data_VCP # _chem_comp.id VCP _chem_comp.name "(E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-3-[(3S)-2-oxo-2,3-dihydro-1H-indol-3-yl]-L-alanine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 N3 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-28 _chem_comp.pdbx_modified_date 2021-01-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 449.351 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VCP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XRH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VCP C05 C1 C 0 1 N N N 81.946 14.313 13.895 2.914 -0.370 -0.131 C05 VCP 1 VCP C06 C2 C 0 1 Y N N 82.916 14.325 12.749 2.526 0.957 0.469 C06 VCP 2 VCP C07 C3 C 0 1 Y N N 82.696 15.094 11.606 1.275 1.521 0.195 C07 VCP 3 VCP C08 C4 C 0 1 N N N 81.593 15.859 11.500 0.311 0.837 -0.688 C08 VCP 4 VCP C10 C5 C 0 1 N N S 79.883 16.934 10.175 -1.797 0.696 -1.806 C10 VCP 5 VCP C11 C6 C 0 1 N N N 78.901 17.116 11.268 -3.083 0.406 -1.030 C11 VCP 6 VCP C12 C7 C 0 1 N N S 77.861 16.002 11.321 -2.787 -0.590 0.094 C12 VCP 7 VCP C13 C8 C 0 1 Y N N 76.957 16.293 12.461 -4.014 -0.800 0.952 C13 VCP 8 VCP C14 C9 C 0 1 Y N N 75.663 16.527 11.994 -4.339 -2.146 0.846 C14 VCP 9 VCP C16 C10 C 0 1 N N N 76.891 16.068 10.133 -2.497 -1.962 -0.476 C16 VCP 10 VCP C18 C11 C 0 1 Y N N 74.643 16.834 12.875 -5.444 -2.630 1.543 C18 VCP 11 VCP C19 C12 C 0 1 Y N N 74.946 16.918 14.237 -6.198 -1.778 2.323 C19 VCP 12 VCP C20 C13 C 0 1 Y N N 76.250 16.688 14.697 -5.864 -0.440 2.421 C20 VCP 13 VCP C21 C14 C 0 1 Y N N 77.272 16.375 13.803 -4.768 0.048 1.731 C21 VCP 14 VCP C22 C15 C 0 1 N N N 79.992 18.094 9.172 -2.111 1.579 -2.986 C22 VCP 15 VCP C25 C16 C 0 1 Y N N 83.640 15.068 10.578 0.963 2.757 0.786 C25 VCP 16 VCP C27 C17 C 0 1 Y N N 84.777 14.279 10.709 1.902 3.361 1.610 C27 VCP 17 VCP C28 C18 C 0 1 N N N 85.803 14.233 9.619 1.585 4.686 2.253 C28 VCP 18 VCP C30 C19 C 0 1 Y N N 84.068 13.555 12.828 3.397 1.630 1.301 C30 VCP 19 VCP N09 N1 N 0 1 N N N 81.063 16.102 10.335 -0.840 1.375 -0.929 N09 VCP 20 VCP N15 N2 N 0 1 N N N 75.530 16.406 10.591 -3.434 -2.796 0.005 N15 VCP 21 VCP N29 N3 N 0 1 Y N N 84.954 13.553 11.820 3.067 2.789 1.837 N29 VCP 22 VCP O01 O1 O 0 1 N N N 78.951 12.009 14.048 6.469 -2.093 0.429 O01 VCP 23 VCP O03 O2 O 0 1 N N N 81.229 11.276 14.281 4.160 -3.349 0.446 O03 VCP 24 VCP O04 O3 O 0 1 N N N 80.776 13.636 13.524 4.228 -0.725 0.306 O04 VCP 25 VCP O17 O4 O 0 1 N N N 77.205 15.878 8.989 -1.590 -2.253 -1.227 O17 VCP 26 VCP O23 O5 O 0 1 N N N 80.510 19.173 9.529 -2.971 1.160 -3.928 O23 VCP 27 VCP O24 O6 O 0 1 N N N 79.562 17.959 8.005 -1.589 2.664 -3.084 O24 VCP 28 VCP O26 O7 O 0 1 N N N 83.465 15.804 9.456 -0.235 3.349 0.554 O26 VCP 29 VCP P02 P1 P 0 1 N N N 80.310 12.415 14.469 4.964 -2.084 -0.142 P02 VCP 30 VCP H052 H1 H 0 0 N N N 82.405 13.804 14.755 2.206 -1.135 0.189 H052 VCP 31 VCP H051 H2 H 0 0 N N N 81.696 15.348 14.172 2.901 -0.295 -1.218 H051 VCP 32 VCP H081 H3 H 0 0 N N N 81.143 16.275 12.389 0.567 -0.113 -1.134 H081 VCP 33 VCP H111 H5 H 0 0 N N N 79.442 17.138 12.226 -3.467 1.332 -0.603 H111 VCP 34 VCP H112 H6 H 0 0 N N N 78.382 18.074 11.118 -3.827 -0.019 -1.704 H112 VCP 35 VCP H121 H7 H 0 0 N N N 78.331 15.011 11.403 -1.952 -0.242 0.701 H121 VCP 36 VCP H181 H8 H 0 0 N N N 73.637 17.005 12.520 -5.711 -3.674 1.472 H181 VCP 37 VCP H191 H9 H 0 0 N N N 74.166 17.163 14.943 -7.054 -2.159 2.861 H191 VCP 38 VCP H201 H10 H 0 0 N N N 76.464 16.754 15.753 -6.458 0.223 3.033 H201 VCP 39 VCP H211 