data_VCG
#
_chem_comp.id VCG
_chem_comp.name "2-hydroxyethyl 2-deoxy-3,5-bis-O-(2-hydroxyethyl)-6-O-(2-{[(9E)-octadec-9-enoyl]oxy}ethyl)-alpha-L-xylo-hexofuranoside"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C32 H60 O10"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Polysorbate 80"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-07-28
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 604.813
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VCG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7JJI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VCG C16 C1 C 0 1 N N N 175.375 197.342 191.707 2.000 -2.491 0.359 C16 VCG 1
VCG C15 C2 C 0 1 N N N 176.087 196.700 190.523 2.944 -2.062 1.484 C15 VCG 2
VCG C14 C3 C 0 1 N N N 177.558 196.437 190.815 4.390 -2.125 0.989 C14 VCG 3
VCG C13 C4 C 0 1 N N N 178.457 197.059 189.756 5.333 -1.695 2.115 C13 VCG 4
VCG C12 C5 C 0 1 N N N 179.770 196.305 189.605 6.780 -1.759 1.620 C12 VCG 5
VCG C11 C6 C 0 1 N N N 180.803 196.737 190.638 7.723 -1.329 2.745 C11 VCG 6
VCG C10 C7 C 0 1 N N N 182.228 196.562 190.125 9.148 -1.392 2.258 C10 VCG 7
VCG C09 C8 C 0 1 N N N 182.452 195.873 189.026 9.915 -0.334 2.342 C09 VCG 8
VCG C08 C9 C 0 1 N N N 183.877 195.698 188.513 11.340 -0.396 1.854 C08 VCG 9
VCG C07 C10 C 0 1 N N N 184.220 194.240 188.215 11.578 0.715 0.830 C07 VCG 10
VCG C06 C11 C 0 1 N N N 185.492 194.108 187.380 13.024 0.652 0.335 C06 VCG 11
VCG C05 C12 C 0 1 N N N 185.511 195.058 186.186 13.262 1.763 -0.690 C05 VCG 12
VCG C04 C13 C 0 1 N N N 186.765 194.906 185.332 14.708 1.700 -1.184 C04 VCG 13
VCG C03 C14 C 0 1 N N N 187.968 195.608 185.952 14.946 2.811 -2.209 C03 VCG 14
VCG C02 C15 C 0 1 N N N 188.710 196.483 184.944 16.392 2.747 -2.704 C02 VCG 15
VCG C01 C16 C 0 1 N N N 190.204 196.589 185.238 16.630 3.859 -3.728 C01 VCG 16
VCG C17 C17 C 0 1 N N N 174.103 196.596 192.093 0.554 -2.428 0.853 C17 VCG 17
VCG C18 C18 C 0 1 N N N 174.306 195.087 192.126 -0.375 -2.851 -0.255 C18 VCG 18
VCG O20 O1 O 0 1 N N N 175.595 194.565 192.227 -1.701 -2.872 -0.048 O20 VCG 19
VCG C21 C19 C 0 1 N N N 175.772 193.687 193.301 -2.536 -3.290 -1.160 C21 VCG 20
VCG C22 C20 C 0 1 N N N 175.063 192.377 192.978 -4.006 -3.252 -0.738 C22 VCG 21
VCG O23 O2 O 0 1 N N N 175.311 192.053 191.642 -4.388 -1.903 -0.465 O23 VCG 22
VCG C24 C21 C 0 1 N N N 176.664 192.079 191.293 -5.750 -1.755 -0.059 C24 VCG 23
VCG C25 C22 C 0 1 N N S 177.185 190.647 191.271 -6.046 -0.277 0.205 C25 VCG 24
VCG C26 C23 C 0 1 N N S 178.678 190.517 190.986 -7.534 -0.103 0.517 C26 VCG 25
