data_VCD # _chem_comp.id VCD _chem_comp.name "4-{4-[(3R)-3-methylmorpholin-4-yl]-6-[1-(methylsulfonyl)cyclopropyl]pyrimidin-2-yl}-1H-indole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 N4 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-27 _chem_comp.pdbx_modified_date 2021-07-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.505 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VCD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7JJG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VCD C11 C1 C 0 1 N N N 15.352 19.094 64.352 -2.779 -4.448 0.414 C11 VCD 1 VCD C01 C2 C 0 1 Y N N 19.099 17.359 65.766 0.600 -1.870 -0.269 C01 VCD 2 VCD C02 C3 C 0 1 Y N N 20.327 16.881 66.223 1.579 -0.903 -0.141 C02 VCD 3 VCD C04 C4 C 0 1 Y N N 21.027 19.130 66.639 -0.052 0.727 -0.103 C04 VCD 4 VCD C06 C5 C 0 1 Y N N 18.850 18.750 65.739 -0.736 -1.465 -0.317 C06 VCD 5 VCD C08 C6 C 0 1 N N R 17.315 20.680 65.781 -3.068 -1.750 -0.465 C08 VCD 6 VCD C09 C7 C 0 1 N N N 16.211 21.270 64.864 -4.152 -2.811 -0.668 C09 VCD 7 VCD C12 C8 C 0 1 N N N 16.533 18.414 65.086 -1.681 -3.403 0.627 C12 VCD 8 VCD C13 C9 C 0 1 N N N 16.869 20.707 67.274 -3.302 -1.028 0.864 C13 VCD 9 VCD C14 C10 C 0 1 Y N N 21.993 20.032 67.140 -0.404 2.162 -0.010 C14 VCD 10 VCD C15 C11 C 0 1 Y N N 22.866 19.580 68.165 0.592 3.122 0.119 C15 VCD 11 VCD C16 C12 C 0 1 Y N N 23.828 20.436 68.731 0.261 4.463 0.206 C16 VCD 12 VCD C17 C13 C 0 1 Y N N 23.952 21.768 68.309 -1.057 4.870 0.165 C17 VCD 13 VCD C18 C14 C 0 1 Y N N 23.082 22.231 67.315 -2.075 3.932 0.036 C18 VCD 14 VCD C19 C15 C 0 1 Y N N 22.118 21.390 66.739 -1.751 2.567 -0.058 C19 VCD 15 VCD C20 C16 C 0 1 Y N N 21.448 22.174 65.795 -3.021 1.856 -0.190 C20 VCD 16 VCD C21 C17 C 0 1 Y N N 22.024 23.445 65.844 -3.994 2.783 -0.175 C21 VCD 17 VCD C23 C18 C 0 1 N N N 20.621 15.445 66.248 3.034 -1.293 -0.093 C23 VCD 18 VCD C25 C19 C 0 1 N N N 23.416 15.610 66.944 3.850 0.841 1.556 C25 VCD 19 VCD C28 C20 C 0 1 N N N 19.520 14.397 66.051 3.400 -2.559 0.684 C28 VCD 20 VCD C29 C21 C 0 1 N N N 20.566 14.631 64.955 3.451 -2.558 -0.845 C29 VCD 21 VCD N03 N1 N 0 1 Y N N 21.235 17.787 66.655 1.225 0.370 -0.061 N03 VCD 22 VCD N05 N2 N 0 1 Y N N 19.820 19.576 66.209 -1.020 -0.170 -0.237 N05 VCD 23 VCD N07 N3 N 0 1 N N N 17.651 19.320 65.327 -1.750 -2.401 -0.445 N07 VCD 24 VCD N22 N4 N 0 1 Y N N 23.010 23.450 66.757 -3.448 4.028 -0.032 N22 VCD 25 VCD O10 O1 