data_VBO # _chem_comp.id VBO _chem_comp.name "methyl 3-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)propanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H10 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-29 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 198.176 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VBO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FLF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VBO N1 N1 N 0 1 N N N 43.847 23.336 24.042 2.798 -0.911 0.245 N1 VBO 1 VBO C7 C1 C 0 1 N N N 43.246 24.555 24.370 1.500 -0.966 -0.108 C7 VBO 2 VBO O1 O1 O 0 1 N N N 44.820 29.040 26.239 -3.217 -0.054 -1.123 O1 VBO 3 VBO C1 C2 C 0 1 N N N 44.874 28.138 27.052 -2.912 0.116 0.034 C1 VBO 4 VBO C5 C3 C 0 1 N N N 45.457 23.653 25.814 2.750 1.452 -0.083 C5 VBO 5 VBO C6 C4 C 0 1 N N N 44.963 22.845 24.737 3.447 0.271 0.268 C6 VBO 6 VBO C4 C5 C 0 1 N N N 44.898 24.806 26.135 1.449 1.369 -0.433 C4 VBO 7 VBO C3 C6 C 0 1 N N N 43.267 26.549 25.836 -0.585 0.059 -0.822 C3 VBO 8 VBO O3 O2 O 0 1 N N N 42.283 24.981 23.758 0.928 -2.039 -0.123 O3 VBO 9 VBO C2 C7 C 0 1 N N N 43.799 27.069 27.205 -1.459 0.210 0.424 C2 VBO 10 VBO O2 O3 O 0 1 N N N 45.445 21.810 24.409 4.621 0.322 0.587 O2 VBO 11 VBO N N2 N 0 1 N N N 43.820 25.276 25.450 0.827 0.150 -0.443 N VBO 12 VBO O O4 O 0 1 N N N 45.975 28.168 27.853 -3.867 0.222 0.971 O VBO 13 VBO C C8 C 0 1 N N N 46.986 29.148 27.736 -5.244 0.123 0.523 C VBO 14 VBO H1 H1 H 0 1 N N N 43.470 22.797 23.289 3.267 -1.724 0.488 H1 VBO 15 VBO H2 H2 H 0 1 N N N 46.311 23.309 26.379 3.253 2.408 -0.071 H2 VBO 16 VBO H3 H3 H 0 1 N N N 45.302 25.384 26.953 0.901 2.260 -0.702 H3 VBO 17 VBO H4 H4 H 0 1 N N N 43.520 27.288 25.061 -0.776 -0.910 -1.284 H4 VBO 18 VBO H5 H5 H 0 1 N N N 42.174 26.448 25.903 -0.823 0.852 -1.531 H5 VBO 19 VBO H6 H6 H 0 1 N N N 42.957 27.495 27.770 -1.269 1.179 0.886 H6 VBO 20 VBO H7 H7 H 0 1 N N N 44.223 26.221 27.762 -1.222 -0.583 1.133 H7 VBO 21 VBO H8 H8 H 0 1 N N N 47.766 28.962 28.489 -5.451 0.915 -0.197 H8 VBO 22 VBO H9 H9 H 0 1 N N N 47.428 29.100 26.730 -5.403 -0.847 0.050 H9 VBO 23 VBO H10 H10 H 0 1 N N N 46.550 30.145 27.898 -5.913 0.224 1.377 H10 VBO 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VBO O3 C7 DOUB N N 1 VBO N1 C7 SING N N 2 VBO N1 C6 SING N N 3 VBO C7 N SING N N 4 VBO O2 C6 DOUB N N 5 VBO C6 C5 SING N N 6 VBO N C3 SING N N 7 VBO N C4 SING N N 8 VBO C5 C4 DOUB N N 9 VBO C3 C2 SING N N 10 VBO O1 C1 DOUB N N 11 VBO C1 C2 SING N N 12 VBO C1 O SING N N 13 VBO C O SING N N 14 VBO N1 H1 SING N N 15 VBO C5 H2 SING N N 16 VBO C4 H3 SING N N 17 VBO C3 H4 SING N N 18 VBO C3 H5 SING N N 19 VBO C2 H6 SING N N 20 VBO C2 H7 SING N N 21 VBO C H8 SING N N 22 VBO C H9 SING N N 23 VBO C H10 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VBO SMILES ACDLabs 12.01 "O=C(CCN1C=CC(=O)NC1=O)OC" VBO InChI InChI 1.06 "InChI=1S/C8H10N2O4/c1-14-7(12)3-5-10-4-2-6(11)9-8(10)13/h2,4H,3,5H2,1H3,(H,9,11,13)" VBO InChIKey InChI 1.06 WFCIIRXTEXKYTF-UHFFFAOYSA-N VBO SMILES_CANONICAL CACTVS 3.385 "COC(=O)CCN1C=CC(=O)NC1=O" VBO SMILES CACTVS 3.385 "COC(=O)CCN1C=CC(=O)NC1=O" VBO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)CCN1C=CC(=O)NC1=O" VBO SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)CCN1C=CC(=O)NC1=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VBO "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 3-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)propanoate" VBO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl 3-[2,4-bis(oxidanylidene)pyrimidin-1-yl]propanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VBO "Create component" 2022-08-29 RCSB VBO "Initial release" 2022-11-02 RCSB #