data_VDD # _chem_comp.id VDD _chem_comp.name "(2S)-2-[(pyridin-2-yl)sulfanyl]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H9 N O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-29 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 183.228 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VDD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FLI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VDD C7 C1 C 0 1 Y N N 26.947 15.319 38.818 2.646 1.445 0.211 C7 VDD 1 VDD O1 O1 O 0 1 N N N 31.989 16.036 42.976 -3.773 0.880 0.655 O1 VDD 2 VDD C1 C2 C 0 1 N N S 29.864 16.377 41.845 -1.413 0.432 0.088 C1 VDD 3 VDD C5 C3 C 0 1 Y N N 28.441 14.693 37.127 3.630 -0.725 0.024 C5 VDD 4 VDD C6 C4 C 0 1 Y N N 27.173 14.709 37.596 3.773 0.651 0.146 C6 VDD 5 VDD C4 C5 C 0 1 Y N N 29.458 15.241 37.873 2.353 -1.254 -0.030 C4 VDD 6 VDD C3 C6 C 0 1 Y N N 29.138 15.793 39.099 1.261 -0.393 0.036 C3 VDD 7 VDD C2 C7 C 0 1 N N N 31.108 16.857 42.670 -2.861 0.024 0.168 C2 VDD 8 VDD O O2 O 0 1 N N N 31.141 18.064 42.917 -3.201 -1.073 -0.206 O VDD 9 VDD C C8 C 0 1 N N N 29.433 14.967 42.154 -1.197 1.307 -1.149 C VDD 10 VDD S S1 S 0 1 N N N 30.446 16.351 40.130 -0.373 -1.050 -0.031 S VDD 11 VDD N N1 N 0 1 Y N N 27.894 15.862 39.560 1.439 0.914 0.157 N VDD 12 VDD H1 H1 H 0 1 N N N 25.933 15.353 39.187 2.753 2.516 0.311 H1 VDD 13 VDD H2 H2 H 0 1 N N N 32.694 16.482 43.431 -4.690 0.573 0.687 H2 VDD 14 VDD H3 H3 H 0 1 N N N 29.033 17.094 41.919 -1.143 0.994 0.982 H3 VDD 15 VDD H4 H4 H 0 1 N N N 28.655 14.250 36.166 4.496 -1.367 -0.029 H4 VDD 16 VDD H5 H5 H 0 1 N N N 26.365 14.261 37.037 4.757 1.095 0.190 H5 VDD 17 VDD H6 H6 H 0 1 N N N 30.476 15.240 37.512 2.205 -2.319 -0.125 H6 VDD 18 VDD H7 H7 H 0 1 N N N 29.066 14.914 43.190 -0.149 1.602 -1.207 H7 VDD 19 VDD H8 H8 H 0 1 N N N 28.629 14.670 41.464 -1.466 0.744 -2.043 H8 VDD 20 VDD H9 H9 H 0 1 N N N 30.289 14.287 42.034 -1.822 2.197 -1.078 H9 VDD 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VDD C5 C6 DOUB Y N 1 VDD C5 C4 SING Y N 2 VDD C6 C7 SING Y N 3 VDD C4 C3 DOUB Y N 4 VDD C7 N DOUB Y N 5 VDD C3 N SING Y N 6 VDD C3 S SING N N 7 VDD S C1 SING N N 8 VDD C1 C SING N N 9 VDD C1 C2 SING N N 10 VDD C2 O DOUB N N 11 VDD C2 O1 SING N N 12 VDD C7 H1 SING N N 13 VDD O1 H2 SING N N 14 VDD C1 H3 SING N N 15 VDD C5 H4 SING N N 16 VDD C6 H5 SING N N 17 VDD C4 H6 SING N N 18 VDD C H7 SING N N 19 VDD C H8 SING N N 20 VDD C H9 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VDD SMILES ACDLabs 12.01 "CC(Sc1ccccn1)C(=O)O" VDD InChI InChI 1.06 "InChI=1S/C8H9NO2S/c1-6(8(10)11)12-7-4-2-3-5-9-7/h2-6H,1H3,(H,10,11)/t6-/m0/s1" VDD InChIKey InChI 1.06 FAAIBCMHMKYUAH-LURJTMIESA-N VDD SMILES_CANONICAL CACTVS 3.385 "C[C@H](Sc1ccccn1)C(O)=O" VDD SMILES CACTVS 3.385 "C[CH](Sc1ccccn1)C(O)=O" VDD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)O)Sc1ccccn1" VDD SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)O)Sc1ccccn1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VDD "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-[(pyridin-2-yl)sulfanyl]propanoic acid" VDD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-pyridin-2-ylsulfanylpropanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VDD "Create component" 2022-08-29 RCSB VDD "Initial release" 2022-11-02 RCSB #