data_VBE # _chem_comp.id VBE _chem_comp.name "1,5-dimethyl-N-[2-(methylamino)-2-oxidanylidene-ethyl]-6-oxidanylidene-N-[(2S)-2-phenylpropyl]pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H25 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1,5-dimethyl-N-(2-(methylamino)-2-oxoethyl)-6-oxo-N-(2-phenylpropyl)-1,6-dihydropyridine-3-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-04 _chem_comp.pdbx_modified_date 2021-07-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 355.431 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VBE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OES _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VBE C10 C1 C 0 1 Y N N 41.443 18.701 10.358 4.128 -0.479 0.262 C10 VBE 1 VBE C13 C2 C 0 1 Y N N 44.155 18.443 9.763 6.824 -0.098 -0.216 C13 VBE 2 VBE C15 C3 C 0 1 Y N N 42.030 17.447 10.248 4.960 -0.071 1.286 C15 VBE 3 VBE C20 C4 C 0 1 N N N 39.992 15.681 6.157 -3.652 -1.780 0.776 C20 VBE 4 VBE C21 C5 C 0 1 N N N 39.097 14.529 5.778 -4.230 -2.744 1.780 C21 VBE 5 VBE C22 C6 C 0 1 N N N 41.429 15.446 6.194 -4.494 -0.898 0.073 C22 VBE 6 VBE C26 C7 C 0 1 N N N 41.706 17.758 6.843 -2.660 0.014 -1.064 C26 VBE 7 VBE C01 C8 C 0 1 N N N 35.514 22.599 7.305 -1.519 4.549 0.499 C01 VBE 8 VBE N02 N1 N 0 1 N N N 36.797 22.281 7.904 -1.128 3.276 1.110 N02 VBE 9 VBE C03 C9 C 0 1 N N N 37.298 21.052 7.907 -0.564 2.312 0.355 C03 VBE 10 VBE O04 O1 O 0 1 N N N 36.715 20.096 7.404 -0.382 2.498 -0.829 O04 VBE 11 VBE C05 C10 C 0 1 N N N 38.646 20.869 8.572 -0.162 1.003 0.983 C05 VBE 12 VBE N06 N2 N 0 1 N N N 39.235 19.567 8.337 0.422 0.130 -0.038 N06 VBE 13 VBE C07 C11 C 0 1 N N N 39.131 18.577 9.412 1.844 0.246 -0.375 C07 VBE 14 VBE C08 C12 C 0 1 N N S 39.963 18.853 10.677 2.658 -0.688 0.522 C08 VBE 15 VBE C09 C13 C 0 1 N N N 39.527 17.955 11.834 2.287 -2.140 0.217 C09 VBE 16 VBE C11 C14 C 0 1 Y N N 42.234 19.822 10.153 4.642 -0.692 -1.004 C11 VBE 17 VBE C12 C15 C 0 1 Y N N 43.581 19.694 9.859 5.990 -0.501 -1.243 C12 VBE 18 VBE C14 C16 C 0 1 Y N N 43.380 17.320 9.960 6.308 0.121 1.047 C14 VBE 19 VBE C16 C17 C 0 1 N N N 39.755 19.332 7.119 -0.348 -0.779 -0.669 C16 VBE 20 VBE O17 O2 O 0 1 N N N 39.782 20.180 6.237 0.152 -1.555 -1.460 O17 VBE 21 VBE C18 C18 C 0 1 N N N 40.370 17.989 6.829 -1.796 -0.832 -0.398 C18 VBE 22 VBE C19 C19 C 0 1 N N N 39.510 16.907 6.458 -2.312 -1.752 0.547 C19 VBE 23 VBE O23 O3 O 0 1 N N N 41.956 14.368 5.942 -5.696 -0.919 0.276 O23 VBE 24 VBE N24 N3 N 0 1 N N N 42.233 16.538 6.541 -3.983 -0.032 -0.820 N24 VBE 25 VBE C25 C20 C 0 1 N N N 43.682 16.329 6.584 -4.880 0.876 -1.539 C25 VBE 26 VBE H1 H1 H 0 1 N N N 45.206 18.344 9.535 7.877 0.051 -0.403 H1 VBE 27 VBE H2 H2 H 0 1 N N N 41.428 16.561 10.388 4.557 0.100 2.274 H2 VBE 28 VBE H3 H3 H 0 1 N N N 38.048 14.858 5.794 -5.311 -2.614 1.828 H3 VBE 29 VBE H4 H4 H 0 1 N N N 39.356 14.181 4.767 -4.000 -3.765 1.478 H4 VBE 30 VBE H5 H5 H 0 1 N N N 39.234 13.707 6.496 -3.797 -2.549 2.762 H5 VBE 31 VBE H6 H6 H 0 1 N N N 42.374 18.566 7.102 -2.271 0.717 -1.785 H6 VBE 32 VBE H7 H7 H 0 1 N N N 35.310 23.673 7.424 -0.641 5.031 0.069 H7 VBE 33 VBE H8 H8 H 0 1 N N N 35.536 22.346 6.235 -2.254 4.365 -0.285 H8 VBE 34 VBE H9 H9 H 0 1 N N N 34.723 22.018 7.803 -1.954 5.198 1.259 H9 VBE 35 VBE H10 H10 H 0 1 N N N 37.324 23.016 8.331 -1.274 3.128 2.057 H10 VBE 36 VBE H11 H11 H 0 1 N N N 39.332 21.636 8.185 0.573 1.187 1.767 H11 VBE 37 VBE H12 H12 H 0 1 N N N 38.520 21.003 9.656 -1.040 0.521 1.414 