 VAQ C16 C17 SING N N 19 VAQ C08 C07 SING Y N 20 VAQ C21 C22 DOUB Y N 21 VAQ C37 C36 SING N N 22 VAQ C37 C38 DOUB Y N 23 VAQ C36 N35 SING N N 24 VAQ C18 C17 SING N N 25 VAQ C07 C06 DOUB Y N 26 VAQ C22 C06 SING Y N 27 VAQ C22 O23 SING N N 28 VAQ C39 C38 SING Y N 29 VAQ C27 C26 SING N N 30 VAQ C27 N29 SING N N 31 VAQ C06 C05 SING N N 32 VAQ N35 C34 SING N N 33 VAQ C26 C25 SING N N 34 VAQ C43 C34 DOUB Y N 35 VAQ C43 C30 SING Y N 36 VAQ N29 C30 SING N N 37 VAQ N29 C28 SING N N 38 VAQ C05 O24 DOUB N N 39 VAQ C05 N04 SING N N 40 VAQ C25 C02 SING N N 41 VAQ C34 N33 SING Y N 42 VAQ C30 N31 DOUB Y N 43 VAQ C28 C02 SING N N 44 VAQ N04 C03 SING N N 45 VAQ C02 C03 SING N N 46 VAQ C02 O01 SING N N 47 VAQ N33 C32 DOUB Y N 48 VAQ N31 C32 SING Y N 49 VAQ C10 H1 SING N N 50 VAQ C10 H2 SING N N 51 VAQ C13 H3 SING N N 52 VAQ C15 H4 SING N N 53 VAQ C15 H5 SING N N 54 VAQ C17 H6 SING N N 55 VAQ C17 H7 SING N N 56 VAQ C20 H8 SING N N 57 VAQ C20 H9 SING N N 58 VAQ C21 H10 SING N N 59 VAQ C26 H11 SING N N 60 VAQ C26 H12 SING N N 61 VAQ C28 H13 SING N N 62 VAQ C28 H14 SING N N 63 VAQ C03 H15 SING N N 64 VAQ C03 H16 SING N N 65 VAQ C07 H17 SING N N 66 VAQ C08 H18 SING N N 67 VAQ C12 H19 SING N N 68 VAQ C14 H20 SING N N 69 VAQ C14 H21 SING N N 70 VAQ C18 H22 SING N N 71 VAQ C18 H23 SING N N 72 VAQ C19 H24 SING N N 73 VAQ C19 H25 SING N N 74 VAQ C25 H26 SING N N 75 VAQ C25 H27 SING N N 76 VAQ C27 H28 SING N N 77 VAQ C27 H29 SING N N 78 VAQ C32 H30 SING N N 79 VAQ C36 H31 SING N N 80 VAQ C36 H32 SING N N 81 VAQ C38 H33 SING N N 82 VAQ C39 H34 SING N N 83 VAQ C40 H35 SING N N 84 VAQ C41 H36 SING N N 85 VAQ C42 H37 SING N N 86 VAQ C43 H38 SING N N 87 VAQ N04 H39 SING N N 88 VAQ N35 H41 SING N N 89 VAQ O01 H42 SING N N 90 VAQ O23 H43 SING N N 91 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VAQ InChI InChI 1.03 "InChI=1S/C34H42N6O3/c41-28-16-25(19-40-21-33(12-4-13-33)31(40)26-9-10-26)8-11-27(28)32(42)36-20-34(43)14-5-15-39(22-34)30-17-29(37-23-38-30)35-18-24-6-2-1-3-7-24/h1-3,6-8,11,16-17,23,26,31,41,43H,4-5,9-10,12-15,18-22H2,(H,36,42)(H,35,37,38)/t31-,34+/m0/s1" VAQ InChIKey InChI 1.03 SVGIQPUADMIIMK-AFPLUKJUSA-N VAQ SMILES_CANONICAL CACTVS 3.385 "Oc1cc(CN2CC3(CCC3)[C@@H]2C4CC4)ccc1C(=O)NC[C@]5(O)CCCN(C5)c6cc(NCc7ccccc7)ncn6" VAQ SMILES CACTVS 3.385 "Oc1cc(CN2CC3(CCC3)[CH]2C4CC4)ccc1C(=O)NC[C]5(O)CCCN(C5)c6cc(NCc7ccccc7)ncn6" VAQ SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CNc2cc(ncn2)N3CCC[C@](C3)(CNC(=O)c4ccc(cc4O)CN5CC6([C@@H]5C7CC7)CCC6)O" VAQ SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc(cc1)CNc2cc(ncn2)N3CCCC(C3)(CNC(=O)c4ccc(cc4O)CN5CC6(C5C7CC7)CCC6)O" # _pdbx_chem_comp_identifier.comp_id VAQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "4-[[(3~{S})-3-cyclopropyl-2-azaspiro[3.3]heptan-2-yl]methyl]-2-oxidanyl-~{N}-[[(3~{R})-3-oxidanyl-1-[6-[(phenylmethyl)amino]pyrimidin-4-yl]piperidin-3-yl]methyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VAQ "Create component" 2021-05-04 PDBE VAQ "Modify name" 2021-10-02 PDBE VAQ "Initial release" 2021-10-20 RCSB ##