data_VBF # _chem_comp.id VBF _chem_comp.name "3-[2-azanyl-6-[2-oxidanylidene-1-[[6-(2-oxidanylpropan-2-yl)pyridin-2-yl]methyl]pyridin-4-yl]pyrimidin-4-yl]-2-methyl-benzenecarbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H24 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-14 _chem_comp.pdbx_modified_date 2023-08-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 452.508 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VBF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8JWY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VBF C10 C1 C 0 1 Y N N -7.806 -6.031 51.932 3.580 0.378 0.485 C10 VBF 1 VBF C13 C2 C 0 1 N N N -9.394 -8.828 53.699 0.067 1.424 -0.381 C13 VBF 2 VBF C15 C3 C 0 1 N N N -10.247 -10.452 55.218 -2.023 2.535 -0.720 C15 VBF 3 VBF C17 C4 C 0 1 N N N -11.100 -12.576 54.506 -3.906 1.421 -1.797 C17 VBF 4 VBF C20 C5 C 0 1 Y N N -14.887 -12.547 54.070 -6.298 1.425 1.116 C20 VBF 5 VBF C21 C6 C 0 1 Y N N -15.240 -11.882 55.236 -6.488 0.059 1.260 C21 VBF 6 VBF C22 C7 C 0 1 Y N N -14.247 -11.475 56.109 -5.830 -0.806 0.407 C22 VBF 7 VBF C24 C8 C 0 1 N N N -15.556 -9.591 57.091 -5.197 -3.025 -0.501 C24 VBF 8 VBF C28 C9 C 0 1 N N N -10.230 -10.953 52.956 -1.775 0.310 -1.450 C28 VBF 9 VBF C01 C10 C 0 1 N N N -6.400 -7.860 49.822 6.269 0.716 -0.518 C01 VBF 10 VBF C02 C11 C 0 1 Y N N -6.713 -6.366 49.696 5.775 -0.643 -0.096 C02 VBF 11 VBF C03 C12 C 0 1 Y N N -6.316 -5.776 48.508 6.617 -1.752 -0.181 C03 VBF 12 VBF C04 C13 C 0 1 N N N -5.628 -6.634 47.445 7.954 -1.602 -0.671 C04 VBF 13 VBF C06 C14 C 0 1 Y N N -6.536 -4.430 48.268 6.152 -3.009 0.212 C06 VBF 14 VBF C07 C15 C 0 1 Y N N -7.161 -3.660 49.232 4.863 -3.154 0.685 C07 VBF 15 VBF C08 C16 C 0 1 Y N N -7.558 -4.241 50.423 4.025 -2.059 0.771 C08 VBF 16 VBF C09 C17 C 0 1 Y N N -7.351 -5.589 50.681 4.479 -0.797 0.386 C09 VBF 17 VBF C11 C18 C 0 1 Y N N -8.402 -7.267 52.165 2.272 0.313 -0.002 C11 VBF 18 VBF C12 C19 C 0 1 Y N N -8.822 -7.586 53.446 1.464 1.442 0.120 C12 VBF 19 VBF C14 C20 C 0 1 N N N -9.689 -9.203 55.000 -0.754 2.567 -0.259 C14 VBF 20 VBF C18 C21 C 0 1 Y N N -12.595 -12.344 54.751 -4.832 0.947 -0.706 C18 VBF 21 VBF C19 C22 C 0 1 Y N N -13.535 -12.772 53.834 -5.453 1.871 0.112 C19 VBF 22 VBF C23 C23 C 0 1 N N N -14.599 -10.737 57.402 -6.029 -2.293 0.554 C23 VBF 23 VBF C25 C24 C 0 1 N N N -15.247 -11.702 58.392 -5.583 -2.731 1.950 C25 VBF 24 VBF C30 C25 C 0 1 N N N -9.663 -9.714 52.664 -0.451 0.289 -0.982 C30 VBF 25 VBF C32 C26 C 0 1 Y N N -8.116 -5.525 54.174 