data_VAZ # _chem_comp.id VAZ _chem_comp.name "N^6^-{(1R)-2-{[(1S,2R)-1-carboxy-2-hydroxy-2-(methylsulfanyl)ethyl]oxy}-1-[(oxidosulfanyl)methyl]-2-oxoethyl}-6-oxo-L-lysine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H22 N2 O9 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(S)-2-amino-6-((R)-1-((1S,2S)-1-carboxy-2-hydroxy-2-(methylthio)ethoxy)-3-hydrosulfinyl-1-oxopropan-2-ylamino)-6-oxohexanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-09-07 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.452 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VAZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2VBB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VAZ SAQ SAQ S 0 1 N N N 5.984 39.331 2.218 6.784 -0.729 0.648 SAQ VAZ 1 VAZ CAY CAY C 0 1 N N R 7.019 37.861 2.894 5.347 0.221 0.082 CAY VAZ 2 VAZ OAJ OAJ O 0 1 N N N 7.169 36.602 2.221 5.147 1.342 0.945 OAJ VAZ 3 VAZ CAZ CAZ C 0 1 N N S 6.834 37.359 4.297 4.104 -0.670 0.107 CAZ VAZ 4 VAZ CAU CAU C 0 1 N N N 5.465 37.269 5.084 4.315 -1.852 -0.804 CAU VAZ 5 VAZ OAI OAI O 0 1 N N N 5.438 38.005 6.136 3.629 -1.985 -1.790 OAI VAZ 6 VAZ OAE OAE O 0 1 N N N 4.473 36.540 4.679 5.264 -2.757 -0.519 OAE VAZ 7 VAZ OAP OAP O 0 1 N N N 7.606 38.461 4.808 2.953 0.091 -0.347 OAP VAZ 8 VAZ CAV CAV C 0 1 N N N 8.910 38.259 4.759 1.758 -0.253 0.158 CAV VAZ 9 VAZ OAF OAF O 0 1 N N N 9.434 37.241 4.683 1.676 -1.159 0.953 OAF VAZ 10 VAZ CAX CAX C 0 1 N N R 9.711 39.536 4.832 0.518 0.492 -0.266 CAX VAZ 11 VAZ CAN CAN C 0 1 N N N 9.411 40.540 3.721 0.662 1.971 0.099 CAN VAZ 12 VAZ SAR SAR S 0 1 N N R 9.472 39.709 2.117 -0.830 2.868 -0.412 SAR VAZ 13 VAZ OAG OAG O 0 1 N N N 8.253 39.178 2.294 -0.696 4.241 -0.073 OAG VAZ 14 VAZ NAO NAO N 0 1 N N N 11.124 39.270 4.657 -0.648 -0.069 0.421 NAO VAZ 15 VAZ CAS CAS C 0 1 N N N 12.033 39.459 5.601 -1.874 0.052 -0.124 CAS VAZ 16 VAZ OAC OAC O 0 1 N N N 11.693 39.737 6.779 -2.012 0.625 -1.184 OAC VAZ 17 VAZ CAL CAL C 0 1 N N N 13.396 39.059 5.236 -3.073 -0.525 0.582 CAL VAZ 18 VAZ CAK CAK C 0 1 N N N 13.779 37.713 5.889 -4.332 -0.252 -0.244 CAK VAZ 19 VAZ CB CB C 0 1 N N N 15.242 37.404 5.410 -5.550 -0.838 0.474 CB VAZ 20 VAZ CA CA C 0 1 N N S 15.903 36.339 6.149 -6.809 -0.566 -0.352 CA VAZ 21 VAZ C C C 0 1 N N N 17.320 36.193 5.616 -7.989 -1.247 0.291 C VAZ 22 VAZ OXT OXT O 0 1 N N N 18.237 36.395 6.407 -8.754 -0.611 0.977 OXT VAZ 23 VAZ O O O 0 1 N N N 17.487 35.836 4.448 -8.190 -2.561 0.102 O VAZ 24 VAZ N N N 0 1 N N N 15.893 36.464 7.583 -7.051 0.882 -0.411 N VAZ 25 VAZ CAA CAA C 0 1 N N N 4.658 38.404 1.280 8.160 0.428 0.405 CAA VAZ 26 VAZ HAA1 1HAA H 0 0 N N N 3.799 38.222 1.942 9.091 -0.044 0.718 HAA1 VAZ 27 VAZ HAA2 2HAA H 0 0 N N N 4.334 39.002 0.416 8.226 0.698 -0.648 HAA2 VAZ 28 VAZ HAA3 3HAA H 0 0 N N N 5.061 37.442 0.930 7.990 1.325 1.001 HAA3 VAZ 29 VAZ HAJ HAJ H 0 1 N N N 7.202 36.746 1.283 4.985 1.104 1.868 HAJ VAZ 30 VAZ HAZ HAZ H 0 1 N N N 7.046 36.283 4.381 3.929 -1.021 1.124 HAZ VAZ 31 VAZ HAE HAE H 0 1 N N N 3.741 36.640 5.277 5.362 -3.498 -1.133 HAE VAZ 32 VAZ HAX HAX H 0 1 N N N 9.438 39.945 5.816 0.387 0.394 -1.343 HAX VAZ 33 VAZ HAN1 1HAN H 0 0 N N N 8.408 40.966 3.874 0.794 2.069 1.176 HAN1 VAZ 34 VAZ HAN2 2HAN H 0 0 N N N 10.161 41.344 3.744 1.530 2.388 -0.413 HAN2 VAZ 35 VAZ HAO HAO H 0 1 N N N 11.431 38.923 3.771 -0.537 -0.527 1.269 HAO VAZ 36 VAZ HAL1 1HAL H 0 0 N N N 13.455 38.954 4.143 -2.943 -1.601 0.701 HAL1 VAZ 37 VAZ HAL2 2HAL H 0 0 N N N 14.093 39.831 5.594 -3.175 -0.061 1.563 HAL2 VAZ 38 VAZ HAK1 1HAK H 0 0 N N N 13.737 37.787 6.986 -4.463 0.823 -0.362 HAK1 VAZ 39 VAZ HAK2 2HAK H 0 0 N N N 13.083 36.912 5.599 -4.231 -0.716 -1.225 HAK2 VAZ 40 VAZ HBC1 1HBC H 0 0 N N N 15.195 37.103 4.353 -5.419 -1.914 0.592 HBC1 VAZ 41 VAZ HBC2 2HBC H 0 0 N N N 15.830 38.318 5.577 -5.652 -0.374 1.455 HBC2 VAZ 42 VAZ HA HA H 0 1 N N N 15.310 35.429 5.975 -6.672 -0.952 -1.362 HA VAZ 43 VAZ HN1 1HN H 0 1 N N N 15.891 35.554 7.997 -7.840 1.093 -1.004 HN1 VAZ 44 VAZ HN2 2HN H 0 1 N N N 16.707 36.963 7.880 -7.182 1.265 0.514 HN2 VAZ 45 VAZ H H H 0 1 N N N 18.417 35.748 4.273 -8.961 -2.953 0.535 H VAZ 46 VAZ HAY HAY H 0 1 N N N 7.867 38.540 2.721 5.521 0.573 -0.935 HAY VAZ 47 VAZ HAR HAR H 0 1 N N N 9.606 40.485 1.083 -0.734 2.876 -1.753 HAR VAZ 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VAZ SAQ CAY SING N N 1 VAZ SAQ CAA SING N N 2 VAZ CAY OAJ SING N N 3 VAZ CAY CAZ SING N N 4 VAZ CAZ CAU SING N N 5 VAZ CAZ OAP SING N N 6 VAZ CAU OAI DOUB N N 7 VAZ CAU OAE SING N N 8 VAZ OAP CAV SING N N 9 VAZ CAV OAF DOUB N N 10 VAZ CAV CAX SING N N 11 VAZ CAX