data_VB9 # _chem_comp.id VB9 _chem_comp.name "3-[2-(dimethylamino)ethyl]-2-sulfanylidene-2,3-dihydrothieno[3,2-d]pyrimidin-4(1H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H13 N3 O S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-29 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 255.360 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VB9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FLE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VB9 N1 N1 N 0 1 N N N 46.148 31.567 27.476 -0.329 0.088 0.440 N1 VB9 1 VB9 C7 C1 C 0 1 Y N N 49.946 33.080 27.313 3.588 0.991 -0.555 C7 VB9 2 VB9 C8 C2 C 0 1 Y N N 50.028 33.826 26.248 4.348 -0.099 -0.476 C8 VB9 3 VB9 N2 N2 N 0 1 N N N 48.331 31.702 28.447 1.195 1.738 -0.233 N2 VB9 4 VB9 C9 C3 C 0 1 N N N 47.128 31.254 28.425 -0.047 1.358 0.104 C9 VB9 5 VB9 C1 C4 C 0 1 N N N 43.378 27.784 26.394 -4.524 -1.716 -1.225 C1 VB9 6 VB9 C5 C5 C 0 1 Y N N 47.772 32.913 26.482 1.964 -0.497 0.108 C5 VB9 7 VB9 C6 C6 C 0 1 Y N N 48.635 32.530 27.463 2.246 0.811 -0.243 C6 VB9 8 VB9 C4 C7 C 0 1 N N N 46.401 32.470 26.413 0.635 -0.851 0.456 C4 VB9 9 VB9 C3 C8 C 0 1 N N N 44.862 30.956 27.547 -1.702 -0.278 0.800 C3 VB9 10 VB9 C2 C9 C 0 1 N N N 44.762 29.795 26.545 -2.461 -0.709 -0.457 C2 VB9 11 VB9 S1 S1 S 0 1 N N N 46.711 30.275 29.670 -1.304 2.520 0.104 S1 VB9 12 VB9 N N3 N 0 1 N N N 43.340 29.282 26.540 -3.837 -1.076 -0.096 N VB9 13 VB9 C C10 C 0 1 N N N 42.528 29.849 25.394 -4.586 0.095 0.381 C VB9 14 VB9 S S2 S 0 1 Y N N 48.593 33.865 25.460 3.437 -1.453 0.016 S VB9 15 VB9 O O1 O 0 1 N N N 45.449 32.803 25.636 0.369 -1.998 0.767 O VB9 16 VB9 H1 H1 H 0 1 N N N 50.764 32.900 27.995 3.987 1.950 -0.850 H1 VB9 17 VB9 H2 H2 H 0 1 N N N 50.919 34.347 25.929 5.407 -0.121 -0.687 H2 VB9 18 VB9 H3 H3 H 0 1 N N N 48.988 31.444 29.155 1.367 2.663 -0.471 H3 VB9 19 VB9 H4 H4 H 0 1 N N N 43.964 27.350 27.217 -3.986 -2.619 -1.513 H4 VB9 20 VB9 H5 H5 H 0 1 N N N 42.353 27.387 26.424 -5.541 -1.978 -0.931 H5 VB9 21 VB9 H6 H6 H 0 1 N N N 43.845 27.521 25.433 -4.556 -1.028 -2.069 H6 VB9 22 VB9 H7 H7 H 0 1 N N N 44.092 31.705 27.311 -1.683 -1.102 1.513 H7 VB9 23 VB9 H8 H8 H 0 1 N N N 44.700 30.571 28.565 -2.201 0.581 1.249 H8 VB9 24 VB9 H9 H9 H 0 1 N N N 45.446 28.987 26.844 -2.480 0.115 -1.170 H9 VB9 25 VB9 H10 H10 H 0 1 N N N 45.031 30.150 25.539 -1.962 -1.567 -0.906 H10 VB9 26 VB9 H12 H12 H 0 1 N N N 42.487 30.945 25.480 -5.578 -0.217 0.707 H12 VB9 27 VB9 H13 H13 H 0 1 N N N 43.000 29.574 24.439 -4.055 0.550 1.217 H13 VB9 28 VB9 H14 H14 H 0 1 N N N 41.508 29.440 25.430 -4.680 0.820 -0.428 H14 VB9 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VB9 C N SING N N 1 VB9 S C8 SING Y N 2 VB9 S C5 SING Y N 3 VB9 O C4 DOUB N N 4 VB9 C8 C7 DOUB Y N 5 VB9 C1 N SING N N 6 VB9 C4 C5 SING N N 7 VB9 C4 N1 SING N N 8 VB9 C5 C6 DOUB Y N 9 VB9 N C2 SING N N 10 VB9 C2 C3 SING N N 11 VB9 C7 C6 SING Y N 12 VB9 C6 N2 SING N N 13 VB9 N1 C3 SING N N 14 VB9 N1 C9 SING N N 15 VB9 C9 N2 SING N N 16 VB9 C9 S1 DOUB N N 17 VB9 C7 H1 SING N N 18 VB9 C8 H2 SING N N 19 VB9 N2 H3 SING N N 20 VB9 C1 H4 SING N N 21 VB9 C1 H5 SING N N 22 VB9 C1 H6 SING N N 23 VB9 C3 H7 SING N N 24 VB9 C3 H8 SING N N 25 VB9 C2 H9 SING N N 26 VB9 C2 H10 SING N N 27 VB9 C H12 SING N N 28 VB9 C H13 SING N N 29 VB9 C H14 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VB9 SMILES ACDLabs 12.01 "CN(C)CCN1C(=O)c2sccc2NC1=S" VB9 InChI InChI 1.06 "InChI=1S/C10H13N3OS2/c1-12(2)4-5-13-9(14)8-7(3-6-16-8)11-10(13)15/h3,6H,4-5H2,1-2H3,(H,11,15)" VB9 InChIKey InChI 1.06 PIFSYBNBNGDCBU-UHFFFAOYSA-N VB9 SMILES_CANONICAL CACTVS 3.385 "CN(C)CCN1C(=S)Nc2ccsc2C1=O" VB9 SMILES CACTVS 3.385 "CN(C)CCN1C(=S)Nc2ccsc2C1=O" VB9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCN1C(=O)c2c(ccs2)NC1=S" VB9 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CCN1C(=O)c2c(ccs2)NC1=S" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VB9 "SYSTEMATIC NAME" ACDLabs 12.01 "3-[2-(dimethylamino)ethyl]-2-sulfanylidene-2,3-dihydrothieno[3,2-d]pyrimidin-4(1H)-one" VB9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-(dimethylamino)ethyl]-2-sulfanylidene-1~{H}-thieno[3,2-d]pyrimidin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VB9 "Create component" 2022-08-29 RCSB VB9 "Initial release" 2022-11-02 RCSB #