VCG C27 C24 C 0 1 N N R 179.618 191.510 191.877 -8.391 -0.505 -0.704 C27 VCG 26
VCG C28 C25 C 0 1 N N N 180.696 191.706 191.195 -9.556 0.510 -0.696 C28 VCG 27
VCG C29 C26 C 0 1 N N R 180.498 190.938 189.849 -9.265 1.405 0.530 C29 VCG 28
VCG O30 O3 O 0 1 N N N 178.981 190.777 189.749 -7.841 1.290 0.741 O30 VCG 29
VCG O31 O4 O 0 1 N N N 180.995 191.682 188.779 -9.622 2.760 0.251 O31 VCG 30
VCG C32 C27 C 0 1 N N N 182.324 191.402 188.449 -9.491 3.638 1.371 C32 VCG 31
VCG C33 C28 C 0 1 N N N 182.460 189.905 188.185 -9.897 5.054 0.960 C33 VCG 32
VCG O34 O5 O 0 1 N N N 181.425 189.494 187.338 -11.286 5.073 0.626 O34 VCG 33
VCG O35 O6 O 0 1 N N N 178.992 192.729 192.133 -7.632 -0.386 -1.909 O35 VCG 34
VCG C36 C29 C 0 1 N N N 179.697 193.557 193.010 -8.094 -1.222 -2.972 C36 VCG 35
VCG C37 C30 C 0 1 N N N 180.109 192.750 194.239 -7.293 -0.923 -4.241 C37 VCG 36
VCG O38 O7 O 0 1 N N N 181.341 192.138 193.981 -5.928 -1.296 -4.042 O38 VCG 37
VCG O39 O8 O 0 1 N N N 176.951 190.081 192.527 -5.270 0.173 1.317 O39 VCG 38
VCG C40 C31 C 0 1 N N N 175.686 189.506 192.680 -4.823 1.525 1.205 C40 VCG 39
VCG C41 C32 C 0 1 N N N 175.297 189.619 194.151 -3.903 1.858 2.381 C41 VCG 40
VCG O42 O9 O 0 1 N N N 173.914 189.439 194.254 -2.716 1.067 2.296 O42 VCG 41
VCG O19 O10 O 0 1 N N N 173.374 194.361 192.062 0.073 -3.170 -1.331 O19 VCG 42
VCG H1 H1 H 0 1 N N N 176.058 197.347 192.570 2.123 -1.822 -0.493 H1 VCG 43
VCG H2 H2 H 0 1 N N N 175.111 198.377 191.442 2.236 -3.511 0.056 H2 VCG 44
VCG H3 H3 H 0 1 N N N 176.012 197.373 189.656 2.707 -1.041 1.787 H3 VCG 45
VCG H4 H4 H 0 1 N N N 175.595 195.744 190.289 2.821 -2.731 2.336 H4 VCG 46
VCG H5 H5 H 0 1 N N N 177.729 195.351 190.836 4.626 -3.145 0.687 H5 VCG 47
VCG H6 H6 H 0 1 N N N 177.810 196.867 191.795 4.512 -1.456 0.138 H6 VCG 48
VCG H7 H7 H 0 1 N N N 178.676 198.098 190.042 5.097 -0.675 2.417 H7 VCG 49
VCG H8 H8 H 0 1 N N N 177.929 197.048 188.791 5.211 -2.365 2.966 H8 VCG 50
VCG H9 H9 H 0 1 N N N 179.577 195.229 189.726 7.016 -2.779 1.317 H9 VCG 51
VCG H10 H10 H 0 1 N N N 180.174 196.494 188.599 6.902 -1.090 0.768 H10 VCG 52
VCG H11 H11 H 0 1 N N N 180.640 197.797 190.882 7.487 -0.309 3.048 H11 VCG 53
VCG H12 H12 H 0 1 N N N 180.674 196.129 191.545 7.601 -1.998 3.597 H12 VCG 54
VCG H13 H13 H 0 1 N N N 183.054 197.003 190.663 9.536 -2.309 1.840 H13 VCG 55
VCG H14 H14 H 0 1 N N N 181.626 195.432 188.488 9.528 0.583 2.760 H14 VCG 56
VCG H15 H15 H 0 1 N N N 184.575 196.075 189.275 12.019 -0.264 2.697 H15 VCG 57
