data_VBB # _chem_comp.id VBB _chem_comp.name "2-(dimethylamino)ethyl 5-(2-azanyl-6-chloranyl-pyrimidin-4-yl)-2-methyl-4-(phenylmethyl)pyrazole-3-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H23 Cl N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-01 _chem_comp.pdbx_modified_date 2023-04-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.889 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VBB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8COT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VBB C02 C1 C 0 1 Y N N -26.139 3.954 0.694 -4.386 -0.227 -1.181 C02 VBB 1 VBB C04 C2 C 0 1 Y N N -28.656 4.246 0.867 -2.477 0.784 -0.373 C04 VBB 2 VBB C05 C3 C 0 1 Y N N -28.449 5.629 1.391 -3.262 1.533 0.505 C05 VBB 3 VBB C06 C4 C 0 1 Y N N -27.059 6.132 1.553 -4.635 1.346 0.486 C06 VBB 4 VBB C09 C5 C 0 1 Y N N -30.085 3.747 0.693 -1.003 0.947 -0.390 C09 VBB 5 VBB C10 C6 C 0 1 Y N N -30.521 2.572 0.138 -0.065 -0.011 -0.818 C10 VBB 6 VBB C11 C7 C 0 1 Y N N -31.893 2.572 0.192 1.170 0.588 -0.652 C11 VBB 7 VBB C12 C8 C 0 1 Y N N -27.582 -0.369 2.543 0.778 -3.908 1.238 C12 VBB 8 VBB C13 C9 C 0 1 Y N N -27.940 0.603 1.424 0.797 -3.009 0.188 C13 VBB 9 VBB C14 C10 C 0 1 Y N N -29.267 0.478 0.690 -0.368 -2.373 -0.199 C14 VBB 10 VBB C15 C11 C 0 1 Y N N -30.236 -0.631 1.078 -1.552 -2.635 0.464 C15 VBB 11 VBB C16 C12 C 0 1 Y N N -29.879 -1.613 2.195 -1.571 -3.534 1.515 C16 VBB 12 VBB C17 C13 C 0 1 Y N N -28.552 -1.478 2.930 -0.406 -4.170 1.902 C17 VBB 13 VBB C18 C14 C 0 1 N N N -32.845 1.476 -0.306 2.482 -0.002 -0.956 C18 VBB 14 VBB C21 C15 C 0 1 N N N -32.352 -0.032 -2.096 4.862 0.096 -1.124 C21 VBB 15 VBB C22 C16 C 0 1 N N N -33.750 -0.270 -2.669 6.028 0.967 -0.651 C22 VBB 16 VBB C24 C17 C 0 1 N N N -33.144 -0.752 -4.931 6.674 -0.299 1.309 C24 VBB 17 VBB C25 C18 C 0 1 N N N -35.174 0.376 -4.475 6.823 2.117 1.325 C25 VBB 18 VBB C26 C19 C 0 1 N N N -29.629 1.461 -0.429 -0.347 -1.394 -1.345 C26 VBB 19 VBB C27 C20 C 0 1 N N N -33.628 4.173 1.032 1.962 2.823 0.180 C27 VBB 20 VBB N01 N1 N 0 1 Y N N -25.936 5.308 1.208 -5.157 0.470 -0.359 N01 VBB 21 VBB N03 N2 N 0 1 Y N N -27.507 3.434 0.525 -3.071 -0.079 -1.195 N03 VBB 22 VBB N07 N3 N 0 1 Y N N -32.272 3.723 0.762 0.930 1.837 -0.149 N07 VBB 23 VBB N08 N4 N 0 1 Y N N -31.140 4.451 1.068 -0.334 2.018 -0.014 N08 VBB 24 VBB N23 N5 N 0 1 N N N -33.796 0.200 -4.048 6.085 0.953 0.817 N23 VBB 25 VBB N28 N6 N 0 1 N N N -24.968 3.171 0.381 -4.970 -1.137 -2.045 N28 VBB 26 VBB O19 O1 O 0 1 N N N -32.389 0.212 -0.714 3.609 0.688 -0.692 O19 VBB 27 VBB O20 O2 O 0 1 N N N -34.005 1.701 -0.350 2.550 -1.113 -1.446 O20 VBB 28 VBB CL29 CL1 CL 0 0 N N N -26.707 7.753 2.165 -5.659 2.251 1.556 CL29 VBB 29 VBB H051 H1 H 0 0 N N N -29.293 6.252 1.647 -2.811 2.241 1.184 H051 VBB 30 VBB H121 H2 H 0 0 N N N -26.640 -0.271 3.062 1.687 -4.408 1.537 H121 VBB 31 VBB H131 H3 H 0 0 N N N -27.247 1.385 1.151 1.722 -2.804 -0.331 H131 VBB 32 VBB H151 H4 H 0 0 N N N -31.180 -0.725 0.562 -2.462 -2.139 0.162 H151 VBB 33 VBB H161 H5 H 0 0 N N N -30.567 -2.401 2.462 -2.496 -3.739 2.034 H161 VBB 34 VBB H171 H6 H 0 0 N N N -28.299 -2.166 3.723 -0.422 -4.875 2.719 H171 VBB 35 VBB H211 H7 H 0 0 N N N -31.734 -0.922 -2.284 4.876 0.030 -2.212 H211 VBB 36 VBB H212 H8 H 0 0 N N N -31.904 0.838 -2.599 4.958 -0.903 -0.698 H212 VBB 37 VBB H221 H9 H 0 0 N N N -34.491 0.280 -2.069 6.961 0.574 -1.055 H221 VBB 38 VBB H222 