data_VAY # _chem_comp.id VAY _chem_comp.name "{(1R,2R,3S,4R)-4-[(5-{4-[(1S)-1-(6-bromopyridin-2-yl)-1-hydroxyethyl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2,3-dihydroxycyclopentyl}methyl sulfamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H24 Br N5 O7 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-22 _chem_comp.pdbx_modified_date 2021-03-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 614.489 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VAY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XOG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VAY C4 C1 C 0 1 N N N 34.418 -3.082 26.201 -3.735 -0.343 -0.275 C4 VAY 1 VAY C5 C2 C 0 1 N N R 33.551 -3.397 24.917 -5.266 -0.466 -0.077 C5 VAY 2 VAY C6 C3 C 0 1 N N N 32.085 -3.222 25.330 -5.845 0.847 0.454 C6 VAY 3 VAY C8 C4 C 0 1 Y N N 37.703 -3.592 27.517 -1.080 -2.967 -0.174 C8 VAY 4 VAY C10 C5 C 0 1 Y N N 39.560 -2.354 26.793 -0.908 -5.060 -1.116 C10 VAY 5 VAY C13 C6 C 0 1 Y N N 38.369 -3.704 28.763 0.303 -2.995 0.099 C13 VAY 6 VAY C15 C7 C 0 1 Y N N 38.470 -5.155 30.980 1.251 -0.633 0.019 C15 VAY 7 VAY C20 C8 C 0 1 Y N N 39.678 -5.772 31.046 1.934 0.451 0.500 C20 VAY 8 VAY C21 C9 C 0 1 N N S 41.305 -7.167 32.693 2.775 2.754 -0.107 C21 VAY 9 VAY C22 C10 C 0 1 Y N N 40.659 -8.477 32.309 4.245 2.480 0.084 C22 VAY 10 VAY C24 C11 C 0 1 Y N N 40.537 -10.197 30.758 5.960 0.948 0.231 C24 VAY 11 VAY C26 C12 C 0 1 Y N N 39.184 -10.351 32.759 6.467 3.272 0.453 C26 VAY 12 VAY C27 C13 C 0 1 Y N N 39.734 -9.133 33.149 5.116 3.534 0.278 C27 VAY 13 VAY C25 C14 C 0 1 Y N N 39.598 -10.888 31.539 6.892 1.953 0.426 C25 VAY 14 VAY BR28 BR1 BR 0 0 N N N 41.119 -10.887 29.097 6.524 -0.856 0.198 BR28 VAY 15 VAY N23 N1 N 0 1 Y N N 41.056 -9.024 31.158 4.683 1.236 0.068 N23 VAY 16 VAY O30 O1 O 0 1 N N N 41.985 -6.390 31.779 2.598 3.671 -1.189 O30 VAY 17 VAY C29 C15 C 0 1 N N N 41.339 -6.810 34.170 2.199 3.360 1.175 C29 VAY 18 VAY C19 C16 C 0 1 Y N N 39.942 -6.359 32.288 2.060 1.465 -0.419 C19 VAY 19 VAY C18 C17 C 0 1 Y N N 38.910 -6.217 33.170 1.501 1.224 -1.611 C18 VAY 20 VAY S17 S1 S 0 1 Y N N 37.618 -5.342 32.415 0.773 -0.319 -1.644 S17 VAY 21 VAY C14 C18 C 0 1 N N N 37.710 -4.408 29.865 0.969 -1.860 0.767 C14 VAY 22 VAY O16 O2 O 0 1 N N N 36.491 -4.310 29.950 1.283 -1.944 1.941 O16 VAY 23 VAY C12 C19 C 0 1 Y N N 39.621 -3.139 28.999 1.025 -4.130 -0.282 C12 VAY 24 VAY N11 N2 N 0 1 Y N N 40.185 -2.468 27.988 0.389 -5.124 -0.877 N11 VAY 25 VAY N9 N3 N 0 1 Y N N 38.359 -2.902 26.561 -1.634 -4.015 -0.777 N9 VAY 26 VAY N7 N4 N 0 1 N N N 36.485 -4.141 27.324 -1.845 -1.877 0.184 N7 VAY 27 VAY C3 C20 C 0 1 N N R 35.672 -4.009 26.046 -3.257 -1.815 -0.203 C3 VAY 28 VAY C2 C21 C 0 1 N N S 34.960 -5.343 25.679 -4.144 -2.447 0.890 C2 VAY 29 