3.207 2.560 1.142 C32 VBF 26 VBF N05 N1 N 0 1 N N N -5.118 -7.277 46.662 9.015 -1.483 -1.059 N05 VBF 27 VBF N16 N2 N 0 1 N N N -10.499 -11.277 54.216 -2.527 1.416 -1.303 N16 VBF 28 VBF N27 N3 N 0 1 Y N N -12.976 -11.712 55.849 -5.028 -0.346 -0.534 N27 VBF 29 VBF N31 N4 N 0 1 Y N N -8.669 -6.702 54.421 1.962 2.536 0.692 N31 VBF 30 VBF N33 N5 N 0 1 N N N -7.961 -4.572 55.257 3.687 3.718 1.730 N33 VBF 31 VBF N34 N6 N 0 1 Y N N -7.701 -5.198 52.960 4.005 1.509 1.044 N34 VBF 32 VBF O26 O1 O 0 1 N N N -13.419 -10.221 57.950 -7.411 -2.608 0.374 O26 VBF 33 VBF O29 O2 O 0 1 N N N -10.471 -11.722 52.085 -2.250 -0.684 -1.977 O29 VBF 34 VBF H1 H1 H 0 1 N N N -10.481 -10.758 56.227 -2.647 3.411 -0.624 H1 VBF 35 VBF H2 H2 H 0 1 N N N -10.960 -13.254 53.652 -3.986 0.755 -2.656 H2 VBF 36 VBF H3 H3 H 0 1 N N N -10.636 -13.014 55.402 -4.182 2.432 -2.094 H3 VBF 37 VBF H4 H4 H 0 1 N N N -15.638 -12.879 53.369 -6.800 2.124 1.768 H4 VBF 38 VBF H5 H5 H 0 1 N N N -16.278 -11.685 55.459 -7.143 -0.324 2.029 H5 VBF 39 VBF H6 H6 H 0 1 N N N -15.809 -9.061 58.021 -4.143 -2.785 -0.363 H6 VBF 40 VBF H7 H7 H 0 1 N N N -15.076 -8.893 56.390 -5.341 -4.101 -0.395 H7 VBF 41 VBF H8 H8 H 0 1 N N N -16.474 -9.993 56.637 -5.514 -2.713 -1.496 H8 VBF 42 VBF H9 H9 H 0 1 N N N -5.404 -7.990 50.271 6.639 1.256 0.354 H9 VBF 43 VBF H10 H10 H 0 1 N N N -7.156 -8.340 50.461 7.075 0.601 -1.243 H10 VBF 44 VBF H11 H11 H 0 1 N N N -6.415 -8.323 48.824 5.451 1.276 -0.971 H11 VBF 45 VBF H12 H12 H 0 1 N N N -6.222 -3.985 47.335 6.802 -3.869 0.147 H12 VBF 46 VBF H13 H13 H 0 1 N N N -7.338 -2.609 49.056 4.508 -4.127 0.988 H13 VBF 47 VBF H14 H14 H 0 1 N N N -8.041 -3.630 51.171 3.018 -2.179 1.141 H14 VBF 48 VBF H15 H15 H 0 1 N N N -8.536 -7.970 51.356 1.897 -0.590 -0.461 H15 VBF 49 VBF H16 H16 H 0 1 N N N -9.488 -8.536 55.826 -0.368 3.464 0.203 H16 VBF 50 VBF H17 H17 H 0 1 N N N -13.220 -13.281 52.935 -5.281 2.928 -0.029 H17 VBF 51 VBF H18 H18 H 0 1 N N N -15.497 -11.164 59.319 -6.176 -2.210 2.701 H18 VBF 52 VBF H19 H19 H 0 1 N N N -16.165 -12.118 57.951 -5.727 -3.807 2.056 H19 VBF 53 VBF H20 H20 H 0 1 N N N -14.546 -12.519 58.620 -4.529 -2.491 2.088 H20 VBF 54 VBF H21 H21 H 0 1 N N N -9.435 -9.445 51.643 0.154 -0.599 -1.089 H21 VBF 55 VBF H22 H22 H 0 1 N N N -7.530 -3.739 54.910 3.113 4.496 1.808 H22 VBF 56 VBF H23 H23 H 0 1 N N N -8.859 -4.349 55.636 4.597 3.750 2.064 H23 VBF 57 VBF H24 H24 H 0 1 N N N -13.619 -9.758 58.755 -7.613 -3.550 0.455 H24 VBF 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VBF