VCG H16 H16 H 0 1 N N N 183.993 196.283 187.589 11.523 -1.365 1.389 H16 VCG 58
VCG H17 H17 H 0 1 N N N 183.385 193.785 187.663 10.899 0.583 -0.013 H17 VCG 59
VCG H18 H18 H 0 1 N N N 184.364 193.708 189.167 11.395 1.684 1.295 H18 VCG 60
VCG H19 H19 H 0 1 N N N 185.565 193.075 187.009 13.703 0.784 1.178 H19 VCG 61
VCG H20 H20 H 0 1 N N N 186.358 194.330 188.020 13.207 -0.317 -0.131 H20 VCG 62
VCG H21 H21 H 0 1 N N N 185.462 196.092 186.558 12.583 1.631 -1.533 H21 VCG 63
VCG H22 H22 H 0 1 N N N 184.631 194.852 185.559 13.079 2.731 -0.224 H22 VCG 64
VCG H23 H23 H 0 1 N N N 186.573 195.340 184.340 15.387 1.831 -0.342 H23 VCG 65
VCG H24 H24 H 0 1 N N N 186.995 193.835 185.226 14.891 0.731 -1.650 H24 VCG 66
VCG H25 H25 H 0 1 N N N 188.662 194.847 186.338 14.267 2.679 -3.052 H25 VCG 67
VCG H26 H26 H 0 1 N N N 187.620 196.241 186.781 14.763 3.779 -1.743 H26 VCG 68
VCG H27 H27 H 0 1 N N N 188.275 197.493 184.968 17.071 2.879 -1.861 H27 VCG 69
VCG H28 H28 H 0 1 N N N 188.579 196.051 183.941 16.575 1.779 -3.169 H28 VCG 70
VCG H29 H29 H 0 1 N N N 190.683 197.229 184.482 17.660 3.813 -4.081 H29 VCG 71
VCG H30 H30 H 0 1 N N N 190.351 197.028 186.236 15.952 3.727 -4.571 H30 VCG 72
VCG H31 H31 H 0 1 N N N 190.655 195.586 185.208 16.448 4.827 -3.263 H31 VCG 73
VCG H32 H32 H 0 1 N N N 173.785 196.932 193.091 0.432 -3.097 1.705 H32 VCG 74
VCG H33 H33 H 0 1 N N N 173.318 196.831 191.359 0.318 -1.407 1.156 H33 VCG 75
VCG H34 H34 H 0 1 N N N 176.845 193.500 193.454 -2.382 -2.616 -2.003 H34 VCG 76
VCG H35 H35 H 0 1 N N N 175.342 194.126 194.214 -2.268 -4.306 -1.454 H35 VCG 77
VCG H36 H36 H 0 1 N N N 173.981 192.493 193.136 -4.625 -3.650 -1.542 H36 VCG 78
VCG H37 H37 H 0 1 N N N 175.446 191.578 193.630 -4.142 -3.857 0.159 H37 VCG 79
VCG H38 H38 H 0 1 N N N 177.227 192.667 192.033 -6.406 -2.121 -0.849 H38 VCG 80
VCG H39 H39 H 0 1 N N N 176.782 192.532 190.298 -5.923 -2.328 0.851 H39 VCG 81
VCG H40 H40 H 0 1 N N N 176.635 190.090 190.498 -5.790 0.308 -0.678 H40 VCG 82
VCG H41 H41 H 0 1 N N N 178.976 189.492 191.250 -7.810 -0.699 1.387 H41 VCG 83
VCG H42 H42 H 0 1 N N N 179.827 190.990 192.823 -8.766 -1.522 -0.589 H42 VCG 84
VCG H43 H43 H 0 1 N N N 181.568 191.311 191.736 -9.553 1.102 -1.610 H43 VCG 85
VCG H44 H44 H 0 1 N N N 180.838 192.780 191.005 -10.509 -0.005 -0.578 H44 VCG 86
VCG H45 H45 H 0 1 N N N 180.975 189.949 189.918 -9.809 1.042 1.402 H45 VCG 87
VCG H46 H46 H 0 1 N N N 182.981 191.692 189.282 -10.137 3.294 2.179 H46 VCG 88
VCG H47 H47 H 0 1 N N N 182.607 191.964 187.547 -8.455 3.641 1.711 H47 VCG 89