VAY O32 O3 O 0 1 N N N 35.884 -6.183 24.993 -4.474 -3.792 0.534 O32 VAY 30 VAY C1 C22 C 0 1 N N R 33.838 -4.921 24.662 -5.424 -1.589 0.970 C1 VAY 31 VAY O31 O4 O 0 1 N N N 34.243 -4.967 23.297 -6.570 -2.385 0.665 O31 VAY 32 VAY O33 O5 O 0 1 N N N 31.187 -3.527 24.313 -5.714 1.863 -0.542 O33 VAY 33 VAY S34 S2 S 0 1 N N N 29.829 -4.062 24.654 -6.260 3.219 -0.118 S34 VAY 34 VAY O35 O6 O 0 1 N N N 29.075 -4.140 23.391 -6.235 4.041 -1.277 O35 VAY 35 VAY O36 O7 O 0 1 N N N 30.038 -5.362 25.314 -7.443 2.961 0.626 O36 VAY 36 VAY N37 N5 N 0 1 N N N 29.066 -2.983 25.700 -5.173 3.875 0.945 N37 VAY 37 VAY H1 H1 H 0 1 N N N 34.715 -2.023 26.223 -3.505 0.091 -1.248 H1 VAY 38 VAY H2 H2 H 0 1 N N N 33.862 -3.326 27.118 -3.289 0.248 0.525 H2 VAY 39 VAY H3 H3 H 0 1 N N N 33.833 -2.768 24.060 -5.751 -0.744 -1.013 H3 VAY 40 VAY H4 H4 H 0 1 N N N 31.930 -2.175 25.631 -6.899 0.708 0.696 H4 VAY 41 VAY H5 H5 H 0 1 N N N 31.882 -3.883 26.185 -5.304 1.145 1.352 H5 VAY 42 VAY H6 H6 H 0 1 N N N 40.045 -1.803 26.000 -1.390 -5.894 -1.605 H6 VAY 43 VAY H7 H7 H 0 1 N N N 40.370 -5.806 30.217 2.334 0.504 1.502 H7 VAY 44 VAY H8 H8 H 0 1 N N N 38.462 -10.862 33.379 7.171 4.076 0.608 H8 VAY 45 VAY H9 H9 H 0 1 N N N 39.453 -8.691 34.093 4.750 4.550 0.294 H9 VAY 46 VAY H10 H10 H 0 1 N N N 39.197 -11.831 31.198 7.936 1.712 0.559 H10 VAY 47 VAY H11 H11 H 0 1 N N N 42.902 -6.638 31.772 2.941 3.352 -2.035 H11 VAY 48 VAY H12 H12 H 0 1 N N N 40.743 -7.540 34.738 2.717 4.292 1.400 H12 VAY 49 VAY H13 H13 H 0 1 N N N 42.379 -6.828 34.528 1.136 3.558 1.037 H13 VAY 50 VAY H14 H14 H 0 1 N N N 40.920 -5.803 34.313 2.334 2.661 2.000 H14 VAY 51 VAY H15 H15 H 0 1 N N N 38.900 -6.592 34.183 1.510 1.914 -2.442 H15 VAY 52 VAY H16 H16 H 0 1 N N N 40.114 -3.238 29.955 2.086 -4.194 -0.093 H16 VAY 53 VAY H17 H17 H 0 1 N N N 35.906 -3.771 28.050 -1.449 -1.151 0.691 H17 VAY 54 VAY H18 H18 H 0 1 N N N 36.301 -3.666 25.212 -3.413 -2.313 -1.159 H18 VAY 55 VAY H19 H19 H 0 1 N N N 34.523 -5.817 26.570 -3.625 -2.431 1.848 H19 VAY 56 VAY H20 H20 H 0 1 N N N 36.573 -6.451 25.590 -5.031 -4.244 1.182 H20 VAY 57 VAY H21 H21 H 0 1 N N N 32.927 -5.510 24.843 -5.522 -1.158 1.966 H21 VAY 58 VAY H22 H22 H 0 1 N N N 34.439 -5.864 23.054 -6.723 -3.109 1.287 H22 VAY 59 VAY H23 H23 H 0 1 N N N 29.578 -2.930 26.557 -4.368 3.387 1.178 H23 VAY 60 VAY H24 H24 H 0 1 N N N 29.030 -2.078 25.277 -5.341 4.747 1.334 H24 VAY 61 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VAY O31 C1 SING N N 1 VAY O35 S34 DOUB N N 2 VAY O33 S34 SING N N 3 VAY O33 C6 SING N N 4 VAY S34 O36 DOUB N N 5 VAY S34 N37 SING N N 6 VAY C1 C5 SING N N 7 VAY C1 C2 SING N N 8 VAY C5 C6 SING N N 9 VAY C5 C4 SING N N 10 VAY O32 C2 SING N N 11 VAY C2 C3 SING N N 12 VAY C3 C4 SING N N 13 VAY C3 N7 SING N N 14 