N05 C04 TRIP N N 1 VBF C04 C03 SING N N 2 VBF C06 C03 DOUB Y N 3 VBF C06 C07 SING Y N 4 VBF C03 C02 SING Y N 5 VBF C07 C08 DOUB Y N 6 VBF C02 C01 SING N N 7 VBF C02 C09 DOUB Y N 8 VBF C08 C09 SING Y N 9 VBF C09 C10 SING N N 10 VBF C10 C11 DOUB Y N 11 VBF C10 N34 SING Y N 12 VBF O29 C28 DOUB N N 13 VBF C11 C12 SING Y N 14 VBF C30 C28 SING N N 15 VBF C30 C13 DOUB N N 16 VBF C28 N16 SING N N 17 VBF N34 C32 DOUB Y N 18 VBF C12 C13 SING N N 19 VBF C12 N31 DOUB Y N 20 VBF C13 C14 SING N N 21 VBF C19 C20 DOUB Y N 22 VBF C19 C18 SING Y N 23 VBF C20 C21 SING Y N 24 VBF C32 N31 SING Y N 25 VBF C32 N33 SING N N 26 VBF N16 C17 SING N N 27 VBF N16 C15 SING N N 28 VBF C17 C18 SING N N 29 VBF C18 N27 DOUB Y N 30 VBF C14 C15 DOUB N N 31 VBF C21 C22 DOUB Y N 32 VBF N27 C22 SING Y N 33 VBF C22 C23 SING N N 34 VBF C24 C23 SING N N 35 VBF C23 O26 SING N N 36 VBF C23 C25 SING N N 37 VBF C15 H1 SING N N 38 VBF C17 H2 SING N N 39 VBF C17 H3 SING N N 40 VBF C20 H4 SING N N 41 VBF C21 H5 SING N N 42 VBF C24 H6 SING N N 43 VBF C24 H7 SING N N 44 VBF C24 H8 SING N N 45 VBF C01 H9 SING N N 46 VBF C01 H10 SING N N 47 VBF C01 H11 SING N N 48 VBF C06 H12 SING N N 49 VBF C07 H13 SING N N 50 VBF C08 H14 SING N N 51 VBF C11 H15 SING N N 52 VBF C14 H16 SING N N 53 VBF C19 H17 SING N N 54 VBF C25 H18 SING N N 55 VBF C25 H19 SING N N 56 VBF C25 H20 SING N N 57 VBF C30 H21 SING N N 58 VBF N33 H22 SING N N 59 VBF N33 H23 SING N N 60 VBF O26 H24 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VBF InChI InChI 1.06 "InChI=1S/C26H24N6O2/c1-16-18(14-27)6-4-8-20(16)22-13-21(30-25(28)31-22)17-10-11-32(24(33)12-17)15-19-7-5-9-23(29-19)26(2,3)34/h4-13,34H,15H2,1-3H3,(H2,28,30,31)" VBF InChIKey InChI 1.06 LMPHIHXCTONPFG-UHFFFAOYSA-N VBF SMILES_CANONICAL CACTVS 3.385 "Cc1c(cccc1c2cc(nc(N)n2)C3=CC(=O)N(Cc4cccc(n4)C(C)(C)O)C=C3)C#N" VBF SMILES CACTVS 3.385 "Cc1c(cccc1c2cc(nc(N)n2)C3=CC(=O)N(Cc4cccc(n4)C(C)(C)O)C=C3)C#N" VBF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1c2cc(nc(n2)N)C3=CC(=O)N(C=C3)Cc4cccc(n4)C(C)(C)O)C#N" VBF SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1c2cc(nc(n2)N)C3=CC(=O)N(C=C3)Cc4cccc(n4)C(C)(C)O)C#N" # _pdbx_chem_comp_identifier.comp_id VBF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[2-azanyl-6-[2-oxidanylidene-1-[[6-(2-oxidanylpropan-2-yl)pyridin-2-yl]methyl]pyridin-4-yl]pyrimidin-4-yl]-2-methyl-benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VBF "Create component" 2023-07-14 PDBJ VBF "Initial release" 2023-08-16 RCSB #