VCG H48 H48 H 0 1 N N N 182.398 189.356 189.136 -9.713 5.740 1.787 H48 VCG 90
VCG H49 H49 H 0 1 N N N 183.430 189.702 187.707 -9.311 5.363 0.094 H49 VCG 91
VCG H50 H50 H 0 1 N N N 181.504 188.562 187.170 -11.613 5.942 0.355 H50 VCG 92
VCG H51 H51 H 0 1 N N N 180.595 193.946 192.507 -7.960 -2.268 -2.696 H51 VCG 93
VCG H52 H52 H 0 1 N N N 179.057 194.396 193.319 -9.151 -1.027 -3.154 H52 VCG 94
VCG H53 H53 H 0 1 N N N 180.203 193.419 195.107 -7.707 -1.491 -5.074 H53 VCG 95
VCG H54 H54 H 0 1 N N N 179.350 191.981 194.449 -7.350 0.142 -4.463 H54 VCG 96
VCG H55 H55 H 0 1 N N N 181.609 191.632 194.739 -5.346 -1.064 -4.778 H55 VCG 97
VCG H56 H56 H 0 1 N N N 174.954 190.041 192.057 -4.277 1.651 0.270 H56 VCG 98
VCG H57 H57 H 0 1 N N N 175.717 188.448 192.382 -5.684 2.194 1.216 H57 VCG 99
VCG H58 H58 H 0 1 N N N 175.817 188.845 194.734 -3.639 2.915 2.348 H58 VCG 100
VCG H59 H59 H 0 1 N N N 175.572 190.613 194.533 -4.418 1.641 3.318 H59 VCG 101
VCG H60 H60 H 0 1 N N N 173.652 189.506 195.165 -2.086 1.225 3.012 H60 VCG 102
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VCG C02 C01 SING N N 1
VCG C02 C03 SING N N 2
VCG C04 C03 SING N N 3
VCG C04 C05 SING N N 4
VCG C05 C06 SING N N 5
VCG O34 C33 SING N N 6
VCG C06 C07 SING N N 7
VCG C33 C32 SING N N 8
VCG C07 C08 SING N N 9
VCG C32 O31 SING N N 10
VCG C08 C09 SING N N 11
VCG O31 C29 SING N N 12
VCG C09 C10 DOUB N E 13
VCG C12 C13 SING N N 14
VCG C12 C11 SING N N 15
VCG O30 C29 SING N N 16
VCG O30 C26 SING N N 17
VCG C13 C14 SING N N 18
VCG C29 C28 SING N N 19
VCG C10 C11 SING N N 20
VCG C15 C14 SING N N 21
VCG C15 C16 SING N N 22
VCG C26 C25 SING N N 23
VCG C26 C27 SING N N 24
VCG C28 C27 SING N N 25
VCG C25 C24 SING N N 26
VCG C25 O39 SING N N 27
VCG C24 O23 SING N N 28
VCG O23 C22 SING N N 29
VCG C16 C17 SING N N 30
VCG C27 O35 SING N N 31
VCG O19 C18 DOUB N N 32
VCG C17 C18 SING N N 33
VCG C18 O20 SING N N 34
VCG O35 C36 SING N N 35
VCG O20 C21 SING N N 36
VCG O39 C40 SING N N 37
VCG C40 C41 SING N N 38
VCG C22 C21 SING N N 39
VCG C36 C37 SING N N 40
VCG O38 C37 SING N N 41
VCG C41 O42 SING N N 42
VCG C16 H1 SING N N 43
VCG C16 H2 SING N N 44
VCG C15 H3 SING N N 45
VCG C15 H4 SING N N 46
VCG C14 H5 SING N N 47
VCG C14 H6 SING N N 48
VCG C13 H7 SING N N 49
VCG C13 H8 SING N N 50
VCG C12 H9 SING N N 51
VCG C12 H10 SING N N 52
VCG C11 H11 SING N N 53
VCG C11 H12 SING N N 54
VCG C10 H13 SING N N 55
VCG C09 H14 SING N N 56
VCG C08 H15 SING N N 57
VCG C08 H16 SING N N 58
VCG C07 H17 SING N N 59
VCG C07 H18 SING N N 60
VCG C06 H19 SING N N 61
VCG C06 H20 SING N N 62