O 0 1 N N N 15.076 20.401 64.870 -4.050 -3.794 0.366 O10 VCD 26 VCD O26 O2 O 0 1 N N N 21.466 15.653 68.840 5.530 -0.448 -0.016 O26 VCD 27 VCD O27 O3 O 0 1 N N N 21.840 13.383 67.510 3.866 1.008 -1.075 O27 VCD 28 VCD S24 S1 S 0 1 N N N 21.826 14.944 67.506 4.213 0.084 -0.052 S24 VCD 29 VCD H111 H1 H 0 0 N N N 14.454 18.469 64.469 -2.604 -4.973 -0.525 H111 VCD 30 VCD H112 H2 H 0 0 N N N 15.601 19.181 63.284 -2.768 -5.162 1.238 H112 VCD 31 VCD H011 H3 H 0 0 N N N 18.339 16.667 65.433 0.863 -2.916 -0.336 H011 VCD 32 VCD H081 H4 H 0 0 N N N 18.207 21.316 65.686 -3.106 -1.029 -1.282 H081 VCD 33 VCD H091 H5 H 0 0 N N N 16.597 21.363 63.838 -5.135 -2.340 -0.627 H091 VCD 34 VCD H092 H6 H 0 0 N N N 15.916 22.262 65.236 -4.018 -3.288 -1.639 H092 VCD 35 VCD H121 H7 H 0 0 N N N 16.173 18.036 66.054 -1.825 -2.916 1.592 H121 VCD 36 VCD H122 H8 H 0 0 N N N 16.889 17.573 64.473 -0.706 -3.891 0.608 H122 VCD 37 VCD H133 H9 H 0 0 N N N 17.666 20.285 67.903 -3.263 -1.749 1.680 H133 VCD 38 VCD H131 H10 H 0 0 N N N 16.673 21.745 67.579 -2.528 -0.273 1.008 H131 VCD 39 VCD H132 H11 H 0 0 N N N 15.953 20.110 67.394 -4.280 -0.547 0.849 H132 VCD 40 VCD H151 H12 H 0 0 N N N 22.790 18.561 68.516 1.629 2.821 0.152 H151 VCD 41 VCD H161 H13 H 0 0 N N N 24.483 20.061 69.504 1.043 5.201 0.306 H161 VCD 42 VCD H171 H14 H 0 0 N N N 24.699 22.419 68.739 -1.298 5.920 0.234 H171 VCD 43 VCD H201 H15 H 0 0 N N N 20.640 21.857 65.152 -3.153 0.789 -0.290 H201 VCD 44 VCD H211 H16 H 0 0 N N N 21.724 24.291 65.243 -5.051 2.575 -0.254 H211 VCD 45 VCD H252 H17 H 0 0 N N N 24.202 15.342 67.666 4.102 0.140 2.352 H252 VCD 46 VCD H253 H18 H 0 0 N N N 23.663 15.187 65.959 4.441 1.750 1.672 H253 VCD 47 VCD H251 H19 H 0 0 N N N 23.348 16.705 66.866 2.790 1.087 1.611 H251 VCD 48 VCD H281 H20 H 0 0 N N N 18.479 14.715 65.895 4.350 -2.565 1.220 H281 VCD 49 VCD H282 H21 H 0 0 N N N 19.535 13.466 66.637 2.589 -3.110 1.161 H282 VCD 50 VCD H291 H22 H 0 0 N N N 21.331 13.867 64.753 2.673 -3.108 -1.375 H291 VCD 51 VCD H292 H23 H 0 0 N N N 20.275 15.116 64.012 4.434 -2.563 -1.316 H292 VCD 52 VCD H221 H24 H 0 0 N N N 23.592 24.231 66.983 -3.951 4.857 0.006 H221 VCD 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VCD C11 O10 SING N N 1 VCD C11 C12 SING N N 2 VCD C09 O10 SING N N 3 VCD C09 C08 SING N N 4 VCD C29 C28 SING N N 5 VCD C29 C23 SING N N 6 VCD C12 N07 SING N N 7 VCD N07 C06 SING N N 8 VCD N07 C08 SING N N 9 VCD