H11 H 0 0 N N N 78.280 16.202 14.149 -4.504 1.093 1.805 H211 VCP 40 VCP H281 H12 H 0 0 N N N 86.619 13.556 9.911 1.111 4.517 3.219 H281 VCP 41 VCP H282 H13 H 0 0 N N N 85.337 13.867 8.692 2.507 5.251 2.394 H282 VCP 42 VCP H283 H14 H 0 0 N N N 86.207 15.243 9.453 0.909 5.249 1.610 H283 VCP 43 VCP H301 H15 H 0 0 N N N 84.253 12.954 13.706 4.362 1.199 1.521 H301 VCP 44 VCP H151 H16 H 0 0 N N N 74.705 16.523 10.038 -3.477 -3.742 -0.207 H151 VCP 45 VCP H2 H17 H 0 1 N N N 78.653 11.289 14.591 6.973 -2.885 0.197 H2 VCP 46 VCP H3 H18 H 0 1 N N N 80.958 10.555 14.836 4.099 -3.362 1.411 H3 VCP 47 VCP H4 H19 H 0 1 N N N 80.501 19.785 8.802 -3.141 1.761 -4.666 H4 VCP 48 VCP H5 H20 H 0 1 N N N 82.648 16.285 9.516 -0.241 3.941 -0.210 H5 VCP 49 VCP O31 O8 O 0 1 N N N ? ? ? 4.996 -2.164 -1.619 O31 VCP 50 VCP H1 H21 H 0 1 N N N 79.292 16.250 9.548 -1.366 -0.241 -2.158 H1 VCP 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VCP O24 C22 DOUB N N 1 VCP O17 C16 DOUB N N 2 VCP C22 O23 SING N N 3 VCP C22 C10 SING N N 4 VCP O26 C25 SING N N 5 VCP C28 C27 SING N N 6 VCP C16 N15 SING N N 7 VCP C16 C12 SING N N 8 VCP C10 N09 SING N N 9 VCP C10 C11 SING N N 10 VCP N09 C08 DOUB N N 11 VCP C25 C27 DOUB Y N 12 VCP C25 C07 SING Y N 13 VCP N15 C14 SING N N 14 VCP C27 N29 SING Y N 15 VCP C11 C12 SING N N 16 VCP C12 C13 SING N N 17 VCP C08 C07 SING N N 18 VCP C07 C06 DOUB Y N 19 VCP N29 C30 DOUB Y N 20 VCP C14 C13 DOUB Y N 21 VCP C14 C18 SING Y N 22 VCP C13 C21 SING Y N 23 VCP C06 C30 SING Y N 24 VCP C06 C05 SING N N 25 VCP C18 C19 DOUB Y N 26 VCP O04 C05 SING N N 27 VCP O04 P02 SING N N 28 VCP C21 C20 DOUB Y N 29 VCP O01 P02 SING N N 30 VCP C19 C20 SING Y N 31 VCP O03 P02 SING N N 32 VCP C05 H052 SING N N 33 VCP C05 H051 SING N N 34 VCP C08 H081 SING N N 35 VCP C11 H111 SING N N 36 VCP C11 H112 SING N N 37 VCP C12 H121 SING N N 38 VCP C18 H181 SING N N 39 VCP C19 H191 SING N N 40 VCP C20 H201 SING N N 41 VCP C21 H211 SING N N 42 VCP C28 H281 SING N N 43 VCP C28 H282 SING N N 44 VCP C28 H283 SING N N 45 VCP C30 H301 SING N N 46 VCP N15 H151 SING N N 47 VCP O01 H2 SING N N 48 VCP O03 H3 SING N N 49 VCP O23 H4 SING N N 50 VCP O26 H5 SING N N 51 VCP P02 O31 DOUB N N 52 VCP C10 H1 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VCP SMILES ACDLabs 12.01 "C(c1cnc(c(c1[C@H]=NC(CC3c2ccccc2NC3=O)C(O)=O)O)C)OP(O)(O)=O" VCP InChI InChI 1.03 "InChI=1S/C19H20N3O8P/c1-10-17(23)14(11(7-20-10)9-30-31(27,28)29)8-21-16(19(25)26)6-13-12-4-2-3-5-15(12)22-18(13)24/h2-5,7-8,13,16,23H,6,9H2,1H3,(H,22,24)(H,25,26)(H2,27,28,29)/b21-8+/t13-,16?/m0/s1" VCP InChIKey InChI 1.03 ZXXYWPJNDHLAKD-ARQPKOPCSA-N VCP SMILES_CANONICAL CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[C@@H](C[C@@H]2C(=O)Nc3ccccc23)C(O)=O)c1O" VCP SMILES CACTVS 3.385 "Cc1ncc(CO[P](O)(O)=O)c(C=N[CH](C[CH]2C(=O)Nc3ccccc23)C(O)=O)c1O" VCP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/[C@@H](C[C@H]2c3ccccc3NC2=O)C(=O)O)O" VCP SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NC(CC2c3ccccc3NC2=O)C(=O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VCP "SYSTEMATIC NAME" ACDLabs 12.01 "(E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-3-[(3S)-2-oxo-2,3-dihydro-1H-indol-3-yl]-L-alanine" VCP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-[(3~{S})-2-oxidanylidene-1,3-dihydroindol-3-yl]propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VCP "Create component" 2020-07-29 RCSB VCP "Other modification" 2021-01-08 RCSB VCP "Initial release" 2021-02-03 RCSB ##