data_VD6 # _chem_comp.id VD6 _chem_comp.name "(2R)-1-benzylpiperidine-2-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-29 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 219.280 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VD6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FKW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VD6 C7 C1 C 0 1 N N N 50.815 2.134 26.983 0.367 1.618 1.038 C7 VD6 1 VD6 C8 C2 C 0 1 N N N 50.634 1.977 28.508 0.922 2.568 -0.025 C8 VD6 2 VD6 C9 C3 C 0 1 N N N 49.456 2.736 29.082 2.421 2.312 -0.200 C9 VD6 3 VD6 O1 O1 O 0 1 N N N 46.736 4.194 25.553 3.459 -1.959 -0.168 O1 VD6 4 VD6 C1 C4 C 0 1 Y N N 51.508 0.227 22.927 -3.521 -1.441 0.237 C1 VD6 5 VD6 C5 C5 C 0 1 Y N N 53.266 1.464 23.971 -3.734 0.901 -0.208 C5 VD6 6 VD6 C6 C6 C 0 1 N N N 49.994 3.144 24.746 -0.111 -0.073 -0.628 C6 VD6 7 VD6 C4 C7 C 0 1 Y N N 52.359 2.375 24.469 -2.376 0.977 -0.456 C4 VD6 8 VD6 C3 C8 C 0 1 Y N N 51.019 2.207 24.199 -1.591 -0.156 -0.358 C3 VD6 9 VD6 C2 C9 C 0 1 Y N N 50.600 1.136 23.417 -2.164 -1.366 -0.011 C2 VD6 10 VD6 C12 C10 C 0 1 N N N 47.448 3.249 25.726 2.229 -1.499 0.111 C12 VD6 11 VD6 O O2 O 0 1 N N N 47.441 2.170 25.203 1.278 -2.242 0.053 O VD6 12 VD6 C11 C11 C 0 1 N N R 48.572 3.454 26.872 2.034 -0.055 0.495 C11 VD6 13 VD6 C10 C12 C 0 1 N N N 48.313 2.671 28.131 2.639 0.846 -0.585 C10 VD6 14 VD6 N N1 N 0 1 N N N 50.006 3.248 26.311 0.599 0.228 0.623 N VD6 15 VD6 C C13 C 0 1 Y N N 52.844 0.394 23.211 -4.306 -0.308 0.139 C VD6 16 VD6 H1 H1 H 0 1 N N N 50.528 1.182 26.512 0.869 1.802 1.987 H1 VD6 17 VD6 H2 H2 H 0 1 N N N 51.880 2.332 26.791 -0.704 1.788 1.154 H2 VD6 18 VD6 H3 H3 H 0 1 N N N 50.495 0.908 28.729 0.410 2.394 -0.972 H3 VD6 19 VD6 H4 H4 H 0 1 N N N 51.549 2.338 29.001 0.763 3.600 0.290 H4 VD6 20 VD6 H5 H5 H 0 1 N N N 49.740 3.786 29.243 2.812 2.957 -0.987 H5 VD6 21 VD6 H6 H6 H 0 1 N N N 49.161 2.285 30.041 2.938 2.525 0.736 H6 VD6 22 VD6 H7 H7 H 0 1 N N N 46.091 3.987 24.887 3.534 -2.893 -0.410 H7 VD6 23 VD6 H8 H8 H 0 1 N N N 51.177 -0.608 22.327 -3.970 -2.387 0.504 H8 VD6 24 VD6 H9 H9 H 0 1 N N N 54.318 1.590 24.178 -4.347 1.787 -0.287 H9 VD6 25 VD6 H10 H10 H 0 1 N N N 50.181 4.145 24.330 0.240 -1.026 -1.024 H10 VD6 26 VD6 H11 H11 H 0 1 N N N 49.000 2.795 24.429 0.083 0.715 -1.355 H11 VD6 27 VD6 H12 H12 H 0 1 N N N 52.695 3.211 25.064 -1.929 1.922 -0.729 H12 VD6 28 VD6 H13 H13 H 0 1 N N N 49.550 1.017 23.192 -1.550 -2.251 0.066 H13 VD6 29 VD6 H14 H14 H 0 1 N N N 48.509 4.516 27.150 2.528 0.138 1.447 H14 VD6 30 VD6 H15 H15 H 0 1 N N N 47.419 3.080 28.624 2.155 0.645 -1.540 H15 VD6 31 VD6 H16 H16 H 0 1 N N N 48.135 1.619 27.863 3.707 0.647 -0.668 H16 VD6 32 VD6 H18 H18 H 0 1 N N N 53.566 -0.317 22.837 -5.367 -0.367 0.333 H18 VD6 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VD6 C1 C DOUB Y N 1 VD6 C1 C2 SING Y N 2 VD6 C C5 SING Y N 3 VD6 C2 C3 DOUB Y N 4 VD6 C5 C4 DOUB Y N 5 VD6 C3 C4 SING Y N 6 VD6 C3 C6 SING N N 7 VD6 C6 N SING N N 8 VD6 O C12 DOUB N N 9 VD6 O1 C12 SING N N 10 VD6 C12 C11 SING N N 11 VD6 N C11 SING N N 12 VD6 N C7 SING N N 13 VD6 C11 C10 SING N N 14 VD6 C7 C8 SING N N 15 VD6 C10 C9 SING N N 16 VD6 C8 C9 SING N N 17 VD6 C7 H1 SING N N 18 VD6 C7 H2 SING N N 19 VD6 C8 H3 SING N N 20 VD6 C8 H4 SING N N 21 VD6 C9 H5 SING N N 22 VD6 C9 H6 SING N N 23 VD6 O1 H7 SING N N 24 VD6 C1 H8 SING N N 25 VD6 C5 H9 SING N N 26 VD6 C6 H10 SING N N 27 VD6 C6 H11 SING N N 28 VD6 C4 H12 SING N N 29 VD6 C2 H13 SING N N 30 VD6 C11 H14 SING N N 31 VD6 C10 H15 SING N N 32 VD6 C10 H16 SING N N 33 VD6 C H18 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VD6 SMILES ACDLabs 12.01 "O=C(O)C1CCCCN1Cc1ccccc1" VD6 InChI InChI 1.06 "InChI=1S/C13H17NO2/c15-13(16)12-8-4-5-9-14(12)10-11-6-2-1-3-7-11/h1-3,6-7,12H,4-5,8-10H2,(H,15,16)/t12-/m1/s1" VD6 InChIKey InChI 1.06 FEUCBQVXYVZGCM-GFCCVEGCSA-N VD6 SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@H]1CCCCN1Cc2ccccc2" VD6 SMILES CACTVS 3.385 "OC(=O)[CH]1CCCCN1Cc2ccccc2" VD6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCCC[C@@H]2C(=O)O" VD6 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CN2CCCCC2C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VD6 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-1-benzylpiperidine-2-carboxylic acid" VD6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-1-(phenylmethyl)piperidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VD6 "Create component" 2022-08-29 RCSB VD6 "Initial release" 2022-11-02 RCSB #