CAN SING N N 12 VAZ CAX NAO SING N N 13 VAZ CAN SAR SING N N 14 VAZ SAR OAG DOUB N N 15 VAZ NAO CAS SING N N 16 VAZ CAS OAC DOUB N N 17 VAZ CAS CAL SING N N 18 VAZ CAL CAK SING N N 19 VAZ CAK CB SING N N 20 VAZ CB CA SING N N 21 VAZ CA C SING N N 22 VAZ CA N SING N N 23 VAZ C OXT DOUB N N 24 VAZ C O SING N N 25 VAZ CAA HAA1 SING N N 26 VAZ CAA HAA2 SING N N 27 VAZ CAA HAA3 SING N N 28 VAZ OAJ HAJ SING N N 29 VAZ CAZ HAZ SING N N 30 VAZ OAE HAE SING N N 31 VAZ CAX HAX SING N N 32 VAZ CAN HAN1 SING N N 33 VAZ CAN HAN2 SING N N 34 VAZ NAO HAO SING N N 35 VAZ CAL HAL1 SING N N 36 VAZ CAL HAL2 SING N N 37 VAZ CAK HAK1 SING N N 38 VAZ CAK HAK2 SING N N 39 VAZ CB HBC1 SING N N 40 VAZ CB HBC2 SING N N 41 VAZ CA HA SING N N 42 VAZ N HN1 SING N N 43 VAZ N HN2 SING N N 44 VAZ O H SING N N 45 VAZ CAY HAY SING N N 46 VAZ SAR HAR SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VAZ SMILES ACDLabs 10.04 "O=C(OC(C(=O)O)C(O)SC)C(NC(=O)CCCC(C(=O)O)N)CS=O" VAZ SMILES_CANONICAL CACTVS 3.341 "CS[C@H](O)[C@@H](OC(=O)[C@H](C[S@@H]=O)NC(=O)CCC[C@H](N)C(O)=O)C(O)=O" VAZ SMILES CACTVS 3.341 "CS[CH](O)[CH](OC(=O)[CH](C[SH]=O)NC(=O)CCC[CH](N)C(O)=O)C(O)=O" VAZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CS[C@@H]([C@H](C(=O)O)OC(=O)[C@H](C[S@H]=O)NC(=O)CCC[C@@H](C(=O)O)N)O" VAZ SMILES "OpenEye OEToolkits" 1.5.0 "CSC(C(C(=O)O)OC(=O)C(CS=O)NC(=O)CCCC(C(=O)O)N)O" VAZ InChI InChI 1.03 "InChI=1S/C13H22N2O9S2/c1-25-13(22)9(11(19)20)24-12(21)7(5-26-23)15-8(16)4-2-3-6(14)10(17)18/h6-7,9,13,22,26H,2-5,14H2,1H3,(H,15,16)(H,17,18)(H,19,20)/t6-,7-,9-,13-/m0/s1" VAZ InChIKey InChI 1.03 CRQOTISMRKWURZ-LOSGYTSQSA-N # _pdbx_chem_comp_identifier.comp_id VAZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 10.04 _pdbx_chem_comp_identifier.identifier "N~6~-{(1R)-2-{[(1S,2S)-1-carboxy-2-hydroxy-2-(methylsulfanyl)ethyl]oxy}-1-[(oxidosulfanyl)methyl]-2-oxoethyl}-6-oxo-L-lysine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VAZ "Create component" 2007-09-07 PDBJ VAZ "Modify descriptor" 2011-06-04 RCSB VAZ "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VAZ _pdbx_chem_comp_synonyms.name "(S)-2-amino-6-((R)-1-((1S,2S)-1-carboxy-2-hydroxy-2-(methylthio)ethoxy)-3-hydrosulfinyl-1-oxopropan-2-ylamino)-6-oxohexanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##