data_VBK # _chem_comp.id VBK _chem_comp.name "[(4S)-6,7-dihydro-4H-thieno[3,2-c]pyran-4-yl]methanamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H11 N O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4H,6H,7H-thieno[3,2-c]pyran-4-ylmethanamine; 6,7-dihydro-4H-thieno[3,2-c]pyran-4-ylmethanamine; 12225896" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-05 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 169.244 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VBK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OF9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VBK C01 C1 C 0 1 N N S 39.757 26.045 -5.710 -1.355 -0.123 -0.371 C01 VBK 1 VBK C02 C2 C 0 1 Y N N 39.357 25.106 -4.609 0.134 -0.398 -0.208 C02 VBK 2 VBK C03 C3 C 0 1 N N N 41.602 23.937 -4.837 0.620 2.046 0.205 C03 VBK 3 VBK C04 C4 C 0 1 Y N N 40.249 24.129 -4.222 1.013 0.592 0.052 C04 VBK 4 VBK C05 C5 C 0 1 N N N 41.857 24.953 -5.966 -0.796 2.214 -0.362 C05 VBK 5 VBK C06 C6 C 0 1 N N N 39.170 27.445 -5.599 -2.159 -1.174 0.396 C06 VBK 6 VBK C07 C7 C 0 1 Y N N 38.150 25.037 -3.843 0.721 -1.653 -0.308 C07 VBK 7 VBK C08 C8 C 0 1 Y N N 38.177 24.020 -2.914 2.040 -1.688 -0.134 C08 VBK 8 VBK N01 N1 N 0 1 N N N 38.873 28.004 -6.886 -3.592 -0.977 0.139 N01 VBK 9 VBK O01 O1 O 0 1 N N N 41.195 26.200 -5.715 -1.633 1.177 0.157 O01 VBK 10 VBK S01 S1 S 0 1 Y N N 39.652 23.151 -2.969 2.636 -0.064 0.179 S01 VBK 11 VBK H01 H1 H 0 1 N N N 39.437 25.613 -6.670 -1.621 -0.156 -1.428 H01 VBK 12 VBK H02 H2 H 0 1 N N N 41.666 22.920 -5.250 0.630 2.321 1.260 H02 VBK 13 VBK H03 H3 H 0 1 N N N 42.370 24.066 -4.060 1.317 2.676 -0.347 H03 VBK 14 VBK H04 H4 H 0 1 N N N 41.484 24.535 -6.913 -1.193 3.185 -0.068 H04 VBK 15 VBK H05 H5 H 0 1 N N N 42.939 25.133 -6.046 -0.763 2.146 -1.449 H05 VBK 16 VBK H07 H6 H 0 1 N N N 39.895 28.095 -5.088 -1.865 -2.170 0.065 H07 VBK 17 VBK H06 H7 H 0 1 N N N 38.242 27.396 -5.010 -1.965 -1.073 1.464 H06 VBK 18 VBK H08 H8 H 0 1 N N N 37.313 25.706 -3.978 0.144 -2.543 -0.513 H08 VBK 19 VBK H09 H9 H 0 1 N N N 37.367 23.798 -2.234 2.650 -2.578 -0.178 H09 VBK 20 VBK H1 H10 H 0 1 N N N 38.491 28.921 -6.772 -3.789 -1.002 -0.850 H1 VBK 21 VBK H11 H11 H 0 1 N N N 39.712 28.058 -7.427 -4.146 -1.660 0.635 H11 VBK 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VBK N01 C06 SING N N 1 VBK C05 O01 SING N N 2 VBK C05 C03 SING N N 3 VBK O01 C01 SING N N 4 VBK C01 C06 SING N N 5 VBK C01 C02 SING N N 6 VBK C03 C04 SING N N 7 VBK C02 C04 DOUB Y N 8 VBK C02 C07 SING Y N 9 VBK C04 S01 SING Y N 10 VBK C07 C08 DOUB Y N 11 VBK S01 C08 SING Y N 12 VBK C01 H01 SING N N 13 VBK C03 H02 SING N N 14 VBK C03 H03 SING N N 15 VBK C05 H04 SING N N 16 VBK C05 H05 SING N N 17 VBK C06 H07 SING N N 18 VBK C06 H06 SING N N 19 VBK C07 H08 SING N N 20 VBK C08 H09 SING N N 21 VBK N01 H1 SING N N 22 VBK N01 H11 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VBK InChI InChI 1.03 "InChI=1S/C8H11NOS/c9-5-7-6-2-4-11-8(6)1-3-10-7/h2,4,7H,1,3,5,9H2/t7-/m1/s1" VBK InChIKey InChI 1.03 NMVKUIFBCHQTHO-SSDOTTSWSA-N VBK SMILES_CANONICAL CACTVS 3.385 "NC[C@H]1OCCc2sccc12" VBK SMILES CACTVS 3.385 "NC[CH]1OCCc2sccc12" VBK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1csc2c1[C@H](OCC2)CN" VBK SMILES "OpenEye OEToolkits" 2.0.7 "c1csc2c1C(OCC2)CN" # _pdbx_chem_comp_identifier.comp_id VBK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(4~{S})-6,7-dihydro-4~{H}-thieno[3,2-c]pyran-4-yl]methanamine" # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 VBK "4H,6H,7H-thieno[3,2-c]pyran-4-ylmethanamine" PUBCHEM ? 2 VBK "6,7-dihydro-4H-thieno[3,2-c]pyran-4-ylmethanamine" PUBCHEM ? 3 VBK 12225896 PUBCHEM ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VBK "Create component" 2021-05-05 PDBE VBK "Initial release" 2022-11-02 RCSB #