H12 VBE 38 VBE H13 H13 H 0 1 N N N 38.074 18.518 9.712 1.993 -0.031 -1.419 H13 VBE 39 VBE H14 H14 H 0 1 N N N 39.451 17.606 9.006 2.171 1.275 -0.222 H14 VBE 40 VBE H15 H15 H 0 1 N N N 39.785 19.897 10.974 2.440 -0.469 1.567 H15 VBE 41 VBE H16 H16 H 0 1 N N N 40.139 18.176 12.721 2.505 -2.359 -0.828 H16 VBE 42 VBE H17 H17 H 0 1 N N N 38.468 18.142 12.064 2.867 -2.806 0.856 H17 VBE 43 VBE H18 H18 H 0 1 N N N 39.660 16.901 11.550 1.224 -2.291 0.406 H18 VBE 44 VBE H19 H19 H 0 1 N N N 41.794 20.806 10.224 3.991 -1.007 -1.806 H19 VBE 45 VBE H20 H20 H 0 1 N N N 44.184 20.576 9.704 6.393 -0.672 -2.230 H20 VBE 46 VBE H21 H21 H 0 1 N N N 43.826 16.339 9.890 6.959 0.436 1.849 H21 VBE 47 VBE H22 H22 H 0 1 N N N 38.444 17.075 6.417 -1.651 -2.422 1.077 H22 VBE 48 VBE H23 H23 H 0 1 N N N 44.180 17.267 6.869 -5.907 0.701 -1.219 H23 VBE 49 VBE H24 H24 H 0 1 N N N 43.918 15.549 7.323 -4.602 1.908 -1.322 H24 VBE 50 VBE H25 H25 H 0 1 N N N 44.036 16.013 5.592 -4.797 0.695 -2.610 H25 VBE 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VBE C21 C20 SING N N 1 VBE O23 C22 DOUB N N 2 VBE C20 C22 SING N N 3 VBE C20 C19 DOUB N N 4 VBE C22 N24 SING N N 5 VBE O17 C16 DOUB N N 6 VBE C19 C18 SING N N 7 VBE N24 C25 SING N N 8 VBE N24 C26 SING N N 9 VBE C18 C26 DOUB N N 10 VBE C18 C16 SING N N 11 VBE C16 N06 SING N N 12 VBE C01 N02 SING N N 13 VBE O04 C03 DOUB N N 14 VBE N02 C03 SING N N 15 VBE C03 C05 SING N N 16 VBE N06 C05 SING N N 17 VBE N06 C07 SING N N 18 VBE C07 C08 SING N N 19 VBE C13 C12 DOUB Y N 20 VBE C13 C14 SING Y N 21 VBE C12 C11 SING Y N 22 VBE C14 C15 DOUB Y N 23 VBE C11 C10 DOUB Y N 24 VBE C15 C10 SING Y N 25 VBE C10 C08 SING N N 26 VBE C08 C09 SING N N 27 VBE C13 H1 SING N N 28 VBE C15 H2 SING N N 29 VBE C21 H3 SING N N 30 VBE C21 H4 SING N N 31 VBE C21 H5 SING N N 32 VBE C26 H6 SING N N 33 VBE C01 H7 SING N N 34 VBE C01 H8 SING N N 35 VBE C01 H9 SING N N 36 VBE N02 H10 SING N N 37 VBE C05 H11 SING N N 38 VBE C05 H12 SING N N 39 VBE C07 H13 SING N N 40 VBE C07 H14 SING N N 41 VBE C08 H15 SING N N 42 VBE C09 H16 SING N N 43 VBE C09 H17 SING N N 44 VBE C09 H18 SING N N 45 VBE C11 H19 SING N N 46 VBE C12 H20 SING N N 47 VBE C14 H21 SING N N 48 VBE C19 H22 SING N N 49 VBE C25 H23 SING N N 50 VBE C25 H24 SING N N 51 VBE C25 H25 SING N N 52 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VBE InChI InChI 1.03 "InChI=1S/C20H25N3O3/c1-14-10-17(12-22(4)19(14)25)20(26)23(13-18(24)21-3)11-15(2)16-8-6-5-7-9-16/h5-10,12,15H,11,13H2,1-4H3,(H,21,24)/t15-/m1/s1" VBE InChIKey InChI 1.03 HZVLFNBTVSYMSI-OAHLLOKOSA-N VBE SMILES_CANONICAL CACTVS 3.385 "CNC(=O)CN(C[C@@H](C)c1ccccc1)C(=O)C2=CN(C)C(=O)C(=C2)C" VBE SMILES CACTVS 3.385 "CNC(=O)CN(C[CH](C)c1ccccc1)C(=O)C2=CN(C)C(=O)C(=C2)C" VBE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=CC(=CN(C1=O)C)C(=O)N(C[C@@H](C)c2ccccc2)CC(=O)NC" VBE SMILES "OpenEye OEToolkits" 2.0.7 "CC1=CC(=CN(C1=O)C)C(=O)N(CC(C)c2ccccc2)CC(=O)NC" # _pdbx_chem_comp_identifier.comp_id VBE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1,5-dimethyl-~{N}-[2-(methylamino)-2-oxidanylidene-ethyl]-6-oxidanylidene-~{N}-[(2~{S})-2-phenylpropyl]pyridine-3-carboxamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VBE _pdbx_chem_comp_synonyms.name "1,5-dimethyl-N-(2-(methylamino)-2-oxoethyl)-6-oxo-N-(2-phenylpropyl)-1,6-dihydropyridine-3-carboxamide" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VBE "Create component" 2021-05-04 PDBE VBE "Initial release" 2021-07-21 RCSB ##