data_VBJ # _chem_comp.id VBJ _chem_comp.name "~{N}-[3-[2,6-bis(azanyl)-5-(2-cyclopropylethynyl)pyrimidin-4-yl]phenyl]methanesulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H17 N5 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-01 _chem_comp.pdbx_modified_date 2024-03-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 343.403 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VBJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8COX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VBJ N1 N1 N 0 1 N N N N N N 38.772 -12.531 10.406 3.230 -0.341 0.946 N1 VBJ 1 VBJ N3 N2 N 0 1 N N N N N N 33.824 -8.658 15.546 -2.396 -4.505 -0.120 N3 VBJ 2 VBJ C4 C1 C 0 1 Y N N N N N 35.122 -12.029 10.150 0.833 1.780 -0.867 C4 VBJ 3 VBJ C5 C2 C 0 1 Y N N N N N 34.918 -11.016 11.060 -0.311 1.009 -0.801 C5 VBJ 4 VBJ C6 C3 C 0 1 Y N N N N N 35.983 -10.472 11.767 -0.285 -0.224 -0.149 C6 VBJ 5 VBJ C7 C4 C 0 1 Y N N N N N 35.760 -9.319 12.673 -1.511 -1.052 -0.077 C7 VBJ 6 VBJ C8 C5 C 0 1 Y N N N N N 34.646 -8.456 14.513 -2.524 -3.129 -0.064 C8 VBJ 7 VBJ C10 C6 C 0 1 Y N N N N N 36.289 -8.051 12.481 -2.776 -0.449 0.040 C10 VBJ 8 VBJ C13 C7 C 0 1 N N N N N N 39.045 -7.202 9.671 -3.158 3.609 0.188 C13 VBJ 9 VBJ C15 C8 C 0 1 N N N N N N 39.146 -8.004 8.435 -2.053 4.397 0.892 C15 VBJ 10 VBJ C1 C9 C 0 1 N N N N N N 39.148 -11.111 8.182 4.387 -1.276 -1.361 C1 VBJ 11 VBJ C11 C10 C 0 1 N N N N N N 37.192 -7.809 11.411 -2.910 0.976 0.092 C11 VBJ 12 VBJ C12 C11 C 0 1 N N N N N N 38.038 -7.585 10.616 -3.020 2.144 0.134 C12 VBJ 13 VBJ C14 C12 C 0 1 N N N N N N 38.575 -6.661 8.377 -2.172 4.442 -0.633 C14 VBJ 14 VBJ C16 C13 C 0 1 Y N N N N N 37.264 -10.961 11.524 0.898 -0.674 0.434 C16 VBJ 15 VBJ C2 C14 C 0 1 Y N N N N N 37.470 -11.988 10.617 2.042 0.106 0.363 C2 VBJ 16 VBJ C3 C15 C 0 1 Y N N N N N 36.391 -12.521 9.935 2.007 1.331 -0.294 C3 VBJ 17 VBJ C9 C16 C 0 1 Y N N N N N 35.993 -7.019 13.375 -3.906 -1.286 0.103 C9 VBJ 18 VBJ N2 N3 N 0 1 Y N N N N N 34.905 -9.486 13.682 -1.434 -2.381 -0.127 N2 VBJ 19 VBJ N4 N4 N 0 1 Y N N N N N 35.163 -7.230 14.388 -3.735 -2.602 0.051 N4 VBJ 20 VBJ N5 N5 N 0 1 N N N N N N 36.487 -5.788 13.208 -5.175 -0.747 0.219 N5 VBJ 21 VBJ O1 O1 O 0 1 N N N N N N 40.437 -10.737 10.396 4.748 1.129 -0.262 O1 VBJ 22 VBJ O2 O2 O 0 1 N N N N N N 40.895 -12.734 9.109 5.613 -0.836 0.968 O2 VBJ 23 VBJ S1 S1 S 0 1 N N N N N N 39.947 -11.789 9.582 4.654 -0.241 0.105 S1 VBJ 24 VBJ H4 H1 H 0 1 N N N N N N 38.628 -13.405 9.941 3.222 -0.706 1.844 H4 VBJ 25 VBJ H8 H2 H 0 1 N N N N N N 33.508 -9.607 15.541 -1.518 -4.907 -0.205 H8 VBJ 26 VBJ H9 H3 H 0 1 N N N N N N 34.311 -8.474 16.400 -3.185 -5.068 -0.076 H9 VBJ 27 VBJ H6 H4 H 0 1 N N N N N N 34.285 -12.439 9.604 0.810 2.734 -1.372 H6 VBJ 28 VBJ H7 H5 H 0 1 N N N N N N 33.919 -10.640 11.226 -1.226 1.361 -1.253 H7 VBJ 29 VBJ H12 H6 H 0 1 N N N N N N 39.983 -6.786 10.068 -4.179 3.981 0.279 H12 VBJ 30 VBJ H16 H7 H 0 1 N N N N N N 38.498 -8.882 8.296 -2.345 5.289 1.446 H16 VBJ 31 VBJ H15 H8 H 0 1 N N N N N N 40.131 -8.201 7.988 -1.223 3.831 1.317 H15 VBJ 32 VBJ H1 H9 H 0 1 N N N N N N 38.402 -10.371 8.507 4.082 -2.275 -1.049 H1 VBJ 33 VBJ H2 H10 H 0 1 N N N N N N 39.892 -10.622 7.536 3.607 -0.835 -1.980 H2 VBJ 34 VBJ H3 H11 H 0 1 N N N N N N 38.647 -11.914 7.621 5.313 -1.340 -1.933 H3 VBJ 35 VBJ H13 H12 H 0 1 N N N N N N 39.131 -5.848 7.887 -1.421 3.905 -1.212 H13 VBJ 36 VBJ H14 H13 H 0 1 N N N N N N 37.498 -6.530 8.195 -2.543 5.363 -1.082 H14 VBJ 37 VBJ H17 H14 H 0 1 N N N N N N 38.106 -10.535 12.048 0.924 -1.628 0.940 H17 VBJ 38 VBJ H5 H15 H 0 1 N N N N N N 36.544 -13.326 9.231 2.899 1.938 -0.349 H5 VBJ 39 VBJ H11 H16 H 0 1 N N N N N N 36.128 -5.185 13.920 -5.291 0.216 0.257 H11 VBJ 40 VBJ H10 H17 H 0 1 N N N N N N 37.485 -5.818 13.269 -5.948 -1.330 0.262 H10 VBJ 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VBJ C1 S1 SING N N 1 VBJ C14 C15 SING N N 2 VBJ C14 C13 SING N N 3 VBJ C15 C13 SING N N 4 VBJ O2 S1 DOUB N N 5 VBJ S1 O1 DOUB N N 6 VBJ S1 N1 SING N N 7 VBJ C13 C12 SING N N 8 VBJ C3 C4 DOUB Y N 9 VBJ C3 C2 SING Y N 10 VBJ C4 C5 SING Y N 11 VBJ N1 C2 SING N N 12 VBJ C12 C11 TRIP N N 13 VBJ C2 C16 DOUB Y N 14 VBJ C5 C6 DOUB Y N 15 VBJ C11 C10 SING N N 16 VBJ C16 C6 SING Y N 17 VBJ C6 C7 SING N N 18 VBJ C10 C7 DOUB Y N 19 VBJ C10 C9 SING Y N 20 VBJ C7 N2 SING Y N 21 VBJ N5 C9 SING N N 22 VBJ C9 N4 DOUB Y N 23 VBJ N2 C8 DOUB Y N 24 VBJ N4 C8 SING Y N 25 VBJ C8 N3 SING N N 26 VBJ N1 H4 SING N N 27 VBJ N3 H8 SING N N 28 VBJ N3 H9 SING N N 29 VBJ C4 H6 SING N N 30 VBJ C5 H7 SING N N 31 VBJ C13 H12 SING N N 32 VBJ C15 H16 SING N N 33 VBJ C15 H15 SING N N 34 VBJ C1 H1 SING N N 35 VBJ C1 H2 SING N N 36 VBJ C1 H3 SING N N 37 VBJ C14 H13 SING N N 38 VBJ C14 H14 SING N N 39 VBJ C16 H17 SING N N 40 VBJ C3 H5 SING N N 41 VBJ N5 H11 SING N N 42 VBJ N5 H10 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VBJ InChI InChI 1.06 "InChI=1S/C16H17N5O2S/c1-24(22,23)21-12-4-2-3-11(9-12)14-13(8-7-10-5-6-10)15(17)20-16(18)19-14/h2-4,9-10,21H,5-6H2,1H3,(H4,17,18,19,20)" VBJ InChIKey InChI 1.06 CVABKGUTTDGMDK-UHFFFAOYSA-N VBJ SMILES_CANONICAL CACTVS 3.385 "C[S](=O)(=O)Nc1cccc(c1)c2nc(N)nc(N)c2C#CC3CC3" VBJ SMILES CACTVS 3.385 "C[S](=O)(=O)Nc1cccc(c1)c2nc(N)nc(N)c2C#CC3CC3" VBJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)Nc1cccc(c1)c2c(c(nc(n2)N)N)C#CC3CC3" VBJ SMILES "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)Nc1cccc(c1)c2c(c(nc(n2)N)N)C#CC3CC3" # _pdbx_chem_comp_identifier.comp_id VBJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[3-[2,6-bis(azanyl)-5-(2-cyclopropylethynyl)pyrimidin-4-yl]phenyl]methanesulfonamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VBJ "Create component" 2023-03-01 PDBE VBJ "Initial release" 2024-03-13 RCSB #