data_VBY # _chem_comp.id VBY _chem_comp.name "5-(acryloylamino)-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H22 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-24 _chem_comp.pdbx_modified_date 2020-07-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.433 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VBY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JIW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VBY C1 C1 C 0 1 N N N 49.760 31.543 0.394 -0.182 -1.743 0.132 C1 VBY 1 VBY C10 C2 C 0 1 Y N N 48.358 33.583 0.833 -2.502 -2.578 -0.216 C10 VBY 2 VBY C11 C3 C 0 1 Y N N 53.169 28.287 -1.726 4.742 1.649 -0.219 C11 VBY 3 VBY C12 C4 C 0 1 Y N N 54.352 28.837 -1.201 4.094 2.811 0.232 C12 VBY 4 VBY C13 C5 C 0 1 Y N N 50.725 33.860 0.215 -2.165 -0.250 0.327 C13 VBY 5 VBY C14 C6 C 0 1 Y N N 50.718 27.931 -1.508 4.734 -0.765 -0.553 C14 VBY 6 VBY C16 C7 C 0 1 N N N 47.197 32.652 1.120 -1.943 -3.953 -0.477 C16 VBY 7 VBY C17 C8 C 0 1 Y N N 48.229 34.970 0.906 -3.865 -2.367 -0.264 C17 VBY 8 VBY C18 C9 C 0 1 Y N N 53.179 27.586 -2.937 6.031 1.701 -0.777 C18 VBY 9 VBY C19 C10 C 0 1 Y N N 50.579 35.258 0.326 -3.535 -0.046 0.266 C19 VBY 10 VBY C20 C11 C 0 1 Y N N 50.778 27.227 -2.729 5.980 -0.675 -1.093 C20 VBY 11 VBY C21 C12 C 0 1 Y N N 49.328 35.788 0.654 -4.384 -1.109 -0.024 C21 VBY 12 VBY C22 C13 C 0 1 Y N N 51.985 27.054 -3.435 6.627 0.555 -1.203 C22 VBY 13 VBY C24 C14 C 0 1 N N N 51.419 37.133 -0.875 -5.125 1.662 -0.195 C24 VBY 14 VBY C25 C15 C 0 1 N N N 52.576 37.946 -1.378 -5.751 2.950 0.138 C25 VBY 15 VBY C27 C16 C 0 1 N N N 53.850 37.762 -1.025 -6.797 3.382 -0.561 C27 VBY 16 VBY C3 C17 C 0 1 Y N N 49.658 33.023 0.459 -1.642 -1.520 0.080 C3 VBY 17 VBY C4 C18 C 0 1 Y N N 53.161 29.755 0.749 2.203 1.492 0.887 C4 VBY 18 VBY C5 C19 C 0 1 Y N N 51.936 29.247 0.328 2.800 0.345 0.461 C5 VBY 19 VBY C6 C20 C 0 1 N N R 50.723 29.503 1.161 2.085 -0.975 0.593 C6 VBY 20 VBY C8 C21 C 0 1 Y N N 51.882 28.472 -0.972 4.085 0.398 -0.102 C8 VBY 21 VBY C9 C22 C 0 1 Y N N 54.346 29.561 0.009 2.848 2.721 0.773 C9 VBY 22 VBY N2 N1 N 0 1 N N N 50.594 30.929 1.234 0.637 -0.754 0.541 N2 VBY 23 VBY O7 O1 O 0 1 N N N 49.036 30.949 -0.422 0.280 -2.820 -0.189 O7 VBY 24 VBY N01 N2 N 0 1 N N N 51.612 36.063 -0.082 -4.065 1.224 0.513 N01 VBY 25 VBY O26 O2 O 0 1 N N N 50.318 37.549 -1.222 -5.564 0.991 -1.110 O26 VBY 26 VBY C01 C23 C 0 1 N N N 50.755 28.849 2.533 2.454 -1.624 1.929 C01 VBY 27 VBY H1 H1 H 0 1 N N N 55.282 28.702 -1.734 4.582 3.771 0.150 H1 VBY 28 VBY H2 H2 H 0 1 N N N 51.681 33.442 -0.064 -1.504 0.573 0.553 H2 VBY 29 VBY H3 H3 H 0 1 N N N 49.776 28.049 -0.993 4.246 -1.725 -0.470 H3 VBY 30 VBY H4 H4 H 0 1 N N N 47.187 32.396 2.190 -1.625 -4.024 -1.517 H4 VBY 31 VBY H5 H5 H 0 1 N N N 46.253 33.150 0.854 -1.089 -4.128 0.177 H5 VBY 32 VBY H6 H6 H 0 1 N N N 47.308 31.734 0.524 -2.711 -4.701 -0.280 H6 VBY 33 VBY H7 H7 H 0 1 N N N 47.276 35.410 1.158 -4.530 -3.189 -0.489 H7 VBY 34 VBY H8 H8 H 0 1 N N N 54.102 27.457 -3.483 6.545 2.647 -0.868 H8 VBY 35 VBY H9 H9 H 0 1 N N N 49.870 26.807 -3.136 6.476 -1.570 -1.439 H9 VBY 36 VBY H10 H10 H 0 1 N N N 49.210 36.860 0.714 -5.451 -0.950 -0.063 H10 VBY 37 VBY H11 H11 H 0 1 N N N 51.988 26.507 -4.366 