VAY N9 C10 DOUB Y N 15 VAY N9 C8 SING Y N 16 VAY C10 N11 SING Y N 17 VAY N7 C8 SING N N 18 VAY C8 C13 DOUB Y N 19 VAY N11 C12 DOUB Y N 20 VAY C13 C12 SING Y N 21 VAY C13 C14 SING N N 22 VAY BR28 C24 SING N N 23 VAY C14 O16 DOUB N N 24 VAY C14 C15 SING N N 25 VAY C24 N23 DOUB Y N 26 VAY C24 C25 SING Y N 27 VAY C15 C20 DOUB Y N 28 VAY C15 S17 SING Y N 29 VAY C20 C19 SING Y N 30 VAY N23 C22 SING Y N 31 VAY C25 C26 DOUB Y N 32 VAY O30 C21 SING N N 33 VAY C19 C21 SING N N 34 VAY C19 C18 DOUB Y N 35 VAY C22 C21 SING N N 36 VAY C22 C27 DOUB Y N 37 VAY S17 C18 SING Y N 38 VAY C21 C29 SING N N 39 VAY C26 C27 SING Y N 40 VAY C4 H1 SING N N 41 VAY C4 H2 SING N N 42 VAY C5 H3 SING N N 43 VAY C6 H4 SING N N 44 VAY C6 H5 SING N N 45 VAY C10 H6 SING N N 46 VAY C20 H7 SING N N 47 VAY C26 H8 SING N N 48 VAY C27 H9 SING N N 49 VAY C25 H10 SING N N 50 VAY O30 H11 SING N N 51 VAY C29 H12 SING N N 52 VAY C29 H13 SING N N 53 VAY C29 H14 SING N N 54 VAY C18 H15 SING N N 55 VAY C12 H16 SING N N 56 VAY N7 H17 SING N N 57 VAY C3 H18 SING N N 58 VAY C2 H19 SING N N 59 VAY O32 H20 SING N N 60 VAY C1 H21 SING N N 61 VAY O31 H22 SING N N 62 VAY N37 H23 SING N N 63 VAY N37 H24 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VAY SMILES ACDLabs 12.01 "C1C(COS(=O)(N)=O)C(C(C1Nc2c(cncn2)C(c4cc(C(C)(c3cccc(n3)Br)O)cs4)=O)O)O" VAY InChI InChI 1.03 "InChI=1S/C22H24BrN5O7S2/c1-22(32,16-3-2-4-17(23)28-16)12-6-15(36-9-12)19(30)13-7-25-10-26-21(13)27-14-5-11(18(29)20(14)31)8-35-37(24,33)34/h2-4,6-7,9-11,14,18,20,29,31-32H,5,8H2,1H3,(H2,24,33,34)(H,25,26,27)/t11-,14-,18-,20+,22+/m1/s1" VAY InChIKey InChI 1.03 IZYVMHSGDZFGFW-SULQKKJVSA-N VAY SMILES_CANONICAL CACTVS 3.385 "C[C@](O)(c1csc(c1)C(=O)c2cncnc2N[C@@H]3C[C@H](CO[S](N)(=O)=O)[C@@H](O)[C@H]3O)c4cccc(Br)n4" VAY SMILES CACTVS 3.385 "C[C](O)(c1csc(c1)C(=O)c2cncnc2N[CH]3C[CH](CO[S](N)(=O)=O)[CH](O)[CH]3O)c4cccc(Br)n4" VAY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@](c1cccc(n1)Br)(c2cc(sc2)C(=O)c3cncnc3N[C@@H]4C[C@@H]([C@H]([C@H]4O)O)COS(=O)(=O)N)O" VAY SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cccc(n1)Br)(c2cc(sc2)C(=O)c3cncnc3NC4CC(C(C4O)O)COS(=O)(=O)N)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VAY "SYSTEMATIC NAME" ACDLabs 12.01 "{(1R,2R,3S,4R)-4-[(5-{4-[(1S)-1-(6-bromopyridin-2-yl)-1-hydroxyethyl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2,3-dihydroxycyclopentyl}methyl sulfamate" VAY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(1~{R},2~{R},3~{S},4~{R})-4-[[5-[4-[(1~{S})-1-(6-bromanylpyridin-2-yl)-1-oxidanyl-ethyl]thiophen-2-yl]carbonylpyrimidin-4-yl]amino]-2,3-bis(oxidanyl)cyclopentyl]methyl sulfamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VAY "Create component" 2020-07-22 RCSB VAY "Initial release" 2021-03-10 RCSB ##