VCG C05 H21 SING N N 63
VCG C05 H22 SING N N 64
VCG C04 H23 SING N N 65
VCG C04 H24 SING N N 66
VCG C03 H25 SING N N 67
VCG C03 H26 SING N N 68
VCG C02 H27 SING N N 69
VCG C02 H28 SING N N 70
VCG C01 H29 SING N N 71
VCG C01 H30 SING N N 72
VCG C01 H31 SING N N 73
VCG C17 H32 SING N N 74
VCG C17 H33 SING N N 75
VCG C21 H34 SING N N 76
VCG C21 H35 SING N N 77
VCG C22 H36 SING N N 78
VCG C22 H37 SING N N 79
VCG C24 H38 SING N N 80
VCG C24 H39 SING N N 81
VCG C25 H40 SING N N 82
VCG C26 H41 SING N N 83
VCG C27 H42 SING N N 84
VCG C28 H43 SING N N 85
VCG C28 H44 SING N N 86
VCG C29 H45 SING N N 87
VCG C32 H46 SING N N 88
VCG C32 H47 SING N N 89
VCG C33 H48 SING N N 90
VCG C33 H49 SING N N 91
VCG O34 H50 SING N N 92
VCG C36 H51 SING N N 93
VCG C36 H52 SING N N 94
VCG C37 H53 SING N N 95
VCG C37 H54 SING N N 96
VCG O38 H55 SING N N 97
VCG C40 H56 SING N N 98
VCG C40 H57 SING N N 99
VCG C41 H58 SING N N 100
VCG C41 H59 SING N N 101
VCG O42 H60 SING N N 102
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VCG SMILES ACDLabs 12.01 "C(CC(OCCOCC(OCCO)C1C(OCCO)CC(O1)OCCO)=O)CCCCC[C@H]=[C@H]CCCCCCCC"
VCG InChI InChI 1.03 "InChI=1S/C32H60O10/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-30(36)40-25-24-37-27-29(39-22-19-34)32-28(38-21-18-33)26-31(42-32)41-23-20-35/h9-10,28-29,31-35H,2-8,11-27H2,1H3/b10-9+/t28-,29+,31-,32+/m1/s1"
VCG InChIKey InChI 1.03 RGPBUVUVZKQNHD-YPJAPDKZSA-N
VCG SMILES_CANONICAL CACTVS 3.385 "CCCCCCCC\C=C\CCCCCCCC(=O)OCCOC[C@H](OCCO)[C@H]1O[C@H](C[C@H]1OCCO)OCCO"
VCG SMILES CACTVS 3.385 "CCCCCCCCC=CCCCCCCCC(=O)OCCOC[CH](OCCO)[CH]1O[CH](C[CH]1OCCO)OCCO"
VCG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCC/C=C/CCCCCCCC(=O)OCCOC[C@@H]([C@@H]1[C@@H](C[C@@H](O1)OCCO)OCCO)OCCO"
VCG SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCC=CCCCCCCCC(=O)OCCOCC(C1C(CC(O1)OCCO)OCCO)OCCO"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VCG "SYSTEMATIC NAME" ACDLabs 12.01 "2-hydroxyethyl 2-deoxy-3,5-bis-O-(2-hydroxyethyl)-6-O-(2-{[(9E)-octadec-9-enoyl]oxy}ethyl)-alpha-L-xylo-hexofuranoside"
VCG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(2~{S})-2-[(2~{S},3~{R},5~{R})-3,5-bis(2-hydroxyethyloxy)oxolan-2-yl]-2-(2-hydroxyethyloxy)ethoxy]ethyl (~{E})-octadec-9-enoate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VCG "Create component" 2020-07-28 RCSB
VCG "Initial release" 2020-08-26 RCSB
VCG "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id VCG
_pdbx_chem_comp_synonyms.name "Polysorbate 80"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##