C06 C01 DOUB Y N 10 VCD C06 N05 SING Y N 11 VCD C01 C02 SING Y N 12 VCD C08 C13 SING N N 13 VCD C20 C21 DOUB Y N 14 VCD C20 C19 SING Y N 15 VCD C21 N22 SING Y N 16 VCD C28 C23 SING N N 17 VCD N05 C04 DOUB Y N 18 VCD C02 C23 SING N N 19 VCD C02 N03 DOUB Y N 20 VCD C23 S24 SING N N 21 VCD C04 N03 SING Y N 22 VCD C04 C14 SING N N 23 VCD C19 C14 DOUB Y N 24 VCD C19 C18 SING Y N 25 VCD N22 C18 SING Y N 26 VCD C25 S24 SING N N 27 VCD C14 C15 SING Y N 28 VCD C18 C17 DOUB Y N 29 VCD S24 O27 DOUB N N 30 VCD S24 O26 DOUB N N 31 VCD C15 C16 DOUB Y N 32 VCD C17 C16 SING Y N 33 VCD C11 H111 SING N N 34 VCD C11 H112 SING N N 35 VCD C01 H011 SING N N 36 VCD C08 H081 SING N N 37 VCD C09 H091 SING N N 38 VCD C09 H092 SING N N 39 VCD C12 H121 SING N N 40 VCD C12 H122 SING N N 41 VCD C13 H133 SING N N 42 VCD C13 H131 SING N N 43 VCD C13 H132 SING N N 44 VCD C15 H151 SING N N 45 VCD C16 H161 SING N N 46 VCD C17 H171 SING N N 47 VCD C20 H201 SING N N 48 VCD C21 H211 SING N N 49 VCD C25 H252 SING N N 50 VCD C25 H253 SING N N 51 VCD C25 H251 SING N N 52 VCD C28 H281 SING N N 53 VCD C28 H282 SING N N 54 VCD C29 H291 SING N N 55 VCD C29 H292 SING N N 56 VCD N22 H221 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VCD SMILES ACDLabs 12.01 "C5OCC(C)N(c4cc(C1(S(C)(=O)=O)CC1)nc(c2cccc3c2ccn3)n4)C5" VCD InChI InChI 1.03 "InChI=1S/C21H24N4O3S/c1-14-13-28-11-10-25(14)19-12-18(21(7-8-21)29(2,26)27)23-20(24-19)16-4-3-5-17-15(16)6-9-22-17/h3-6,9,12,14,22H,7-8,10-11,13H2,1-2H3/t14-/m1/s1" VCD InChIKey InChI 1.03 SCGCBAAYLFTIJU-CQSZACIVSA-N VCD SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1COCCN1c2cc(nc(n2)c3cccc4[nH]ccc34)C5(CC5)[S](C)(=O)=O" VCD SMILES CACTVS 3.385 "C[CH]1COCCN1c2cc(nc(n2)c3cccc4[nH]ccc34)C5(CC5)[S](C)(=O)=O" VCD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1COCCN1c2cc(nc(n2)c3cccc4c3cc[nH]4)C5(CC5)S(=O)(=O)C" VCD SMILES "OpenEye OEToolkits" 2.0.7 "CC1COCCN1c2cc(nc(n2)c3cccc4c3cc[nH]4)C5(CC5)S(=O)(=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VCD "SYSTEMATIC NAME" ACDLabs 12.01 "4-{4-[(3R)-3-methylmorpholin-4-yl]-6-[1-(methylsulfonyl)cyclopropyl]pyrimidin-2-yl}-1H-indole" VCD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-4-[2-(1~{H}-indol-4-yl)-6-(1-methylsulfonylcyclopropyl)pyrimidin-4-yl]-3-methyl-morpholine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VCD "Create component" 2020-07-27 RCSB VCD "Initial release" 2021-07-28 RCSB ##