H10 H 0 0 N N N -33.980 -1.345 -2.640 5.883 1.989 -1.000 H222 VBB 39 VBB H243 H11 H 0 0 N N N -32.100 -0.891 -4.614 6.705 -0.283 2.398 H243 VBB 40 VBB H242 H12 H 0 0 N N N -33.672 -1.716 -4.885 6.068 -1.142 0.975 H242 VBB 41 VBB H241 H13 H 0 0 N N N -33.167 -0.370 -5.962 7.687 -0.403 0.919 H241 VBB 42 VBB H252 H14 H 0 0 N N N -35.675 1.096 -3.811 7.836 2.109 0.924 H252 VBB 43 VBB H251 H15 H 0 0 N N N -35.192 0.755 -5.507 6.317 3.032 1.015 H251 VBB 44 VBB H253 H16 H 0 0 N N N -35.698 -0.590 -4.430 6.863 2.075 2.414 H253 VBB 45 VBB H261 H17 H 0 0 N N N -30.169 0.928 -1.226 -1.315 -1.402 -1.847 H261 VBB 46 VBB H262 H18 H 0 0 N N N -28.710 1.903 -0.841 0.431 -1.679 -2.052 H262 VBB 47 VBB H273 H19 H 0 0 N N N -33.598 5.164 1.508 2.242 3.370 -0.721 H273 VBB 48 VBB H272 H20 H 0 0 N N N -34.188 4.237 0.087 1.574 3.521 0.922 H272 VBB 49 VBB H271 H21 H 0 0 N N N -34.124 3.458 1.705 2.837 2.314 0.583 H271 VBB 50 VBB H282 H23 H 0 0 N N N -25.248 2.270 0.050 -5.933 -1.259 -2.043 H282 VBB 51 VBB H281 H24 H 0 0 N N N -24.436 3.635 -0.327 -4.418 -1.654 -2.652 H281 VBB 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VBB C24 N23 SING N N 1 VBB C25 N23 SING N N 2 VBB N23 C22 SING N N 3 VBB C22 C21 SING N N 4 VBB C21 O19 SING N N 5 VBB O19 C18 SING N N 6 VBB C26 C10 SING N N 7 VBB C26 C14 SING N N 8 VBB O20 C18 DOUB N N 9 VBB C18 C11 SING N N 10 VBB C10 C11 DOUB Y N 11 VBB C10 C09 SING Y N 12 VBB C11 N07 SING Y N 13 VBB N28 C02 SING N N 14 VBB N03 C02 DOUB Y N 15 VBB N03 C04 SING Y N 16 VBB C14 C15 DOUB Y N 17 VBB C14 C13 SING Y N 18 VBB C09 C04 SING N N 19 VBB C09 N08 DOUB Y N 20 VBB C02 N01 SING Y N 21 VBB N07 C27 SING N N 22 VBB N07 N08 SING Y N 23 VBB C04 C05 DOUB Y N 24 VBB C15 C16 SING Y N 25 VBB N01 C06 DOUB Y N 26 VBB C05 C06 SING Y N 27 VBB C13 C12 DOUB Y N 28 VBB C06 CL29 SING N N 29 VBB C16 C17 DOUB Y N 30 VBB C12 C17 SING Y N 31 VBB C05 H051 SING N N 32 VBB C12 H121 SING N N 33 VBB C13 H131 SING N N 34 VBB C15 H151 SING N N 35 VBB C16 H161 SING N N 36 VBB C17 H171 SING N N 37 VBB C21 H211 SING N N 38 VBB C21 H212 SING N N 39 VBB C22 H221 SING N N 40 VBB C22 H222 SING N N 41 VBB C24 H243 SING N N 42 VBB C24 H242 SING N N 43 VBB C24 H241 SING N N 44 VBB C25 H252 SING N N 45 VBB C25 H251 SING N N 46 VBB C25 H253 SING N N 47 VBB C26 H261 SING N N 48 VBB C26 H262 SING N N 49 VBB C27 H273 SING N N 50 VBB C27 H272 SING N N 51 VBB C27 H271 SING N N 52 VBB N28 H282 SING N N 53 VBB N28 H281 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VBB InChI InChI 1.06 "InChI=1S/C20H23ClN6O2/c1-26(2)9-10-29-19(28)18-14(11-13-7-5-4-6-8-13)17(25-27(18)3)15-12-16(21)24-20(22)23-15/h4-8,12H,9-11H2,1-3H3,(H2,22,23,24)" VBB InChIKey InChI 1.06 DNOCFTKJMRTNST-UHFFFAOYSA-N VBB SMILES_CANONICAL CACTVS 3.385 "CN(C)CCOC(=O)c1n(C)nc(c1Cc2ccccc2)c3cc(Cl)nc(N)n3" VBB SMILES CACTVS 3.385 "CN(C)CCOC(=O)c1n(C)nc(c1Cc2ccccc2)c3cc(Cl)nc(N)n3" VBB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1c(c(c(n1)c2cc(nc(n2)N)Cl)Cc3ccccc3)C(=O)OCCN(C)C" VBB SMILES "OpenEye OEToolkits" 2.0.7 "Cn1c(c(c(n1)c2cc(nc(n2)N)Cl)Cc3ccccc3)C(=O)OCCN(C)C" # _pdbx_chem_comp_identifier.comp_id VBB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-(dimethylamino)ethyl 5-(2-azanyl-6-chloranyl-pyrimidin-4-yl)-2-methyl-4-(phenylmethyl)pyrazole-3-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VBB "Create component" 2023-03-01 PDBE VBB "Initial release" 2023-04-26 RCSB #