7.617 0.598 -1.632 H11 VBY 38 VBY H12 H12 H 0 1 N N N 52.362 38.740 -2.078 -5.361 3.546 0.950 H12 VBY 39 VBY H13 H13 H 0 1 N N N 54.621 38.396 -1.437 -7.257 4.328 -0.316 H13 VBY 40 VBY H14 H14 H 0 1 N N N 54.109 36.980 -0.327 -7.187 2.786 -1.372 H14 VBY 41 VBY H15 H15 H 0 1 N N N 53.206 30.315 1.671 1.214 1.448 1.320 H15 VBY 42 VBY H16 H16 H 0 1 N N N 49.853 29.099 0.622 2.381 -1.632 -0.224 H16 VBY 43 VBY H17 H17 H 0 1 N N N 55.272 29.977 0.378 2.353 3.616 1.119 H17 VBY 44 VBY H18 H18 H 0 1 N N N 51.120 31.454 1.903 0.268 0.105 0.802 H18 VBY 45 VBY H19 H19 H 0 1 N N N 52.541 35.847 0.220 -3.669 1.791 1.194 H19 VBY 46 VBY H20 H20 H 0 1 N N N 49.828 29.088 3.075 3.531 -1.789 1.967 H20 VBY 47 VBY H21 H21 H 0 1 N N N 50.841 27.758 2.417 2.157 -0.967 2.746 H21 VBY 48 VBY H22 H22 H 0 1 N N N 51.619 29.227 3.099 1.937 -2.579 2.024 H22 VBY 49 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VBY C22 C18 DOUB Y N 1 VBY C22 C20 SING Y N 2 VBY C18 C11 SING Y N 3 VBY C20 C14 DOUB Y N 4 VBY C11 C12 DOUB Y N 5 VBY C11 C8 SING Y N 6 VBY C14 C8 SING Y N 7 VBY C25 C27 DOUB N N 8 VBY C25 C24 SING N N 9 VBY O26 C24 DOUB N N 10 VBY C12 C9 SING Y N 11 VBY C8 C5 DOUB Y N 12 VBY C24 N01 SING N N 13 VBY O7 C1 DOUB N N 14 VBY N01 C19 SING N N 15 VBY C9 C4 DOUB Y N 16 VBY C13 C19 DOUB Y N 17 VBY C13 C3 SING Y N 18 VBY C19 C21 SING Y N 19 VBY C5 C4 SING Y N 20 VBY C5 C6 SING N N 21 VBY C1 C3 SING N N 22 VBY C1 N2 SING N N 23 VBY C3 C10 DOUB Y N 24 VBY C21 C17 DOUB Y N 25 VBY C10 C17 SING Y N 26 VBY C10 C16 SING N N 27 VBY C6 N2 SING N N 28 VBY C6 C01 SING N N 29 VBY C12 H1 SING N N 30 VBY C13 H2 SING N N 31 VBY C14 H3 SING N N 32 VBY C16 H4 SING N N 33 VBY C16 H5 SING N N 34 VBY C16 H6 SING N N 35 VBY C17 H7 SING N N 36 VBY C18 H8 SING N N 37 VBY C20 H9 SING N N 38 VBY C21 H10 SING N N 39 VBY C22 H11 SING N N 40 VBY C25 H12 SING N N 41 VBY C27 H13 SING N N 42 VBY C27 H14 SING N N 43 VBY C4 H15 SING N N 44 VBY C6 H16 SING N N 45 VBY C9 H17 SING N N 46 VBY N2 H18 SING N N 47 VBY N01 H19 SING N N 48 VBY C01 H20 SING N N 49 VBY C01 H21 SING N N 50 VBY C01 H22 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VBY SMILES ACDLabs 12.01 "C(c1c(ccc(c1)NC(\C=C)=O)C)(NC(c3cccc2c3cccc2)C)=O" VBY InChI InChI 1.03 "InChI=1S/C23H22N2O2/c1-4-22(26)25-18-13-12-15(2)21(14-18)23(27)24-16(3)19-11-7-9-17-8-5-6-10-20(17)19/h4-14,16H,1H2,2-3H3,(H,24,27)(H,25,26)/t16-/m1/s1" VBY InChIKey InChI 1.03 QMJFETCLZITVFG-MRXNPFEDSA-N VBY SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC(=O)c1cc(NC(=O)C=C)ccc1C)c2cccc3ccccc23" VBY SMILES CACTVS 3.385 "C[CH](NC(=O)c1cc(NC(=O)C=C)ccc1C)c2cccc3ccccc23" VBY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)N[C@H](C)c2cccc3c2cccc3)NC(=O)C=C" VBY SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1C(=O)NC(C)c2cccc3c2cccc3)NC(=O)C=C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VBY "SYSTEMATIC NAME" ACDLabs 12.01 "5-(acryloylamino)-2-methyl-N-[(1R)-1-(naphthalen-1-yl)ethyl]benzamide" VBY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-methyl-~{N}-[(1~{R})-1-naphthalen-1-ylethyl]-5-(prop-2-enoylamino)benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VBY "Create component" 2020-07-24 RCSB VBY "Initial release" 2020-08-05 RCSB ##